Wall clock time and date at job start Wed Apr 1 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47395 * 119.99796 * 2 1 3 5 5 C 1.50696 * 109.47292 * 185.00093 * 4 2 1 6 6 C 1.39876 * 126.03984 * 90.02437 * 5 4 2 7 7 N 1.30836 * 108.20093 * 179.97438 * 6 5 4 8 8 N 1.40081 * 108.20864 * 359.97438 * 7 6 5 9 9 C 1.46495 * 126.04117 * 180.02562 * 8 7 6 10 10 C 1.34953 * 107.92548 * 359.75669 * 8 7 6 11 11 N 1.46505 * 109.47222 * 240.00106 * 2 1 3 12 12 C 1.34771 * 119.99983 * 84.99696 * 11 2 1 13 13 O 1.21586 * 120.00044 * 5.09220 * 12 11 2 14 14 N 1.34777 * 120.00137 * 185.08778 * 12 11 2 15 15 C 1.47080 * 120.88520 * 175.02852 * 14 12 11 16 16 C 1.53240 * 108.51945 * 231.16486 * 15 14 12 17 17 N 1.46893 * 109.33873 * 306.16619 * 16 15 14 18 18 C 1.46903 * 110.99903 * 187.25317 * 17 16 15 19 19 C 1.50702 * 109.47068 * 170.00266 * 18 17 16 20 20 H 1.07994 * 120.00436 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99487 * 180.02562 * 19 18 17 22 22 N 1.31523 * 119.99579 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00498 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46919 * 90.00519 * 23 21 19 25 25 H 1.48496 * 109.47118 * 210.00089 * 23 21 19 26 26 H 1.48494 * 109.47048 * 330.00315 * 23 21 19 27 27 C 1.46900 * 111.26822 * 63.10906 * 17 16 15 28 28 C 1.47079 * 120.87536 * 355.00691 * 14 12 11 29 29 H 1.09003 * 109.47350 * 300.00388 * 1 2 3 30 30 H 1.09003 * 109.47530 * 59.99929 * 1 2 3 31 31 H 1.08998 * 109.47468 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47145 * 305.00148 * 4 2 1 33 33 H 1.08999 * 109.46849 * 64.99665 * 4 2 1 34 34 H 1.08000 * 125.89818 * 359.95628 * 6 5 4 35 35 H 1.08997 * 109.47509 * 89.97468 * 9 8 7 36 36 H 1.09002 * 109.47467 * 209.97781 * 9 8 7 37 37 H 1.09005 * 109.47001 * 329.97342 * 9 8 7 38 38 H 1.07993 * 126.12926 * 180.23243 * 10 8 7 39 39 H 0.96999 * 119.99499 * 264.99977 * 11 2 1 40 40 H 1.08996 * 109.62627 * 111.45043 * 15 14 12 41 41 H 1.09001 * 109.62476 * 350.87153 * 15 14 12 42 42 H 1.09004 * 109.48513 * 186.20858 * 16 15 14 43 43 H 1.09000 * 109.49378 * 66.12867 * 16 15 14 44 44 H 1.08999 * 109.47328 * 290.00314 * 18 17 16 45 45 H 1.08999 * 109.46954 * 50.00383 * 18 17 16 46 46 H 0.96996 * 119.99916 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49278 * 56.85586 * 27 17 16 48 48 H 1.09004 * 109.49346 * 176.90080 * 27 17 16 49 49 H 1.08997 * 109.63657 * 9.13038 * 28 14 12 50 50 H 1.09003 * 109.63083 * 248.54458 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 6 4.2691 0.4024 1.9396 7 7 5.5433 0.1501 1.7826 8 7 5.6674 -1.0376 1.0504 9 6 6.9237 -1.6787 0.6544 10 6 4.4253 -1.4901 0.7793 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0183 -2.3571 13 8 1.9469 1.1805 -2.3908 14 7 2.4975 -0.6747 -3.4808 15 6 2.5382 0.0173 -4.7780 16 6 1.7288 -0.7994 -5.7909 17 7 2.2250 -2.1819 -5.8087 18 6 1.5930 -2.9543 -6.8867 19 6 2.2951 -4.2797 -7.0332 20 1 3.1277 -4.5237 -6.3903 21 6 1.8749 -5.1803 -7.9889 22 7 2.4880 -6.3368 -8.1171 23 14 0.4351 -4.7580 -9.1015 24 1 0.9360 -4.0759 -10.3218 25 1 -0.2746 -6.0041 -9.4871 26 1 -0.5006 -3.8584 -8.3802 27 6 2.0284 -2.8354 -4.5078 28 6 2.8501 -2.1021 -3.4422 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7714 1.2056 34 1 3.8510 1.2498 2.4625 35 1 7.2361 -2.3767 1.4311 36 1 6.7772 -2.2183 -0.2813 37 1 7.6927 -0.9182 0.5186 38 1 4.1802 -2.3882 0.2318 39 1 2.2490 -1.6318 -1.1526 40 1 3.5709 0.1006 -5.1163 41 1 2.1018 1.0110 -4.6766 42 1 1.8388 -0.3606 -6.7827 43 1 0.6769 -0.7942 -5.5050 44 1 0.5436 -3.1237 -6.6452 45 1 1.6655 -2.3993 -7.8220 46 1 2.1922 -6.9706 -8.7892 47 1 0.9724 -2.8018 -4.2398 48 1 2.3552 -3.8735 -4.5692 49 1 2.6200 -2.5098 -2.4579 50 1 3.9129 -2.2227 -3.6523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601609322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:07 Heat of formation + Delta-G solvation = 42.988850 kcal Electronic energy + Delta-G solvation = -29735.969492 eV Core-core repulsion = 25799.505740 eV Total energy + Delta-G solvation = -3936.463752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = -1.43 seconds Orbital eigenvalues (eV) -42.12906 -41.38566 -39.26089 -37.22636 -35.93461 -34.50311 -34.18462 -32.87874 -31.87122 -31.07164 -30.22035 -28.47207 -27.22911 -26.14925 -24.72739 -23.73592 -22.68418 -22.12764 -21.65711 -21.10387 -20.46398 -19.09143 -18.87950 -17.70990 -17.38899 -16.60458 -16.51547 -16.28657 -16.09371 -15.98796 -15.61128 -15.39260 -15.23289 -15.01655 -14.82270 -14.49669 -14.41691 -14.02514 -13.96279 -13.61143 -13.56118 -13.38999 -13.18375 -12.98000 -12.93306 -12.78664 -12.52276 -12.41058 -12.32111 -12.20462 -11.97911 -11.83947 -11.80888 -11.42721 -11.40029 -11.13018 -10.76455 -10.33663 -10.16037 -9.56159 -9.21130 -9.03328 -8.26985 -6.29494 1.02150 1.35944 1.37396 1.46754 1.67786 1.74568 1.90021 2.18969 2.35025 2.93644 3.05918 3.16373 3.70000 3.95639 4.01607 4.05254 4.06439 4.17947 4.23988 4.25493 4.34024 4.40434 4.42359 4.43730 4.51062 4.63264 4.69166 4.74306 4.74769 4.82057 4.86292 4.92863 4.94560 4.98173 4.99939 5.05173 5.13420 5.18290 5.29304 5.42125 5.46699 5.54038 5.73476 5.78736 5.89983 6.06874 6.19646 6.32029 6.60654 6.76568 6.79688 7.01070 7.34222 7.61175 8.88779 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.002731 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.549240 B =10250.426480 C =11138.090408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.165 3.835 3 H 0.061 0.939 4 C -0.035 4.035 5 C -0.244 4.244 6 C 0.040 3.960 7 N -0.343 5.343 8 N -0.384 5.384 9 C 0.093 3.907 10 C 0.057 3.943 11 N -0.724 5.724 12 C 0.706 3.294 13 O -0.636 6.636 14 N -0.630 5.630 15 C 0.144 3.856 16 C 0.043 3.957 17 N -0.538 5.538 18 C 0.172 3.828 19 C -0.511 4.511 20 H 0.048 0.952 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.255 1.255 27 C 0.052 3.948 28 C 0.129 3.871 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.196 0.804 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.196 0.804 39 H 0.403 0.597 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.023 0.977 44 H -0.016 1.016 45 H 0.028 0.972 46 H 0.266 0.734 47 H 0.023 0.977 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 9.308 21.288 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 H 0.079 0.921 4 C -0.074 4.074 5 C -0.255 4.255 6 C -0.145 4.145 7 N -0.165 5.165 8 N -0.166 5.166 9 C -0.047 4.047 10 C -0.090 4.090 11 N -0.381 5.381 12 C 0.408 3.592 13 O -0.518 6.518 14 N -0.367 5.367 15 C 0.020 3.980 16 C -0.086 4.086 17 N -0.263 5.263 18 C 0.045 3.955 19 C -0.549 4.549 20 H 0.066 0.934 21 C -0.185 4.185 22 N -0.585 5.585 23 Si 0.764 3.236 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.179 1.179 27 C -0.077 4.077 28 C 0.006 3.994 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.212 0.788 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.213 0.787 39 H 0.241 0.759 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.002 0.998 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.098 