Wall clock time and date at job start Wed Apr 1 2020 00:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.82907 * 2 1 4 4 O 1.43237 * 109.83033 * 239.01940 * 2 1 3 5 5 C 1.43646 * 109.97310 * 238.77778 * 4 2 1 6 6 C 1.54952 * 105.13610 * 24.42810 * 5 4 2 7 7 C 1.54385 * 109.83047 * 120.88972 * 2 1 3 8 8 H 1.09001 * 110.84634 * 216.54993 * 7 2 1 9 9 C 1.50705 * 110.84444 * 339.96194 * 7 2 1 10 10 N 1.30292 * 126.34716 * 60.03031 * 9 7 2 11 11 N 1.28527 * 110.05563 * 179.97438 * 10 9 7 12 12 C 1.31223 * 109.85838 * 359.97438 * 11 10 9 13 13 N 1.38581 * 126.47175 * 179.97438 * 12 11 10 14 14 C 1.46951 * 110.99908 * 0.02562 * 13 12 11 15 15 C 1.53054 * 109.36519 * 183.18657 * 14 13 12 16 16 N 1.46951 * 109.36538 * 301.60322 * 15 14 13 17 17 C 1.46904 * 111.00106 * 183.18602 * 16 15 14 18 18 C 1.50701 * 109.47195 * 170.00137 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27796 * 18 17 16 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 17 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 C 1.46951 * 110.88318 * 59.31733 * 16 15 14 27 27 C 1.46951 * 111.00016 * 123.82410 * 13 12 11 28 28 N 1.36450 * 107.05265 * 0.22475 * 12 11 10 29 29 C 1.46504 * 127.13521 * 179.77536 * 28 12 11 30 30 H 1.09001 * 109.47209 * 299.11619 * 1 2 3 31 31 H 1.09003 * 109.47219 * 59.11248 * 1 2 3 32 32 H 1.08998 * 109.47301 * 179.11458 * 1 2 3 33 33 H 1.09004 * 110.31107 * 143.33961 * 5 4 2 34 34 H 1.09003 * 110.31365 * 265.51337 * 5 4 2 35 35 H 1.09004 * 111.12282 * 205.63980 * 6 5 4 36 36 H 1.08994 * 111.12685 * 81.47438 * 6 5 4 37 37 H 1.08999 * 109.49376 * 63.22599 * 14 13 12 38 38 H 1.09003 * 109.49309 * 303.15308 * 14 13 12 39 39 H 1.08995 * 109.49094 * 181.62872 * 15 14 13 40 40 H 1.09005 * 109.50009 * 61.57909 * 15 14 13 41 41 H 1.09000 * 109.47038 * 49.99280 * 17 16 15 42 42 H 1.09007 * 109.46566 * 289.99812 * 17 16 15 43 43 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.49376 * 60.64336 * 26 16 15 45 45 H 1.09003 * 109.49309 * 180.71628 * 26 16 15 46 46 H 1.09003 * 109.48536 * 296.77576 * 27 13 12 47 47 H 1.08994 * 109.49011 * 56.81825 * 27 13 12 48 48 H 1.08999 * 109.46615 * 90.02891 * 29 28 12 49 49 H 1.08997 * 109.46961 * 210.02284 * 29 28 12 50 50 H 1.08997 * 109.47025 * 330.02453 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8997 1.0253 0.0000 4 8 2.0158 -0.6936 -1.1552 5 6 2.8406 -1.7988 -0.7531 6 6 2.3679 -2.1565 0.6785 7 6 2.0537 -0.7456 1.2463 8 1 2.9551 -0.2698 1.6326 9 6 0.9909 -0.8209 2.3122 10 7 -0.1778 -1.3857 2.1988 11 7 -0.8331 -1.2670 3.2981 12 6 -0.1115 -0.6151 4.1791 13 7 -0.4841 -0.2960 5.4752 14 6 -1.8365 -0.7892 5.7709 15 6 -2.2405 -0.3488 7.1799 16 7 -1.2687 -0.8706 8.1509 17 6 -1.6637 -0.5323 9.5248 18 6 -0.7911 -1.2828 10.4976 19 1 -0.0205 -1.9451 10.1319 20 6 -0.9808 -1.1285 11.8545 21 7 -0.2229 -1.7877 12.7035 22 14 -2.3141 0.0167 12.4871 23 1 -3.5816 -0.7402 12.6475 24 1 -1.9032 0.5778 13.7992 25 1 -2.5175 1.1229 11.5175 26 6 0.0836 -0.3773 7.8552 27 6 0.4876 -0.8178 6.4462 28 7 1.0729 -0.3060 3.5762 29 6 2.1997 0.4241 4.1625 30 1 -0.3634 0.5000 0.8978 31 1 -0.3634 0.5276 -0.8819 32 1 -0.3634 -1.0275 -0.0159 33 1 2.6917 -2.6455 -1.4233 34 1 3.8899 -1.5037 -0.7424 35 1 3.1635 -2.6399 1.2456 36 1 1.4729 -2.7780 0.6529 37 1 -1.8474 -1.8776 5.7130 38 1 -2.5398 -0.3791 5.0460 39 1 -3.2317 -0.7381 7.4123 40 1 -2.2563 0.7399 7.2303 41 1 -2.7059 -0.8103 9.6821 42 1 -1.5458 0.5398 9.6832 43 1 -0.3560 -1.6790 13.6581 44 1 0.0946 0.7111 7.9130 45 1 0.7869 -0.7874 8.5800 46 1 