Wall clock time and date at job start Wed Apr 1 2020 00:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.99272 * 2 1 4 4 O 1.43755 * 109.87445 * 121.07616 * 2 1 3 5 5 C 1.44377 * 106.97233 * 92.90890 * 4 2 1 6 6 C 1.54998 * 103.49052 * 40.06400 * 5 4 2 7 7 C 1.54099 * 109.88158 * 238.90409 * 2 1 3 8 8 H 1.09001 * 110.59631 * 1.34653 * 7 2 1 9 9 C 1.50702 * 110.48519 * 123.93188 * 7 2 1 10 10 N 1.30291 * 126.34497 * 56.24816 * 9 7 2 11 11 N 1.28529 * 110.05332 * 179.97438 * 10 9 7 12 12 C 1.31220 * 109.85989 * 0.02562 * 11 10 9 13 13 N 1.38584 * 126.47087 * 179.97438 * 12 11 10 14 14 C 1.46947 * 111.00149 * 0.02562 * 13 12 11 15 15 C 1.53050 * 109.36354 * 183.19003 * 14 13 12 16 16 N 1.46964 * 109.36372 * 301.59410 * 15 14 13 17 17 C 1.46895 * 110.99832 * 183.18659 * 16 15 14 18 18 C 1.50702 * 109.46770 * 170.00196 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72214 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.46961 * 110.87434 * 59.32144 * 16 15 14 27 27 C 1.46957 * 110.99736 * 123.82537 * 13 12 11 28 28 N 1.36454 * 107.04985 * 0.22318 * 12 11 10 29 29 C 1.46502 * 127.13319 * 179.77526 * 28 12 11 30 30 H 1.08996 * 109.47430 * 181.08765 * 1 2 3 31 31 H 1.09004 * 109.47242 * 301.09297 * 1 2 3 32 32 H 1.09000 * 109.46746 * 61.08790 * 1 2 3 33 33 H 1.08997 * 110.62171 * 281.56182 * 5 4 2 34 34 H 1.09009 * 110.75084 * 158.62574 * 5 4 2 35 35 H 1.08999 * 110.90660 * 204.77694 * 6 5 4 36 36 H 1.08993 * 110.91346 * 81.17192 * 6 5 4 37 37 H 1.08995 * 109.49351 * 63.22309 * 14 13 12 38 38 H 1.08997 * 109.49010 * 303.15421 * 14 13 12 39 39 H 1.09004 * 109.48956 * 181.63242 * 15 14 13 40 40 H 1.09004 * 109.49487 * 61.56311 * 15 14 13 41 41 H 1.09004 * 109.47258 * 50.00519 * 17 16 15 42 42 H 1.08994 * 109.47601 * 290.00111 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.48905 * 60.65158 * 26 16 15 45 45 H 1.09006 * 109.48522 * 180.71003 * 26 16 15 46 46 H 1.09006 * 109.48944 * 296.77638 * 27 13 12 47 47 H 1.09004 * 109.48922 * 56.84202 * 27 13 12 48 48 H 1.09002 * 109.46975 * 90.02285 * 29 28 12 49 49 H 1.08997 * 109.47427 * 210.02657 * 29 28 12 50 50 H 1.09004 * 109.46882 * 330.02510 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6978 1.1579 5 6 2.2278 -2.0713 0.7651 6 6 2.8324 -1.9526 -0.6572 7 6 2.0540 -0.7484 -1.2409 8 1 1.2252 -1.0933 -1.8591 9 6 2.9744 0.1368 -2.0411 10 7 4.0482 0.7307 -1.6031 11 7 4.5951 1.4068 -2.5496 12 6 3.8934 1.2797 -3.6511 13 7 4.1720 1.8626 -4.8772 14 6 5.3944 2.6752 -4.8083 15 6 5.6228 3.3634 -6.1561 16 7 5.7292 2.3458 -7.2111 17 6 6.0244 2.9636 -8.5106 18 6 6.3676 1.8899 -9.5109 19 1 6.3660 0.8523 -9.2112 20 6 6.6774 2.2317 -10.8103 21 7 6.6789 3.4952 -11.1752 22 14 7.0952 0.9002 -12.0519 23 1 5.8536 0.4482 -12.7297 24 1 8.0402 1.4431 -13.0607 25 1 7.7239 -0.2491 -11.3528 26 6 4.5067 1.5331 -7.2798 27 6 4.2783 0.8449 -5.9320 28 7 2.8345 0.4699 -3.3598 29 6 1.7704 0.0430 -4.2718 30 1 -0.3634 -1.0274 0.0195 31 1 -0.3634 0.5307 0.8800 32 1 -0.3633 0.4969 -0.8996 33 1 1.2811 -2.6107 0.7359 34 1 2.9282 -2.5636 1.4400 35 1 2.6431 -2.8560 -1.2369 36 1 3.9002 -1.7393 -0.6095 37 1 6.2452 2.0337 -4.5788 38 1 5.2864 3.4293 -4.0287 39 1 6.5447 3.9438 -6.1165 40 1 4.7848 4.0258 -6.3730 41 1 6.8685 3.6453 -8.4055 42 1 5.1515 3.5169 -8.8567 43 1 6.8972 3.7357 -12.0893 44 1 3.6560 2.1746 -7.5095 45 1 4.6148 0.7790 -8.0595 46 1 5.1164 0.1826 -5.7152 47 1 3.3565 0.2646 -5.9716 48 1 2.0628 -0.8857 -4.7619 49 1 0.8514 -0.1173 -3.7082 50 1 1.6054 0.8145 -5.0240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601856053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:57 Heat of formation + Delta-G solvation = 56.722460 kcal Electronic energy + Delta-G solvation = -29753.933365 eV Core-core repulsion = 25818.065147 eV Total energy + Delta-G solvation = -3935.868218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.69 seconds Orbital eigenvalues (eV) -43.12318 -39.96272 -38.93766 -35.52424 -35.08588 -33.32127 -32.48957 -31.64218 -30.73504 -29.74666 -28.25351 -27.44949 -26.45174 -25.13031 -23.59447 -22.61700 -22.10811 -21.81102 -21.17825 -20.27463 -19.35928 -17.65534 -17.00410 -16.55075 -16.46930 -16.32163 -15.99526 -15.28708 -14.92691 -14.64469 -14.57296 -14.33488 -14.22838 -13.74487 -13.67871 -13.60954 -13.37646 -13.20813 -13.00961 -12.44531 -12.37918 -12.20964 -11.93313 -11.74190 -11.56559 -11.42935 -11.36901 -11.35115 -11.07214 -10.91213 -10.86973 -10.67755 -10.52730 -10.42999 -10.23939 -10.07044 -9.87461 -9.72832 -9.25464 -8.50741 -8.18240 -7.38191 -6.09343 -4.11422 1.63175 2.07801 2.76428 3.26152 3.33374 3.37041 3.48953 3.64237 3.90357 4.15671 4.25880 4.35530 4.38178 4.55286 4.70614 4.73019 4.75941 4.78104 4.86983 4.93547 4.97789 5.04360 5.12422 5.17660 5.26022 5.30366 5.36475 5.40252 5.51957 5.55415 5.58514 5.64231 5.69983 5.73553 5.76211 5.81015 5.90190 6.08378 6.30579 6.35546 6.42614 6.48003 6.55261 6.74159 7.15918 7.19419 7.24955 7.70443 7.97611 8.08058 8.43692 8.74536 8.95507 9.53115 11.01384 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.002246 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.587701 B =12466.215186 C =12813.781262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.087 3.913 3 H 0.100 0.900 4 O -0.362 6.362 5 C 0.048 3.952 6 C -0.144 4.144 7 C -0.024 4.024 8 H 0.098 0.902 9 C 0.166 3.834 10 N -0.268 5.268 11 N -0.323 5.323 12 C 0.375 3.625 13 N -0.453 5.453 14 C 0.078 3.922 15 C 0.054 3.946 16 N -0.539 5.539 17 C 0.194 3.806 18 C -0.510 4.510 19 H 0.062 0.938 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.069 3.931 27 C 0.055 3.945 28 N -0.484 5.484 29 C 0.073 3.927 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.033 0.967 42 H -0.007 1.007 43 H 0.262 0.738 44 H 0.033 0.967 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 -10.506 19.124 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.028 3.972 3 H 0.118 0.882 4 O -0.281 6.281 5 C -0.029 4.029 6 C -0.182 4.182 7 C -0.046 4.046 8 H 0.117 0.883 9 C -0.101 4.101 10 N -0.107 5.107 11 N -0.169 5.169 12 C 0.019 3.981 13 N -0.177 5.177 14 C -0.048 4.048 15 C -0.075 4.075 16 N -0.264 5.264 17 C 0.069 3.931 18 C -0.549 4.549 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.726 3.274 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.060 4.060 27 C -0.072 4.072 28 N -0.180 5.180 29 C -0.071 4.071 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.715 -9.815 20.037 26.190 hybrid contribution -1.048 -0.970 -2.163 2.592 sum -14.763 -10.785 17.874 25.569 Atomic