0.902 49 H 0.125 0.875 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.932 10.340 21.293 23.750 hybrid contribution -1.834 -0.893 -1.093 2.314 sum 0.098 9.447 20.200 22.301 Atomic orbital electron populations 1.22164 0.94862 1.02698 1.01987 1.20887 0.93489 0.96479 0.83163 0.92065 1.20182 0.88366 1.02225 0.96593 1.20212 0.97203 0.98358 1.09734 1.24186 0.90215 1.00219 0.99882 1.77276 1.20842 1.01468 1.16901 1.48735 1.07162 1.18469 1.42254 1.22113 0.82259 0.98048 1.02318 1.22817 0.84235 1.01068 1.00849 1.45246 1.70891 1.13830 1.08171 1.15982 0.77533 0.84608 0.81114 1.90847 1.60679 1.14559 1.85682 1.47394 1.71532 1.11099 1.06662 1.21449 1.00620 0.95360 0.80563 1.22505 0.96111 0.89818 1.00185 1.61803 1.58565 1.01627 1.04280 1.19938 0.91994 0.92781 0.90828 1.21207 1.15969 0.99622 1.18149 0.93404 1.25732 0.99383 0.94684 0.98706 1.70025 1.43215 1.09181 1.36074 0.85822 0.80002 0.78074 0.79664 1.19248 1.20910 1.17936 1.22332 0.97437 0.99090 0.88811 1.21778 0.99734 0.78832 0.99065 0.89613 0.95170 0.91267 0.87600 0.88842 0.78773 0.89379 0.87459 0.89802 0.78699 0.75869 0.90887 0.89464 0.89220 0.95872 0.99800 0.95410 0.92474 0.95881 0.90196 0.87530 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.48 71.98 0.68 -1.84 16 2 C 0.16 2.84 2.61 44.99 0.12 2.96 16 3 H 0.06 1.43 7.51 -2.38 -0.02 1.41 16 4 C -0.03 -0.39 5.24 29.85 0.16 -0.23 16 5 C -0.24 -3.89 5.10 -20.14 -0.10 -3.99 16 6 C 0.04 0.78 11.96 85.24 1.02 1.80 16 7 N -0.34 -8.06 12.58 -57.02 -0.72 -8.77 16 8 N -0.38 -7.17 4.01 -369.57 -1.48 -8.66 16 9 C 0.09 1.08 11.47 127.77 1.47 2.55 16 10 C 0.06 0.87 11.32 83.54 0.95 1.82 16 11 N -0.72 -14.44 4.63 -457.81 -2.12 -16.57 16 12 C 0.71 20.26 8.27 179.06 1.48 21.75 16 13 O -0.64 -23.25 15.45 -3.99 -0.06 -23.31 16 14 N -0.63 -17.56 3.01 -835.94 -2.52 -20.07 16 15 C 0.14 4.24 6.58 86.35 0.57 4.81 16 16 C 0.04 1.39 5.62 86.38 0.49 1.87 16 17 N -0.54 -20.69 4.62 -899.81 -4.16 -24.85 16 18 C 0.17 7.84 3.79 85.56 0.32 8.16 16 19 C -0.51 -27.85 8.96 25.60 0.23 -27.62 16 20 H 0.05 2.86 7.37 -2.91 -0.02 2.84 16 21 C 0.01 0.71 5.47 84.65 0.46 1.17 16 22 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 23 Si 0.94 42.71 27.47 68.60 1.88 44.59 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.26 -10.97 6.54 99.48 0.65 -10.32 16 27 C 0.05 1.75 5.46 86.38 0.47 2.22 16 28 C 0.13 3.18 6.59 86.35 0.57 3.75 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.20 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.40 5.99 6.10 -92.71 -0.57 5.42 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 2.63 7.10 -2.39 -0.02 2.62 16 42 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H -0.02 -0.73 7.18 -2.39 -0.02 -0.74 16 45 H 0.03 1.26 7.40 -2.39 -0.02 1.24 16 46 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 3.02 6.67 -2.38 -0.02 3.00 16 49 H 0.11 1.80 5.63 -2.39 -0.01 1.79 16 50 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -77.48 399.49 0.31 -77.17 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.31 Total: 17.65 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 8.88 Total: 19.17 kcal Atomic # 7 Polarization: -124.58 SS G_CDS: -10.70 Total: -135.27 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.06 Total: -23.31 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Total: -77.48 0.31 -77.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601609322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.160 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.43 seconds