0.5031 -1.9065 6.3959 47 1 1.4789 -0.4289 6.2135 48 1 2.8801 -0.2808 4.6404 49 1 2.7292 0.9654 3.3785 50 1 1.8282 1.1306 4.9047 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601856055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:17 Heat of formation + Delta-G solvation = 48.968287 kcal Electronic energy + Delta-G solvation = -29989.405932 eV Core-core repulsion = 26053.201468 eV Total energy + Delta-G solvation = -3936.204464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.18244 -40.72697 -40.22630 -37.02721 -36.05563 -34.70653 -34.14491 -32.29206 -32.09109 -31.07511 -29.41703 -28.58580 -27.33818 -26.76304 -24.91000 -23.57203 -23.22551 -22.94325 -22.32624 -21.05404 -20.60489 -18.95083 -18.44762 -17.85295 -17.54152 -17.10818 -16.88106 -16.56315 -16.22608 -16.06064 -15.83854 -15.76096 -15.50199 -14.97673 -14.75841 -14.53486 -14.36839 -14.02328 -13.96984 -13.61141 -13.57780 -13.32747 -13.25314 -13.12765 -12.91211 -12.60252 -12.49999 -12.35223 -12.25416 -12.21432 -11.92957 -11.87008 -11.84752 -11.76536 -11.48592 -11.43708 -11.13260 -10.82542 -10.77541 -10.51481 -9.31642 -9.10170 -8.28132 -6.31661 0.64702 1.16470 1.36958 1.37276 1.47693 1.70848 2.34699 2.53468 2.76679 3.03598 3.11481 3.20451 3.48102 3.54243 3.66692 3.73778 3.87765 3.94315 3.97839 4.10991 4.19558 4.24883 4.27388 4.29010 4.31033 4.37619 4.40273 4.49186 4.62182 4.67578 4.71146 4.75034 4.78227 4.83664 4.87067 4.87681 4.92532 4.95569 5.00931 5.04527 5.09868 5.17278 5.34006 5.46880 5.51695 5.56798 5.92889 6.04599 6.11214 6.28233 6.59032 6.74264 7.32178 7.69721 8.88032 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031879 B = 0.002294 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.110807 B =12201.639415 C =12579.499088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 H 0.100 0.900 4 O -0.394 6.394 5 C 0.051 3.949 6 C -0.140 4.140 7 C -0.027 4.027 8 H 0.136 0.864 9 C 0.189 3.811 10 N -0.300 5.300 11 N -0.358 5.358 12 C 0.359 3.641 13 N -0.449 5.449 14 C 0.089 3.911 15 C 0.056 3.944 16 N -0.549 5.549 17 C 0.173 3.827 18 C -0.515 4.515 19 H 0.040 0.960 20 C 0.010 3.990 21 N -0.947 5.947 22 Si 0.945 3.055 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.250 1.250 26 C 0.072 3.928 27 C 0.068 3.932 28 N -0.477 5.477 29 C 0.058 3.942 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.042 0.958 41 H 0.030 0.970 42 H -0.007 1.007 43 H 0.267 0.733 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.109 0.891 48 H 0.098 0.902 49 H 0.123 0.877 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 6.977 -25.190 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.035 3.965 3 H 0.118 0.882 4 O -0.314 6.314 5 C -0.025 4.025 6 C -0.179 4.179 7 C -0.048 4.048 8 H 0.154 0.846 9 C -0.079 4.079 10 N -0.139 5.139 11 N -0.203 5.203 12 C 0.001 3.999 13 N -0.173 5.173 14 C -0.038 4.038 15 C -0.072 4.072 16 N -0.274 5.274 17 C 0.046 3.954 18 C -0.553 4.553 19 H 0.059 0.941 20 C -0.188 4.188 21 N -0.587 5.587 22 Si 0.769 3.231 23 H -0.193 1.193 24 H -0.209 1.209 25 H -0.173 1.173 26 C -0.056 4.056 27 C -0.059 4.059 28 N -0.172 5.172 29 C -0.083 4.083 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.011 0.989 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.056 0.944 47 H 0.127 0.873 48 H 0.117 0.883 49 H 0.141 0.859 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.856 6.283 -25.755 27.650 hybrid contribution 0.278 0.793 1.862 2.042 sum 8.133 7.076 -23.894 26.213 Atomic orbital electron populations 1.22123 0.95318 1.02724 1.00520 1.22610 0.94258 0.96302 0.83280 0.88211 1.88445 1.68098 1.44742 1.30096 1.23559 0.95322 0.89249 0.94356 1.23320 1.03012 0.94877 0.96682 1.21344 0.94067 0.99183 0.90196 0.84592 1.24535 0.97471 0.99950 0.85949 1.73975 1.03365 1.20189 1.16381 1.74596 1.27226 1.19677 0.98847 1.22727 0.85552 0.97600 0.94000 1.58939 1.05581 1.56308 0.96434 1.21996 0.86569 0.98728 0.96513 1.22242 0.96710 0.98068 0.90223 1.62018 1.02367 1.59841 1.03139 1.19922 0.96036 0.93749 0.85678 1.21221 1.17599 1.25821 0.90683 0.94136 1.25808 0.98518 0.97392 0.97074 1.70042 1.41662 1.44196 1.02848 0.85744 0.79397 0.79883 0.78084 1.19279 1.20888 1.17335 1.21949 0.91529 0.97729 0.94399 1.22415 0.95256 0.98062 0.90122 1.46202 1.15036 1.44479 1.11476 1.22583 0.86398 0.97609 1.01663 0.93708 0.92399 0.92079 0.88733 0.89382 0.87440 0.91304 0.93641 0.88584 0.89067 0.93937 0.95187 0.98925 0.92446 0.94121 0.90668 0.94366 0.87262 0.88337 0.85882 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.07 71.98 0.58 -2.55 16 2 C 0.09 1.46 4.10 31.06 0.13 1.58 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 O -0.39 -6.77 11.02 -148.98 -1.64 -8.41 16 5 C 0.05 0.55 7.78 72.65 0.56 1.12 16 6 C -0.14 -1.75 6.60 32.05 0.21 -1.54 16 7 C -0.03 -0.36 3.31 -10.28 -0.03 -0.39 16 8 H 0.14 0.82 7.11 -2.39 -0.02 0.80 16 9 C 0.19 3.99 5.55 137.64 0.76 4.75 16 10 N -0.30 -8.67 9.07 -49.53 -0.45 -9.12 16 11 N -0.36 -11.57 11.30 -58.00 -0.66 -12.22 16 12 C 0.36 9.93 7.22 260.11 1.88 11.81 16 13 N -0.45 -12.55 4.75 -705.55 -3.35 -15.90 16 14 C 0.09 2.67 4.99 86.31 0.43 3.10 16 15 C 0.06 1.79 5.61 86.31 0.48 2.28 16 16 N -0.55 -21.69 4.70 -900.27 -4.23 -25.92 16 17 C 0.17 7.94 3.79 85.56 0.32 8.27 16 18 C -0.51 -28.68 9.03 25.60 0.23 -28.45 16 19 H 0.04 2.51 7.38 -2.91 -0.02 2.49 16 20 C 0.01 0.54 5.47 84.65 0.46 1.01 16 21 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 22 Si 0.95 42.81 27.46 68.60 1.88 44.70 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.25 -10.49 6.55 99.48 0.65 -9.84 16 26 C 0.07 2.52 5.43 86.31 0.47 2.99 16 27 C 0.07 1.90 5.43 86.31 0.47 2.37 16 28 N -0.48 -9.67 3.21 -538.17 -1.73 -11.39 16 29 C 0.06 0.61 9.18 127.77 1.17 1.78 16 30 H 0.04 1.07 6.66 -2.39 -0.02 1.05 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.54 7.06 -2.39 -0.02 1.52 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 1.24 7.85 -2.39 -0.02 1.22 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.10 2.72 8.02 -2.39 -0.02 2.70 16 39 H 0.09 2.76 8.07 -2.39 -0.02 2.74 16 40 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.03 1.36 7.45 -2.39 -0.02 1.34 16 42 H -0.01 -0.31 7.19 -2.38 -0.02 -0.33 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 2.99 6.79 -2.39 -0.02 2.98 16 46 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.11 2.29 5.35 -2.39 -0.01 2.27 16 48 H 0.10 0.75 7.80 -2.39 -0.02 0.73 16 49 H 0.12 0.47 7.33 -2.39 -0.02 0.45 16 50 H 0.10 1.10 7.65 -2.39 -0.02 1.08 16 Total: -1.00 -74.22 381.05 -0.87 -75.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.87 Total: 12.58 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 8.13 Total: 8.13 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -10.12 Total: -132.07 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -1.64 Total: -8.41 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -74.22 -0.87 -75.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601856055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.050 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds