Wall clock time and date at job start Wed Apr 1 2020 01:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47395 * 119.99796 * 2 1 3 5 5 C 1.50696 * 109.47292 * 185.00093 * 4 2 1 6 6 C 1.39876 * 126.03984 * 90.02437 * 5 4 2 7 7 N 1.30836 * 108.20093 * 179.97438 * 6 5 4 8 8 N 1.40081 * 108.20864 * 359.97438 * 7 6 5 9 9 C 1.46495 * 126.04117 * 180.02562 * 8 7 6 10 10 C 1.34953 * 107.92548 * 359.75669 * 8 7 6 11 11 N 1.46505 * 109.47222 * 240.00106 * 2 1 3 12 12 C 1.34771 * 119.99983 * 84.99696 * 11 2 1 13 13 O 1.21586 * 120.00044 * 5.09220 * 12 11 2 14 14 N 1.34777 * 120.00137 * 185.08778 * 12 11 2 15 15 C 1.47080 * 120.88520 * 175.02852 * 14 12 11 16 16 C 1.53240 * 108.51945 * 231.16486 * 15 14 12 17 17 N 1.46893 * 109.33873 * 306.16619 * 16 15 14 18 18 C 1.46903 * 110.99903 * 187.25317 * 17 16 15 19 19 C 1.50702 * 109.47068 * 170.00266 * 18 17 16 20 20 H 1.07994 * 120.00436 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99487 * 180.02562 * 19 18 17 22 22 N 1.31523 * 119.99579 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00498 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46919 * 90.00519 * 23 21 19 25 25 H 1.48496 * 109.47118 * 210.00089 * 23 21 19 26 26 H 1.48494 * 109.47048 * 330.00315 * 23 21 19 27 27 C 1.46900 * 111.26822 * 63.10906 * 17 16 15 28 28 C 1.47079 * 120.87536 * 355.00691 * 14 12 11 29 29 H 1.09003 * 109.47350 * 300.00388 * 1 2 3 30 30 H 1.09003 * 109.47530 * 59.99929 * 1 2 3 31 31 H 1.08998 * 109.47468 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47145 * 305.00148 * 4 2 1 33 33 H 1.08999 * 109.46849 * 64.99665 * 4 2 1 34 34 H 1.08000 * 125.89818 * 359.95628 * 6 5 4 35 35 H 1.08997 * 109.47509 * 89.97468 * 9 8 7 36 36 H 1.09002 * 109.47467 * 209.97781 * 9 8 7 37 37 H 1.09005 * 109.47001 * 329.97342 * 9 8 7 38 38 H 1.07993 * 126.12926 * 180.23243 * 10 8 7 39 39 H 0.96999 * 119.99499 * 264.99977 * 11 2 1 40 40 H 1.08996 * 109.62627 * 111.45043 * 15 14 12 41 41 H 1.09001 * 109.62476 * 350.87153 * 15 14 12 42 42 H 1.09004 * 109.48513 * 186.20858 * 16 15 14 43 43 H 1.09000 * 109.49378 * 66.12867 * 16 15 14 44 44 H 1.08999 * 109.47328 * 290.00314 * 18 17 16 45 45 H 1.08999 * 109.46954 * 50.00383 * 18 17 16 46 46 H 0.96996 * 119.99916 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49278 * 56.85586 * 27 17 16 48 48 H 1.09004 * 109.49346 * 176.90080 * 27 17 16 49 49 H 1.08997 * 109.63657 * 9.13038 * 28 14 12 50 50 H 1.09003 * 109.63083 * 248.54458 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 6 4.2691 0.4024 1.9396 7 7 5.5433 0.1501 1.7826 8 7 5.6674 -1.0376 1.0504 9 6 6.9237 -1.6787 0.6544 10 6 4.4253 -1.4901 0.7793 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0183 -2.3571 13 8 1.9469 1.1805 -2.3908 14 7 2.4975 -0.6747 -3.4808 15 6 2.5382 0.0173 -4.7780 16 6 1.7288 -0.7994 -5.7909 17 7 2.2250 -2.1819 -5.8087 18 6 1.5930 -2.9543 -6.8867 19 6 2.2951 -4.2797 -7.0332 20 1 3.1277 -4.5237 -6.3903 21 6 1.8749 -5.1803 -7.9889 22 7 2.4880 -6.3368 -8.1171 23 14 0.4351 -4.7580 -9.1015 24 1 0.9360 -4.0759 -10.3218 25 1 -0.2746 -6.0041 -9.4871 26 1 -0.5006 -3.8584 -8.3802 27 6 2.0284 -2.8354 -4.5078 28 6 2.8501 -2.1021 -3.4422 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7714 1.2056 34 1 3.8510 1.2498 2.4625 35 1 7.2361 -2.3767 1.4311 36 1 6.7772 -2.2183 -0.2813 37 1 7.6927 -0.9182 0.5186 38 1 4.1802 -2.3882 0.2318 39 1 2.2490 -1.6318 -1.1526 40 1 3.5709 0.1006 -5.1163 41 1 2.1018 1.0110 -4.6766 42 1 1.8388 -0.3606 -6.7827 43 1 0.6769 -0.7942 -5.5050 44 1 0.5436 -3.1237 -6.6452 45 1 1.6655 -2.3993 -7.8220 46 1 2.1922 -6.9706 -8.7892 47 1 0.9724 -2.8018 -4.2398 48 1 2.3552 -3.8735 -4.5692 49 1 2.6200 -2.5098 -2.4579 50 1 3.9129 -2.2227 -3.6523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601609322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:08 Heat of formation + Delta-G solvation = 67.703509 kcal Electronic energy + Delta-G solvation = -29734.897784 eV Core-core repulsion = 25799.505740 eV Total energy + Delta-G solvation = -3935.392044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.43798 -40.23642 -37.95129 -36.25891 -34.45181 -33.56903 -32.52767 -31.83970 -30.79697 -30.13926 -28.56757 -27.87658 -25.74110 -25.43134 -23.43189 -22.36049 -21.47986 -21.25973 -20.54351 -20.34791 -19.30531 -17.90375 -17.03704 -16.87420 -16.36618 -15.66091 -15.32517 -15.02875 -14.71447 -14.68840 -14.58001 -14.32456 -14.09171 -13.73472 -13.61927 -13.53095 -13.26272 -13.07255 -12.95665 -12.67190 -12.44709 -12.39067 -12.27701 -12.04838 -11.75209 -11.55388 -11.23810 -11.16619 -11.04591 -10.80579 -10.72723 -10.61166 -10.35577 -9.95313 -9.87621 -9.62530 -9.38378 -9.09585 -8.64180 -8.54920 -8.35743 -7.48199 -6.13105 -4.11016 1.69206 2.32265 2.58690 2.76399 3.23550 3.31400 3.33319 3.36026 3.94159 4.27734 4.35536 4.56855 4.61016 4.77142 4.86279 4.87958 4.91606 5.03522 5.14187 5.17553 5.19884 5.31313 5.33421 5.37524 5.41727 5.56326 5.56633 5.58689 5.65680 5.69659 5.75733 5.82756 5.99012 6.02388 6.14984 6.18014 6.34940 6.38244 6.44026 6.57465 6.62963 6.78233 6.78510 6.89120 7.08274 7.49107 7.49673 7.77202 7.92229 8.06879 8.55988 8.73792 8.93540 9.48706 10.99692 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002731 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.549240 B =10250.426480 C =11138.090408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.164 3.836 3 H 0.088 0.912 4 C -0.047 4.047 5 C -0.234 4.234 6 C 0.053 3.947 7 N -0.299 5.299 8 N -0.375 5.375 9 C 0.100 3.900 10 C 0.061 3.939 11 N -0.739 5.739 12 C 0.710 3.290 13 O -0.598 6.598 14 N -0.627 5.627 15 C 0.138 3.862 16 C 0.038 3.962 17 N -0.526 5.526 18 C 0.162 3.838 19 C -0.511 4.511 20 H 0.081 0.919 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.874 3.126 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.268 1.268 27 C 0.050 3.950 28 C 0.118 3.882 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.181 0.819 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.391 0.609 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.027 0.973 44 H -0.011 1.011 45 H 0.026 0.974 46 H 0.264 0.736 47 H 0.025 0.975 48 H 0.101 0.899 49 H 0.069 0.931 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 9.272 20.338 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.106 0.894 4 C -0.086 4.086 5 C -0.245 4.245 6 C -0.133 4.133 7 N -0.120 5.120 8 N -0.157 5.157 9 C -0.041 4.041 10 C -0.085 4.085 11 N -0.397 5.397 12 C 0.411 3.589 13 O -0.477 6.477 14 N -0.365 5.365 15 C 0.015 3.985 16 C -0.092 4.092 17 N -0.250 5.250 18 C 0.036 3.964 19 C -0.549 4.549 20 H 0.099 0.901 21 C -0.132 4.132 22 N -0.538 5.538 23 Si 0.702 3.298 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.193 1.193 27 C -0.079 4.079 28 C -0.006 4.006 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.186 0.814 39 H 0.227 0.773 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.006 0.994 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.119 0.881 49 H 0.087 0.913 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.104 10.312 20.301 22.981 hybrid contribution -2.278 -0.876 -0.868 2.591 sum 0.826 9.436 19.433 21.619 Atomic orbital electron populations 1.22218 0.95589 1.02053 1.02445 1.20801 0.93047 0.97536 0.82792 0.89387 1.20207 0.89685 1.01208 0.97498 1.19952 0.96191 0.98640 1.09759 1.23766 0.90324 0.99420 0.99833 1.77343 1.19667 0.99843 1.15188 1.48430 1.05881 1.18819 1.42545 1.21879 0.83264 0.97960 1.00989 1.22278 0.84599 1.00378 1.01254 1.45294 1.72000 1.13417 1.08943 1.15810 0.77760 0.84950 0.80350 1.90870 1.59080 1.12751 1.85047 1.47377 1.71523 1.10754 1.06815 1.21569 1.00767 0.95697 0.80503 1.22491 0.96217 0.91397 0.99077 1.61880 1.58562 1.00582 1.04002 1.20179 0.92690 0.94171 0.89330 1.20996 1.16922 0.97890 1.19136 0.90105 1.24891 0.96495 0.94876 0.96974 1.69887 1.41168 1.07880 1.34858 0.86872 0.83313 0.78067 0.81570 1.20087 1.21186 1.19311 1.22350 0.96921 0.99770 0.88825 1.21807 1.00386 0.79888 0.98487 0.91745 0.92088 0.92550 0.89519 0.90912 0.80232 0.90768 0.89228 0.89326 0.81388 0.77256 0.91247 0.89347 0.90072 0.95493 0.99373 0.95614 0.92598 0.95684 0.88070 0.91297 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.16 1.58 2.61 -67.93 -0.18 1.41 16 3 H 0.09 1.06 7.51 -51.93 -0.39 0.67 16 4 C -0.05 -0.33 5.24 -27.88 -0.15 -0.48 16 5 C -0.23 -2.12 5.10 -105.05 -0.54 -2.66 16 6 C 0.05 0.54 11.96 -17.36 -0.21 0.33 16 7 N -0.30 -3.58 12.58 30.63 0.39 -3.19 16 8 N -0.37 -3.74 4.01 -68.16 -0.27 -4.02 16 9 C 0.10 0.65 11.47 59.84 0.69 1.34 16 10 C 0.06 0.54 11.32 -17.22 -0.19 0.35 16 11 N -0.74 -8.24 4.63 -58.67 -0.27 -8.52 16 12 C 0.71 10.71 8.27 -86.92 -0.72 9.99 16 13 O -0.60 -11.08 15.45 5.29 0.08 -11.00 16 14 N -0.63 -9.28 3.01 -178.19 -0.54 -9.81 16 15 C 0.14 2.12 6.58 -3.60 -0.02 2.09 16 16 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 17 N -0.53 -10.33 4.62 -235.76 -1.09 -11.41 16 18 C 0.16 3.77 3.79 -4.97 -0.02 3.75 16 19 C -0.51 -13.79 8.96 -34.44 -0.31 -14.10 16 20 H 0.08 2.34 7.37 -52.49 -0.39 1.96 16 21 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 22 N -0.90 -26.58 13.96 55.43 0.77 -25.80 16 23 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 27 C 0.05 0.87 5.46 -3.70 -0.02 0.85 16 28 C 0.12 1.58 6.59 -3.60 -0.02 1.56 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.39 3.60 6.10 -40.82 -0.25 3.35 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.37 7.10 -51.93 -0.37 1.00 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H -0.01 -0.27 7.18 -51.93 -0.37 -0.65 16 45 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.10 1.90 6.67 -51.93 -0.35 1.56 16 49 H 0.07 0.70 5.63 -51.93 -0.29 0.41 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -35.00 399.49 -9.33 -44.32 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.29 Total: 1.43 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.45 Total: 5.74 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -1.01 Total: -62.75 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.00 -9.33 -44.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601609322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.027 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds