Wall clock time and date at job start Tue Mar 31 2020 23:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46612 * 2 1 4 4 C 1.53003 * 109.47353 * 240.00213 * 2 1 3 5 5 C 1.52997 * 109.47067 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47602 * 59.99435 * 5 4 2 7 7 C 1.53003 * 109.47371 * 300.00379 * 6 5 4 8 8 H 1.08996 * 109.46576 * 299.99685 * 7 6 5 9 9 N 1.46497 * 109.47218 * 179.97438 * 7 6 5 10 10 C 1.34780 * 119.99566 * 85.00262 * 9 7 6 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.35317 * 125.86734 * 124.99716 * 13 12 10 15 15 C 1.35351 * 106.17555 * 179.97438 * 14 13 12 16 16 C 1.50703 * 126.74773 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.46915 * 95.00283 * 16 15 14 18 18 C 1.36940 * 119.99762 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99944 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00139 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47631 * 89.99821 * 22 20 18 24 24 H 1.48502 * 109.47257 * 209.99980 * 22 20 18 25 25 H 1.48502 * 109.46968 * 329.99814 * 22 20 18 26 26 N 1.33764 * 106.49572 * 0.02562 * 15 14 13 27 27 N 1.28638 * 108.88917 * 359.73267 * 26 15 14 28 28 C 1.52997 * 109.47253 * 119.99919 * 2 1 3 29 29 H 1.09007 * 109.46591 * 300.00275 * 28 2 1 30 30 C 1.52999 * 109.47392 * 59.99998 * 28 2 1 31 31 H 1.08995 * 109.47539 * 300.00010 * 1 2 3 32 32 H 1.09004 * 109.47207 * 60.00257 * 1 2 3 33 33 H 1.09005 * 109.46612 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46570 * 299.99591 * 4 2 1 35 35 H 1.09001 * 109.46896 * 59.99401 * 4 2 1 36 36 H 1.08997 * 109.46782 * 179.97438 * 5 4 2 37 37 H 1.09006 * 109.47022 * 299.99229 * 5 4 2 38 38 H 1.08998 * 109.47271 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.47100 * 59.99841 * 6 5 4 40 40 H 0.96995 * 120.00423 * 264.99567 * 9 7 6 41 41 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 42 42 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 43 43 H 1.08003 * 126.91145 * 0.02927 * 14 13 12 44 44 H 1.09001 * 109.46704 * 214.99685 * 16 15 14 45 45 H 1.08998 * 109.47102 * 335.00277 * 16 15 14 46 46 H 0.97003 * 120.00185 * 0.02562 * 17 16 15 47 47 H 0.96992 * 120.00353 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.47523 * 180.02562 * 30 28 2 49 49 H 1.09006 * 109.47052 * 300.00515 * 30 28 2 50 50 H 1.09006 * 109.46598 * 59.99902 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7217 -1.2489 6 6 4.0796 -1.4432 0.0003 7 6 3.5695 -0.7220 1.2496 8 1 3.9332 0.3055 1.2497 9 7 4.0570 -1.4132 2.4457 10 6 5.2789 -1.1282 2.9378 11 8 5.9752 -0.2998 2.3901 12 6 5.7806 -1.8396 4.1679 13 7 7.1239 -1.3568 4.4975 14 6 7.5116 -0.8420 5.6873 15 6 8.8214 -0.5280 5.5535 16 6 9.7150 0.0788 6.6044 17 7 10.4428 -0.9854 7.3002 18 6 11.3210 -0.6716 8.3030 19 1 11.4767 0.3602 8.5812 20 6 12.0110 -1.6799 8.9619 21 7 11.8216 -2.9374 8.6225 22 14 13.2083 -1.2521 10.3303 23 1 12.4897 -1.2354 11.6298 24 1 14.2909 -2.2676 10.3764 25 1 13.7964 0.0870 10.0728 26 7 9.1662 -0.8612 4.3048 27 7 8.1395 -1.3543 3.7068 28 6 2.0401 -0.7212 1.2492 29 1 1.6766 -0.2073 2.1392 30 6 1.5301 -2.1637 1.2493 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.9334 -1.2359 -2.1386 37 1 3.9338 0.3059 -1.2487 38 1 5.1696 -1.4439 0.0003 39 1 3.7159 -2.4708 0.0002 40 1 3.5003 -2.0759 2.8837 41 1 5.1079 -1.6410 5.0023 42 1 5.8169 -2.9123 3.9779 43 1 6.8993 -0.7092 6.5671 44 1 10.4261 0.7552 6.1301 45 1 9.1088 0.6329 7.3210 46 1 10.3032 -1.9121 7.0500 47 1 12.3040 -3.6419 9.0827 48 1 1.8931 -2.6774 2.1395 49 1 0.4401 -2.1637 1.2493 50 1 1.8935 -2.6775 0.3593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603166853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:29 Heat of formation + Delta-G solvation = 63.682272 kcal Electronic energy + Delta-G solvation = -28604.174222 eV Core-core repulsion = 24668.607804 eV Total energy + Delta-G solvation = -3935.566418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.88153 -40.83651 -39.12987 -35.18662 -34.92112 -34.05119 -33.07802 -31.77388 -31.23668 -29.84231 -28.82199 -27.49683 -26.23694 -25.70244 -23.12197 -22.75515 -22.31763 -21.52208 -20.93423 -20.39193 -19.04670 -17.85741 -17.48217 -16.99427 -16.31284 -16.13523 -15.73052 -15.45201 -15.11614 -14.74195 -14.57283 -14.45352 -14.13966 -14.00489 -13.69639 -13.44324 -13.13827 -13.07834 -12.88669 -12.75437 -12.51893 -12.48909 -12.08606 -11.91334 -11.83232 -11.65726 -11.20721 -11.16190 -10.95641 -10.83826 -10.75754 -10.66006 -10.60921 -10.43485 -10.32855 -10.03902 -9.76489 -9.59205 -9.45726 -8.82900 -8.72443 -6.86003 -5.69088 -2.98300 1.84008 2.17792 2.25694 2.85429 3.05496 3.48972 3.54157 3.56513 4.03927 4.11251 4.15481 4.25802 4.32758 4.57716 4.61819 4.63879 4.67288 4.76669 4.80051 4.82803 4.93422 4.95746 5.09478 5.16177 5.21223 5.29418 5.35872 5.39125 5.42915 5.47897 5.55103 5.56710 5.64136 5.70051 5.70251 5.80157 5.84883 5.87844 5.90196 6.01830 6.10063 6.24160 6.49660 6.74257 6.75406 6.86415 7.02944 7.76111 7.78648 8.48363 8.96830 9.60054 10.16474 10.52788 11.53793 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.037929 B = 0.001747 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.034910 B =16020.925702 C =16179.084146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.153 3.847 8 H 0.088 0.912 9 N -0.726 5.726 10 C 0.502 3.498 11 O -0.501 6.501 12 C 0.101 3.899 13 N -0.293 5.293 14 C -0.047 4.047 15 C -0.003 4.003 16 C 0.233 3.767 17 N -0.726 5.726 18 C -0.238 4.238 19 H 0.073 0.927 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 N -0.254 5.254 27 N -0.068 5.068 28 C -0.093 4.093 29 H 0.076 0.924 30 C -0.156 4.156 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.189 0.811 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.886 1.650 -17.951 35.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.171 4.171 7 C 0.049 3.951 8 H 0.106 0.894 9 N -0.380 5.380 10 C 0.285 3.715 11 O -0.373 6.373 12 C -0.026 4.026 13 N -0.088 5.088 14 C -0.197 4.197 15 C -0.140 4.140 16 C 0.104 3.896 17 N -0.371 5.371 18 C -0.369 4.369 19 H 0.091 0.909 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.741 3.259 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 N -0.122 5.122 27 N -0.047 5.047 28 C -0.112 4.112 29 H 0.095 0.905 30 C -0.213 4.213 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.206 0.794 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.219 0.781 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -29.746 2.022 -19.640 35.702 hybrid contribution -0.257 -0.380 2.000 2.052 sum -30.003 1.642 -17.639 34.843 Atomic orbital electron populations 1.21881 0.94862 1.02056 1.01797 1.21094 0.95694 0.99526 0.94021 0.90917 1.21678 0.95558 1.00944 0.97340 1.21483 0.95376 1.01148 0.97528 1.21963 1.01588 0.99673 0.93862 1.20971 0.93107 0.97304 0.83715 0.89361 1.46008 1.17368 1.44269 1.30331 1.20405 0.81982 0.83520 0.85599 1.90855 1.55009 1.32208 1.59233 1.21705 0.80954 1.01065 0.98827 1.46627 1.09494 1.42789 1.09861 1.23351 0.98252 1.06728 0.91345 1.22432 0.93120 1.03911 0.94519 1.18946 0.91267 0.91232 0.88179 1.42313 1.49543 1.04303 1.40893 1.19249 1.15741 0.92900 1.09017 0.90882 1.24756 1.00688 0.95254 1.00330 1.69682 1.45800 0.98417 1.44230 0.86150 0.80672 0.77207 0.81917 1.21799 1.21830 1.20682 1.75123 1.18571 1.12495 1.06041 1.78355 0.89742 1.18413 1.18229 1.21375 0.93533 0.97281 0.98962 0.90545 1.22036 1.01544 0.95685 1.02032 0.92651 0.92580 0.92253 0.91514 0.91854 0.91581 0.91709 0.91164 0.91400 0.76450 0.84966 0.85640 0.79399 0.94285 0.94481 0.78104 0.93574 0.92939 0.91880 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.84 37.16 0.33 -0.23 16 2 C -0.08 -0.39 2.50 -90.62 -0.23 -0.61 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.55 4.93 -26.73 -0.13 -0.69 16 5 C -0.12 -0.72 5.92 -26.74 -0.16 -0.88 16 6 C -0.13 -0.95 5.22 -26.73 -0.14 -1.09 16 7 C 0.15 1.05 2.14 -67.96 -0.15 0.90 16 8 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 9 N -0.73 -4.64 5.00 -53.83 -0.27 -4.91 16 10 C 0.50 5.17 7.81 -10.98 -0.09 5.08 16 11 O -0.50 -7.91 15.35 5.56 0.09 -7.83 16 12 C 0.10 0.88 6.94 -5.19 -0.04 0.85 16 13 N -0.29 -4.47 3.19 -62.44 -0.20 -4.67 16 14 C -0.05 -0.76 11.50 -17.04 -0.20 -0.95 16 15 C 0.00 -0.06 6.62 -82.78 -0.55 -0.60 16 16 C 0.23 5.14 6.82 -5.19 -0.04 5.10 16 17 N -0.73 -19.53 5.59 -61.08 -0.34 -19.87 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 22 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 N -0.25 -5.66 12.41 33.29 0.41 -5.25 16 27 N -0.07 -1.34 12.14 60.35 0.73 -0.61 16 28 C -0.09 -0.42 2.41 -90.65 -0.22 -0.64 16 29 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 30 C -0.16 -0.53 7.97 37.16 0.30 -0.23 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.20 6.43 -51.93 -0.33 -0.13 16 34 H 0.07 0.29 6.43 -51.93 -0.33 -0.04 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 40 H 0.40 1.28 6.86 -40.82 -0.28 1.00 16 41 H 0.13 0.59 8.07 -51.93 -0.42 0.17 16 42 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.19 2.22 8.06 -52.48 -0.42 1.80 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.39 11.13 7.66 -40.82 -0.31 10.82 16 47 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.05 0.13 6.50 -51.93 -0.34 -0.21 16 49 H 0.06 0.19 6.43 -51.93 -0.33 -0.14 16 50 H 0.07 0.25 4.81 -51.93 -0.25 0.01 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -38.66 393.67 -7.43 -46.09 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.95 Total: 3.20 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.54 Total: -1.53 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 1.06 Total: -63.70 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.66 -7.43 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603166853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.773 kcal (2) G-P(sol) polarization free energy of solvation -38.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds