Wall clock time and date at job start Wed Apr 1 2020 00:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.82907 * 2 1 4 4 O 1.43237 * 109.83033 * 239.01940 * 2 1 3 5 5 C 1.43646 * 109.97310 * 238.77778 * 4 2 1 6 6 C 1.54952 * 105.13610 * 24.42810 * 5 4 2 7 7 C 1.54385 * 109.83047 * 120.88972 * 2 1 3 8 8 H 1.09001 * 110.84634 * 216.54993 * 7 2 1 9 9 C 1.50705 * 110.84444 * 339.96194 * 7 2 1 10 10 N 1.30292 * 126.34716 * 60.03031 * 9 7 2 11 11 N 1.28527 * 110.05563 * 179.97438 * 10 9 7 12 12 C 1.31223 * 109.85838 * 359.97438 * 11 10 9 13 13 N 1.38581 * 126.47175 * 179.97438 * 12 11 10 14 14 C 1.46951 * 110.99908 * 0.02562 * 13 12 11 15 15 C 1.53054 * 109.36519 * 183.18657 * 14 13 12 16 16 N 1.46951 * 109.36538 * 301.60322 * 15 14 13 17 17 C 1.46904 * 111.00106 * 183.18602 * 16 15 14 18 18 C 1.50701 * 109.47195 * 170.00137 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27796 * 18 17 16 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 C 1.46951 * 110.88318 * 59.31733 * 16 15 14 27 27 C 1.46951 * 111.00016 * 123.82410 * 13 12 11 28 28 N 1.36450 * 107.05265 * 0.22475 * 12 11 10 29 29 C 1.46504 * 127.13521 * 179.77536 * 28 12 11 30 30 H 1.09001 * 109.47209 * 299.11619 * 1 2 3 31 31 H 1.09003 * 109.47219 * 59.11248 * 1 2 3 32 32 H 1.08998 * 109.47301 * 179.11458 * 1 2 3 33 33 H 1.09004 * 110.31107 * 143.33961 * 5 4 2 34 34 H 1.09003 * 110.31365 * 265.51337 * 5 4 2 35 35 H 1.09004 * 111.12282 * 205.63980 * 6 5 4 36 36 H 1.08994 * 111.12685 * 81.47438 * 6 5 4 37 37 H 1.08999 * 109.49376 * 63.22599 * 14 13 12 38 38 H 1.09003 * 109.49309 * 303.15308 * 14 13 12 39 39 H 1.08995 * 109.49094 * 181.62872 * 15 14 13 40 40 H 1.09005 * 109.50009 * 61.57909 * 15 14 13 41 41 H 1.09000 * 109.47038 * 49.99280 * 17 16 15 42 42 H 1.09007 * 109.46566 * 289.99812 * 17 16 15 43 43 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.49376 * 60.64336 * 26 16 15 45 45 H 1.09003 * 109.49309 * 180.71628 * 26 16 15 46 46 H 1.09003 * 109.48536 * 296.77576 * 27 13 12 47 47 H 1.08994 * 109.49011 * 56.81825 * 27 13 12 48 48 H 1.08999 * 109.46615 * 90.02891 * 29 28 12 49 49 H 1.08997 * 109.46961 * 210.02284 * 29 28 12 50 50 H 1.08997 * 109.47025 * 330.02453 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0253 0.0000 4 8 2.0158 -0.6936 -1.1552 5 6 2.8406 -1.7988 -0.7531 6 6 2.3679 -2.1565 0.6785 7 6 2.0537 -0.7456 1.2463 8 1 2.9551 -0.2698 1.6326 9 6 0.9909 -0.8209 2.3122 10 7 -0.1778 -1.3857 2.1988 11 7 -0.8331 -1.2670 3.2981 12 6 -0.1115 -0.6151 4.1791 13 7 -0.4841 -0.2960 5.4752 14 6 -1.8365 -0.7892 5.7709 15 6 -2.2405 -0.3488 7.1799 16 7 -1.2687 -0.8706 8.1509 17 6 -1.6637 -0.5323 9.5248 18 6 -0.7911 -1.2828 10.4976 19 1 -0.0205 -1.9451 10.1319 20 6 -0.9808 -1.1285 11.8545 21 7 -0.2229 -1.7877 12.7035 22 14 -2.3141 0.0167 12.4871 23 1 -3.5816 -0.7402 12.6475 24 1 -1.9032 0.5778 13.7992 25 1 -2.5175 1.1229 11.5175 26 6 0.0836 -0.3773 7.8552 27 6 0.4876 -0.8178 6.4462 28 7 1.0729 -0.3060 3.5762 29 6 2.1997 0.4241 4.1625 30 1 -0.3634 0.5000 0.8978 31 1 -0.3634 0.5276 -0.8819 32 1 -0.3634 -1.0275 -0.0159 33 1 2.6917 -2.6455 -1.4233 34 1 3.8899 -1.5037 -0.7424 35 1 3.1635 -2.6399 1.2456 36 1 1.4729 -2.7780 0.6529 37 1 -1.8474 -1.8776 5.7130 38 1 -2.5398 -0.3791 5.0460 39 1 -3.2317 -0.7381 7.4123 40 1 -2.2563 0.7399 7.2303 41 1 -2.7059 -0.8103 9.6821 42 1 -1.5458 0.5398 9.6832 43 1 -0.3560 -1.6790 13.6581 44 1 0.0946 0.7111 7.9130 45 1 0.7869 -0.7874 8.5800 46 1 0.5031 -1.9065 6.3959 47 1 1.4789 -0.4289 6.2135 48 1 2.8801 -0.2808 4.6404 49 1 2.7292 0.9654 3.3785 50 1 1.8282 1.1306 4.9047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601856055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:20 Heat of formation + Delta-G solvation = 70.654662 kcal Electronic energy + Delta-G solvation = -29988.465540 eV Core-core repulsion = 26053.201468 eV Total energy + Delta-G solvation = -3935.264072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -43.21838 -39.97045 -39.02322 -35.65973 -35.13541 -33.55041 -32.46794 -31.62853 -30.80854 -29.67809 -28.20305 -27.66193 -26.59821 -25.24705 -23.72418 -22.69979 -22.19418 -21.74491 -21.03861 -20.08421 -19.44155 -17.47645 -17.18505 -16.84290 -16.59378 -16.31165 -15.99972 -15.51433 -15.03161 -14.76783 -14.57828 -14.33384 -14.04596 -13.98304 -13.82053 -13.41489 -13.32186 -13.20320 -12.81589 -12.54671 -12.47604 -12.38314 -12.14612 -11.73380 -11.69837 -11.56689 -11.29951 -11.21548 -11.09431 -11.01211 -10.91954 -10.63972 -10.43022 -10.33059 -10.25113 -9.95885 -9.89335 -9.77360 -9.35688 -8.64339 -8.21296 -7.53539 -6.12921 -4.11217 1.58692 2.04264 2.71551 3.23553 3.31331 3.32668 3.37655 3.60377 3.91059 4.10393 4.25854 4.35253 4.39354 4.48740 4.55665 4.67927 4.74461 4.79129 4.81889 4.95691 5.04706 5.10721 5.18356 5.23250 5.24034 5.32893 5.36602 5.45267 5.50708 5.52514 5.58326 5.63101 5.67201 5.77397 5.82698 5.84577 6.01108 6.16219 6.20049 6.30377 6.38184 6.42931 6.61979 6.66067 6.77647 6.88372 7.11206 7.48290 7.75200 7.88833 8.55373 8.69523 8.93760 9.48415 10.99926 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.002294 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.110807 B =12201.639415 C =12579.499088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 H 0.080 0.920 4 O -0.374 6.374 5 C 0.052 3.948 6 C -0.143 4.143 7 C -0.029 4.029 8 H 0.099 0.901 9 C 0.171 3.829 10 N -0.265 5.265 11 N -0.324 5.324 12 C 0.374 3.626 13 N -0.453 5.453 14 C 0.079 3.921 15 C 0.051 3.949 16 N -0.529 5.529 17 C 0.163 3.837 18 C -0.512 4.512 19 H 0.080 0.920 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.268 1.268 26 C 0.069 3.931 27 C 0.055 3.945 28 N -0.483 5.483 29 C 0.072 3.928 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.027 0.973 42 H -0.009 1.009 43 H 0.264 0.736 44 H 0.034 0.966 45 H 0.101 0.899 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 4.973 -23.732 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.098 0.902 4 O -0.293 6.293 5 C -0.024 4.024 6 C -0.181 4.181 7 C -0.050 4.050 8 H 0.117 0.883 9 C -0.096 4.096 10 N -0.105 5.105 11 N -0.169 5.169 12 C 0.018 3.982 13 N -0.178 5.178 14 C -0.048 4.048 15 C -0.078 4.078 16 N -0.254 5.254 17 C 0.037 3.963 18 C -0.551 4.551 19 H 0.098 0.902 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.193 1.193 26 C -0.060 4.060 27 C -0.072 4.072 28 N -0.179 5.179 29 C -0.071 4.071 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.009 0.991 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.701 4.272 -24.261 25.530 hybrid contribution 0.532 1.498 1.540 2.213 sum 7.233 5.770 -22.721 24.533 Atomic orbital electron populations 1.22223 0.93339 1.04388 1.01314 1.22600 0.95843 0.95177 0.83053 0.90219 1.88466 1.67465 1.43868 1.29538 1.23377 0.94486 0.89698 0.94887 1.23342 1.03427 0.95523 0.95836 1.21083 0.93971 0.98452 0.91477 0.88331 1.23917 0.97890 1.02265 0.85512 1.74018 1.01732 1.18236 1.16483 1.74703 1.25662 1.18643 0.97932 1.22824 0.84202 0.96746 0.94406 1.58939 1.06128 1.56510 0.96174 1.22166 0.85577 0.99818 0.97212 1.22219 0.97222 0.97724 0.90598 1.62134 1.00628 1.58671 1.03992 1.20172 0.96978 0.94566 0.84587 1.20996 1.18079 1.26442 0.89545 0.90189 1.24898 0.95972 0.95578 0.96817 1.69889 1.39419 1.42048 1.02409 0.86862 0.82664 0.81728 0.78509 1.20067 1.21179 1.19257 1.22041 0.93197 0.97634 0.93146 1.22566 0.93677 0.99153 0.91809 1.45977 1.15108 1.44968 1.11824 1.22170 0.87388 0.97227 1.00330 0.92076 0.92575 0.89941 0.89253 0.91946 0.89518 0.88686 0.91898 0.89446 0.89800 0.94737 0.95508 0.99130 0.92582 0.94806 0.88074 0.92492 0.90574 0.89999 0.89277 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.07 37.15 0.30 -1.36 16 2 C 0.09 0.82 4.10 -26.01 -0.11 0.71 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 O -0.37 -3.63 11.02 -35.23 -0.39 -4.01 16 5 C 0.05 0.35 7.78 38.19 0.30 0.65 16 6 C -0.14 -1.06 6.60 -24.48 -0.16 -1.22 16 7 C -0.03 -0.23 3.31 -89.82 -0.30 -0.53 16 8 H 0.10 0.56 7.11 -51.93 -0.37 0.19 16 9 C 0.17 1.95 5.55 -154.01 -0.86 1.10 16 10 N -0.27 -3.83 9.07 32.99 0.30 -3.53 16 11 N -0.32 -5.19 11.30 30.31 0.34 -4.85 16 12 C 0.37 5.35 7.22 -318.87 -2.30 3.04 16 13 N -0.45 -6.55 4.75 -174.36 -0.83 -7.38 16 14 C 0.08 1.19 4.99 -3.77 -0.02 1.17 16 15 C 0.05 0.85 5.61 -3.77 -0.02 0.82 16 16 N -0.53 -10.46 4.70 -235.91 -1.11 -11.57 16 17 C 0.16 3.77 3.79 -4.97 -0.02 3.75 16 18 C -0.51 -13.94 9.03 -34.44 -0.31 -14.25 16 19 H 0.08 2.36 7.38 -52.49 -0.39 1.97 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 22 Si 0.88 20.87 27.46 -169.99 -4.67 16.20 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.15 6.55 56.52 0.37 -5.78 16 26 C 0.07 1.19 5.43 -3.77 -0.02 1.17 16 27 C 0.05 0.78 5.43 -3.77 -0.02 0.76 16 28 N -0.48 -5.43 3.21 -121.46 -0.39 -5.82 16 29 C 0.07 0.51 9.18 59.85 0.55 1.06 16 30 H 0.06 0.74 6.66 -51.93 -0.35 0.39 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.01 7.06 -51.93 -0.37 0.64 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.25 8.02 -51.93 -0.42 0.84 16 39 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.03 0.62 7.45 -51.93 -0.39 0.24 16 42 H -0.01 -0.21 7.19 -51.93 -0.37 -0.58 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.94 6.79 -51.93 -0.35 1.59 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.87 5.35 -51.93 -0.28 0.59 16 48 H 0.08 0.48 7.80 -51.93 -0.40 0.08 16 49 H 0.09 0.40 7.33 -51.93 -0.38 0.02 16 50 H 0.10 0.72 7.65 -51.93 -0.40 0.32 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -32.65 381.05 -11.57 -44.21 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.26 Total: -1.75 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.08 Total: -1.26 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.91 Total: -59.13 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.39 Total: -4.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.65 -11.57 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601856055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.869 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds