Wall clock time and date at job start Wed Apr 1 2020 00:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.99272 * 2 1 4 4 O 1.43755 * 109.87445 * 121.07616 * 2 1 3 5 5 C 1.44377 * 106.97233 * 92.90890 * 4 2 1 6 6 C 1.54998 * 103.49052 * 40.06400 * 5 4 2 7 7 C 1.54099 * 109.88158 * 238.90409 * 2 1 3 8 8 H 1.09001 * 110.59631 * 1.34653 * 7 2 1 9 9 C 1.50702 * 110.48519 * 123.93188 * 7 2 1 10 10 N 1.30291 * 126.34497 * 56.24816 * 9 7 2 11 11 N 1.28529 * 110.05332 * 179.97438 * 10 9 7 12 12 C 1.31220 * 109.85989 * 0.02562 * 11 10 9 13 13 N 1.38584 * 126.47087 * 179.97438 * 12 11 10 14 14 C 1.46947 * 111.00149 * 0.02562 * 13 12 11 15 15 C 1.53050 * 109.36354 * 183.19003 * 14 13 12 16 16 N 1.46964 * 109.36372 * 301.59410 * 15 14 13 17 17 C 1.46895 * 110.99832 * 183.18659 * 16 15 14 18 18 C 1.50702 * 109.46770 * 170.00196 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72214 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 C 1.46961 * 110.87434 * 59.32144 * 16 15 14 27 27 C 1.46957 * 110.99736 * 123.82537 * 13 12 11 28 28 N 1.36454 * 107.04985 * 0.22318 * 12 11 10 29 29 C 1.46502 * 127.13319 * 179.77526 * 28 12 11 30 30 H 1.08996 * 109.47430 * 181.08765 * 1 2 3 31 31 H 1.09004 * 109.47242 * 301.09297 * 1 2 3 32 32 H 1.09000 * 109.46746 * 61.08790 * 1 2 3 33 33 H 1.08997 * 110.62171 * 281.56182 * 5 4 2 34 34 H 1.09009 * 110.75084 * 158.62574 * 5 4 2 35 35 H 1.08999 * 110.90660 * 204.77694 * 6 5 4 36 36 H 1.08993 * 110.91346 * 81.17192 * 6 5 4 37 37 H 1.08995 * 109.49351 * 63.22309 * 14 13 12 38 38 H 1.08997 * 109.49010 * 303.15421 * 14 13 12 39 39 H 1.09004 * 109.48956 * 181.63242 * 15 14 13 40 40 H 1.09004 * 109.49487 * 61.56311 * 15 14 13 41 41 H 1.09004 * 109.47258 * 50.00519 * 17 16 15 42 42 H 1.08994 * 109.47601 * 290.00111 * 17 16 15 43 43 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.48905 * 60.65158 * 26 16 15 45 45 H 1.09006 * 109.48522 * 180.71003 * 26 16 15 46 46 H 1.09006 * 109.48944 * 296.77638 * 27 13 12 47 47 H 1.09004 * 109.48922 * 56.84202 * 27 13 12 48 48 H 1.09002 * 109.46975 * 90.02285 * 29 28 12 49 49 H 1.08997 * 109.47427 * 210.02657 * 29 28 12 50 50 H 1.09004 * 109.46882 * 330.02510 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0187 -0.6978 1.1579 5 6 2.2278 -2.0713 0.7651 6 6 2.8324 -1.9526 -0.6572 7 6 2.0540 -0.7484 -1.2409 8 1 1.2252 -1.0933 -1.8591 9 6 2.9744 0.1368 -2.0411 10 7 4.0482 0.7307 -1.6031 11 7 4.5951 1.4068 -2.5496 12 6 3.8934 1.2797 -3.6511 13 7 4.1720 1.8626 -4.8772 14 6 5.3944 2.6752 -4.8083 15 6 5.6228 3.3634 -6.1561 16 7 5.7292 2.3458 -7.2111 17 6 6.0244 2.9636 -8.5106 18 6 6.3676 1.8899 -9.5109 19 1 6.3660 0.8523 -9.2112 20 6 6.6774 2.2317 -10.8103 21 7 6.6789 3.4952 -11.1752 22 14 7.0952 0.9002 -12.0519 23 1 5.8536 0.4482 -12.7297 24 1 8.0402 1.4431 -13.0607 25 1 7.7239 -0.2491 -11.3528 26 6 4.5067 1.5331 -7.2798 27 6 4.2783 0.8449 -5.9320 28 7 2.8345 0.4699 -3.3598 29 6 1.7704 0.0430 -4.2718 30 1 -0.3634 -1.0274 0.0195 31 1 -0.3634 0.5307 0.8800 32 1 -0.3633 0.4969 -0.8996 33 1 1.2811 -2.6107 0.7359 34 1 2.9282 -2.5636 1.4400 35 1 2.6431 -2.8560 -1.2369 36 1 3.9002 -1.7393 -0.6095 37 1 6.2452 2.0337 -4.5788 38 1 5.2864 3.4293 -4.0287 39 1 6.5447 3.9438 -6.1165 40 1 4.7848 4.0258 -6.3730 41 1 6.8685 3.6453 -8.4055 42 1 5.1515 3.5169 -8.8567 43 1 6.8972 3.7357 -12.0893 44 1 3.6560 2.1746 -7.5095 45 1 4.6148 0.7790 -8.0595 46 1 5.1164 0.1826 -5.7152 47 1 3.3565 0.2646 -5.9716 48 1 2.0628 -0.8857 -4.7619 49 1 0.8514 -0.1173 -3.7082 50 1 1.6054 0.8145 -5.0240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601856053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:39 Heat of formation + Delta-G solvation = 35.111643 kcal Electronic energy + Delta-G solvation = -29754.870480 eV Core-core repulsion = 25818.065147 eV Total energy + Delta-G solvation = -3936.805333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.95 seconds Orbital eigenvalues (eV) -44.15132 -40.69826 -40.23588 -36.97747 -36.07791 -34.67747 -33.92831 -32.18850 -32.10099 -30.97371 -29.47751 -28.51501 -27.26823 -26.73536 -24.84118 -23.82310 -23.32895 -22.66449 -22.34265 -21.23936 -20.65199 -18.60707 -18.47683 -17.83997 -17.52510 -17.20794 -16.90397 -16.60536 -16.15061 -16.01122 -15.79245 -15.58210 -15.34840 -15.14186 -14.85298 -14.35796 -14.26071 -14.10171 -13.84140 -13.62955 -13.41255 -13.23617 -13.04677 -12.86973 -12.82014 -12.62022 -12.59527 -12.38083 -12.34285 -12.25463 -12.21657 -12.08378 -11.91625 -11.66616 -11.51802 -11.31523 -11.13868 -10.89571 -10.62077 -10.58270 -9.35021 -9.10148 -8.20475 -6.30726 0.64058 1.14650 1.41864 1.43854 1.54918 1.69171 2.40216 2.53022 2.88351 3.11358 3.16690 3.18890 3.52335 3.54786 3.66144 3.72958 3.92640 3.95343 3.97623 4.14068 4.21100 4.25515 4.27302 4.29142 4.30875 4.38209 4.39544 4.47425 4.62506 4.67251 4.68852 4.74838 4.83932 4.86252 4.88169 4.90146 4.93377 4.99106 5.08207 5.15482 5.18391 5.22666 5.28640 5.44593 5.53438 5.63615 5.96384 6.02090 6.08965 6.26692 6.54037 6.84553 7.39081 7.68159 8.90625 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.002246 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.587701 B =12466.215186 C =12813.781262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.086 3.914 3 H 0.067 0.933 4 O -0.393 6.393 5 C 0.046 3.954 6 C -0.141 4.141 7 C -0.023 4.023 8 H 0.139 0.861 9 C 0.187 3.813 10 N -0.315 5.315 11 N -0.361 5.361 12 C 0.361 3.639 13 N -0.450 5.450 14 C 0.092 3.908 15 C 0.058 3.942 16 N -0.548 5.548 17 C 0.210 3.790 18 C -0.523 4.523 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.071 3.929 27 C 0.068 3.932 28 N -0.477 5.477 29 C 0.058 3.942 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.005 0.995 42 H -0.033 1.033 43 H 0.264 0.736 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.043 0.957 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.124 0.876 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 -13.541 19.207 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 H 0.086 0.914 4 O -0.313 6.313 5 C -0.030 4.030 6 C -0.179 4.179 7 C -0.043 4.043 8 H 0.156 0.844 9 C -0.082 4.082 10 N -0.153 5.153 11 N -0.206 5.206 12 C 0.003 3.997 13 N -0.174 5.174 14 C -0.035 4.035 15 C -0.070 4.070 16 N -0.274 5.274 17 C 0.084 3.916 18 C -0.561 4.561 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.195 1.195 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.057 4.057 27 C -0.059 4.059 28 N -0.172 5.172 29 C -0.083 4.083 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.023 0.977 42 H -0.015 1.015 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.130 0.870 48 H 0.120 0.880 49 H 0.143 0.857 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.336 -12.869 20.142 28.952 hybrid contribution -0.282 -0.033 -2.075 2.094 sum -16.618 -12.902 18.068 27.732 Atomic orbital electron populations 1.22259 0.92624 1.03981 1.03290 1.22710 0.95300 0.95857 0.83431 0.91442 1.88935 1.86458 1.22393 1.33470 1.23746 1.01291 0.83416 0.94586 1.23227 1.00027 0.97400 0.97288 1.21224 0.95443 0.92567 0.95106 0.84351 1.24878 0.98645 1.02355 0.82309 1.73871 1.07951 1.10083 1.23399 1.74586 1.24741 1.23571 0.97656 1.22745 0.88461 0.94426 0.94086 1.58928 1.37615 1.21413 0.99483 1.21952 0.87936 0.96280 0.97332 1.22160 1.00854 0.93609 0.90405 1.62229 1.34962 1.23648 1.06521 1.19352 0.93484 0.93786 0.85007 1.21429 1.46315 0.93916 0.94417 0.91669 1.25910 0.95348 0.97774 1.00593 1.70088 1.50069 1.18213 1.19044 0.85382 0.78243 0.78855 0.78129 1.19518 1.21095 1.19002 1.21984 0.90552 0.97471 0.95716 1.22461 1.02452 0.91977 0.88987 1.46224 1.21751 1.38206 1.11000 1.22615 0.88967 1.02929 0.93799 0.90085 0.91940 0.90262 0.89223 0.88102 0.86795 0.92094 0.93395 0.88957 0.89976 0.94872 0.97707 1.01502 0.92695 0.95002 0.89637 0.93871 0.86990 0.88018 0.85746 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.30 71.98 0.67 -0.91 16 2 C 0.09 1.40 3.75 30.96 0.12 1.52 16 3 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 4 O -0.39 -7.65 11.19 -148.98 -1.67 -9.32 16 5 C 0.05 0.53 7.66 72.67 0.56 1.09 16 6 C -0.14 -1.78 6.70 31.89 0.21 -1.57 16 7 C -0.02 -0.31 3.07 -10.55 -0.03 -0.34 16 8 H 0.14 0.80 6.58 -2.39 -0.02 0.78 16 9 C 0.19 4.24 6.35 137.64 0.87 5.11 16 10 N -0.31 -10.05 12.02 -49.54 -0.60 -10.64 16 11 N -0.36 -12.54 11.30 -58.00 -0.66 -13.19 16 12 C 0.36 10.58 7.22 260.11 1.88 12.46 16 13 N -0.45 -13.39 4.75 -705.57 -3.35 -16.74 16 14 C 0.09 3.01 4.99 86.31 0.43 3.44 16 15 C 0.06 2.13 5.61 86.31 0.48 2.61 16 16 N -0.55 -23.20 4.70 -900.26 -4.23 -27.44 16 17 C 0.21 10.93 4.72 85.56 0.40 11.33 16 18 C -0.52 -28.66 8.47 25.60 0.22 -28.44 16 19 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 20 C 0.00 0.11 5.46 84.66 0.46 0.57 16 21 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 22 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 C 0.07 2.54 5.43 86.31 0.47 3.00 16 27 C 0.07 1.91 5.43 86.31 0.47 2.37 16 28 N -0.48 -10.12 3.21 -538.17 -1.73 -11.85 16 29 C 0.06 0.60 9.20 127.77 1.18 1.77 16 30 H 0.08 0.48 8.11 -2.39 -0.02 0.46 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.55 8.11 -2.39 -0.02 0.53 16 34 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.17 7.76 -2.39 -0.02 1.15 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 2.91 8.02 -2.39 -0.02 2.89 16 39 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.00 0.27 8.03 -2.38 -0.02 0.25 16 42 H -0.03 -1.84 8.12 -2.39 -0.02 -1.86 16 43 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 3.20 6.79 -2.38 -0.02 3.19 16 46 H 0.04 1.33 8.14 -2.38 -0.02 1.32 16 47 H 0.11 2.29 5.35 -2.39 -0.01 2.28 16 48 H 0.10 0.70 7.80 -2.39 -0.02 0.68 16 49 H 0.12 0.43 7.25 -2.39 -0.02 0.41 16 50 H 0.10 1.11 7.65 -2.38 -0.02 1.10 16 Total: -1.00 -75.68 390.53 -0.61 -76.29 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.92 Total: 8.77 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 8.38 Total: 14.02 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -10.28 Total: -134.81 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -1.67 Total: -9.32 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -75.68 -0.61 -76.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601856053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.401 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.95 seconds