orbital electron populations 1.22310 0.95076 1.02615 1.02879 1.22736 0.93567 0.97440 0.83424 0.88164 1.88966 1.86013 1.20587 1.32540 1.23539 0.99754 0.84626 0.94992 1.23236 1.01962 0.96643 0.96385 1.20927 0.95076 0.93232 0.95334 0.88336 1.24169 0.99760 1.04057 0.82160 1.73944 1.05714 1.08256 1.22819 1.74710 1.23105 1.22403 0.96646 1.22879 0.87249 0.93177 0.94817 1.58942 1.38426 1.21257 0.99037 1.22194 0.87663 0.96278 0.98683 1.22172 1.00891 0.94015 0.90409 1.62325 1.32888 1.23064 1.08115 1.19719 0.95716 0.94663 0.82982 1.21125 1.46522 0.93514 0.93725 0.91937 1.24992 0.95610 0.95500 0.98459 1.69956 1.49107 1.16062 1.18458 0.86503 0.78206 0.81810 0.80928 1.20752 1.21196 1.19792 1.22003 0.92001 0.98146 0.93849 1.22571 1.01034 0.92537 0.91069 1.45992 1.21926 1.39460 1.10642 1.22158 0.88893 1.02225 0.93777 0.92069 0.91280 0.91605 0.92099 0.88513 0.89760 0.89018 0.92044 0.89536 0.89824 0.94784 0.94900 0.98886 0.92840 0.94862 0.88660 0.92680 0.90764 0.90098 0.89326 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.30 37.16 0.35 -0.75 16 2 C 0.09 0.79 3.75 -26.16 -0.10 0.69 16 3 H 0.10 1.11 7.66 -51.93 -0.40 0.71 16 4 O -0.36 -3.73 11.19 -35.23 -0.39 -4.13 16 5 C 0.05 0.34 7.66 38.21 0.29 0.63 16 6 C -0.14 -1.09 6.70 -24.72 -0.17 -1.26 16 7 C -0.02 -0.20 3.07 -90.24 -0.28 -0.48 16 8 H 0.10 0.56 6.58 -51.93 -0.34 0.22 16 9 C 0.17 2.01 6.35 -154.02 -0.98 1.04 16 10 N -0.27 -4.24 12.02 32.99 0.40 -3.84 16 11 N -0.32 -5.53 11.30 30.32 0.34 -5.19 16 12 C 0.37 5.64 7.22 -318.87 -2.30 3.34 16 13 N -0.45 -6.87 4.75 -174.37 -0.83 -7.70 16 14 C 0.08 1.26 4.99 -3.77 -0.02 1.24 16 15 C 0.05 0.96 5.61 -3.76 -0.02 0.94 16 16 N -0.54 -11.12 4.70 -235.90 -1.11 -12.23 16 17 C 0.19 4.86 4.72 -4.98 -0.02 4.84 16 18 C -0.51 -13.79 8.47 -34.44 -0.29 -14.08 16 19 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.07 1.23 5.43 -3.77 -0.02 1.21 16 27 C 0.05 0.80 5.43 -3.77 -0.02 0.78 16 28 N -0.48 -5.71 3.21 -121.46 -0.39 -6.10 16 29 C 0.07 0.53 9.20 59.85 0.55 1.08 16 30 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 8.11 -51.93 -0.42 -0.11 16 34 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.91 7.76 -51.93 -0.40 0.51 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.33 8.02 -51.93 -0.42 0.91 16 39 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.89 8.03 -51.93 -0.42 0.47 16 42 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 1.80 6.79 -51.93 -0.35 1.45 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.07 0.87 5.35 -51.93 -0.28 0.59 16 48 H 0.08 0.49 7.80 -51.93 -0.40 0.08 16 49 H 0.09 0.41 7.25 -51.93 -0.38 0.03 16 50 H 0.10 0.75 7.65 -51.93 -0.40 0.36 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -32.99 390.53 -11.87 -44.86 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -8.36 Total: -2.95 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.12 Total: 0.67 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.85 Total: -60.34 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.39 Total: -4.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.99 -11.87 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601856053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.583 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.69 seconds