Wall clock time and date at job start Tue Mar 31 2020 23:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46612 * 2 1 4 4 C 1.53003 * 109.47353 * 240.00213 * 2 1 3 5 5 C 1.52997 * 109.47067 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47602 * 59.99435 * 5 4 2 7 7 C 1.53003 * 109.47371 * 300.00379 * 6 5 4 8 8 H 1.08996 * 109.46576 * 299.99685 * 7 6 5 9 9 N 1.46497 * 109.47218 * 179.97438 * 7 6 5 10 10 C 1.34780 * 119.99566 * 85.00262 * 9 7 6 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.35317 * 125.86734 * 124.99716 * 13 12 10 15 15 C 1.35351 * 106.17555 * 179.97438 * 14 13 12 16 16 C 1.50703 * 126.74773 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.46915 * 95.00283 * 16 15 14 18 18 C 1.36940 * 119.99762 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99944 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00139 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47631 * 89.99821 * 22 20 18 24 24 H 1.48502 * 109.47257 * 209.99980 * 22 20 18 25 25 H 1.48502 * 109.46968 * 329.99814 * 22 20 18 26 26 N 1.33764 * 106.49572 * 0.02562 * 15 14 13 27 27 N 1.28638 * 108.88917 * 359.73267 * 26 15 14 28 28 C 1.52997 * 109.47253 * 119.99919 * 2 1 3 29 29 H 1.09007 * 109.46591 * 300.00275 * 28 2 1 30 30 C 1.52999 * 109.47392 * 59.99998 * 28 2 1 31 31 H 1.08995 * 109.47539 * 300.00010 * 1 2 3 32 32 H 1.09004 * 109.47207 * 60.00257 * 1 2 3 33 33 H 1.09005 * 109.46612 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46570 * 299.99591 * 4 2 1 35 35 H 1.09001 * 109.46896 * 59.99401 * 4 2 1 36 36 H 1.08997 * 109.46782 * 179.97438 * 5 4 2 37 37 H 1.09006 * 109.47022 * 299.99229 * 5 4 2 38 38 H 1.08998 * 109.47271 * 179.97438 * 6 5 4 39 39 H 1.09006 * 109.47100 * 59.99841 * 6 5 4 40 40 H 0.96995 * 120.00423 * 264.99567 * 9 7 6 41 41 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 42 42 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 43 43 H 1.08003 * 126.91145 * 0.02927 * 14 13 12 44 44 H 1.09001 * 109.46704 * 214.99685 * 16 15 14 45 45 H 1.08998 * 109.47102 * 335.00277 * 16 15 14 46 46 H 0.97003 * 120.00185 * 0.02562 * 17 16 15 47 47 H 0.96992 * 120.00353 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.47523 * 180.02562 * 30 28 2 49 49 H 1.09006 * 109.47052 * 300.00515 * 30 28 2 50 50 H 1.09006 * 109.46598 * 59.99902 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5701 -0.7217 -1.2489 6 6 4.0796 -1.4432 0.0003 7 6 3.5695 -0.7220 1.2496 8 1 3.9332 0.3055 1.2497 9 7 4.0570 -1.4132 2.4457 10 6 5.2789 -1.1282 2.9378 11 8 5.9752 -0.2998 2.3901 12 6 5.7806 -1.8396 4.1679 13 7 7.1239 -1.3568 4.4975 14 6 7.5116 -0.8420 5.6873 15 6 8.8214 -0.5280 5.5535 16 6 9.7150 0.0788 6.6044 17 7 10.4428 -0.9854 7.3002 18 6 11.3210 -0.6716 8.3030 19 1 11.4767 0.3602 8.5812 20 6 12.0110 -1.6799 8.9619 21 7 11.8216 -2.9374 8.6225 22 14 13.2083 -1.2521 10.3303 23 1 12.4897 -1.2354 11.6298 24 1 14.2909 -2.2676 10.3764 25 1 13.7964 0.0870 10.0728 26 7 9.1662 -0.8612 4.3048 27 7 8.1395 -1.3543 3.7068 28 6 2.0401 -0.7212 1.2492 29 1 1.6766 -0.2073 2.1392 30 6 1.5301 -2.1637 1.2493 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.9334 -1.2359 -2.1386 37 1 3.9338 0.3059 -1.2487 38 1 5.1696 -1.4439 0.0003 39 1 3.7159 -2.4708 0.0002 40 1 3.5003 -2.0759 2.8837 41 1 5.1079 -1.6410 5.0023 42 1 5.8169 -2.9123 3.9779 43 1 6.8993 -0.7092 6.5671 44 1 10.4261 0.7552 6.1301 45 1 9.1088 0.6329 7.3210 46 1 10.3032 -1.9121 7.0500 47 1 12.3040 -3.6419 9.0827 48 1 1.8931 -2.6774 2.1395 49 1 0.4401 -2.1637 1.2493 50 1 1.8935 -2.6775 0.3593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603166853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:28 Heat of formation + Delta-G solvation = 34.921785 kcal Electronic energy + Delta-G solvation = -28605.421370 eV Core-core repulsion = 24668.607804 eV Total energy + Delta-G solvation = -3936.813566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.22031 -41.47562 -39.83002 -36.87697 -35.68009 -35.45110 -33.65190 -33.54563 -31.84106 -31.57038 -29.64711 -28.05267 -27.53702 -26.62776 -24.77281 -23.92813 -22.92507 -22.61680 -22.02153 -21.32104 -19.62798 -19.28724 -18.56263 -18.35578 -17.19738 -16.96051 -16.56781 -16.34757 -16.28684 -15.84222 -15.69084 -15.51064 -15.20807 -15.08121 -14.76579 -14.57573 -14.30126 -14.00204 -13.78554 -13.48421 -13.38181 -13.22276 -13.01877 -12.78882 -12.75628 -12.54445 -12.47172 -12.31297 -12.16914 -12.07948 -11.87966 -11.81894 -11.62771 -11.54679 -11.28119 -11.17255 -11.04471 -10.94715 -10.73345 -10.16397 -10.13010 -9.00612 -7.91833 -5.22297 0.61726 1.27083 1.41206 1.48920 1.53516 1.54896 1.62734 2.08431 2.60885 3.31370 3.40949 3.55340 3.63838 3.68581 3.76171 3.86693 4.02237 4.03651 4.09907 4.15846 4.22155 4.28293 4.33457 4.36994 4.43670 4.55006 4.58305 4.70406 4.73152 4.81656 4.87113 4.93609 5.00505 5.03077 5.10954 5.12644 5.16396 5.19174 5.21050 5.28065 5.34623 5.41799 5.45993 5.48475 5.52199 5.62490 5.67484 6.27776 6.40817 7.11061 7.34617 7.55904 8.05626 8.32634 9.32117 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.037929 B = 0.001747 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.034910 B =16020.925702 C =16179.084146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.059 0.941 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.154 3.846 8 H 0.057 0.943 9 N -0.702 5.702 10 C 0.501 3.499 11 O -0.566 6.566 12 C 0.089 3.911 13 N -0.279 5.279 14 C -0.017 4.017 15 C -0.041 4.041 16 C 0.237 3.763 17 N -0.738 5.738 18 C -0.245 4.245 19 H 0.084 0.916 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.981 3.019 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.269 1.269 26 N -0.306 5.306 27 N -0.096 5.096 28 C -0.083 4.083 29 H 0.081 0.919 30 C -0.156 4.156 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.083 0.917 40 H 0.420 0.580 41 H 0.189 0.811 42 H 0.158 0.842 43 H 0.238 0.762 44 H 0.024 0.976 45 H 0.065 0.935 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.137 1.115 -16.629 37.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.077 0.923 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.166 4.166 7 C 0.049 3.951 8 H 0.075 0.925 9 N -0.356 5.356 10 C 0.285 3.715 11 O -0.443 6.443 12 C -0.034 4.034 13 N -0.074 5.074 14 C -0.168 4.168 15 C -0.180 4.180 16 C 0.109 3.891 17 N -0.381 5.381 18 C -0.376 4.376 19 H 0.101 0.899 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.809 3.191 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.194 1.194 26 N -0.173 5.173 27 N -0.075 5.075 28 C -0.102 4.102 29 H 0.100 0.900 30 C -0.213 4.213 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.260 0.740 41 H 0.206 0.794 42 H 0.175 0.825 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -33.081 1.489 -18.349 37.858 hybrid contribution 0.600 -0.187 1.484 1.612 sum -32.481 1.302 -16.865 36.621 Atomic orbital electron populations 1.21846 0.93703 1.02688 1.01953 1.21098 0.96558 0.98808 0.94002 0.92270 1.21642 0.93920 1.01696 0.97679 1.21479 0.96846 1.00085 0.97144 1.21900 0.99283 1.00777 0.94636 1.20936 0.94861 0.95614 0.83645 0.92507 1.45832 1.16307 1.43792 1.29698 1.20731 0.82313 0.82692 0.85721 1.90851 1.56939 1.35277 1.61233 1.22419 0.78566 1.02329 1.00112 1.47027 1.10664 1.40694 1.08971 1.23911 0.96963 1.03520 0.92449 1.22334 0.95019 1.06599 0.93999 1.18949 0.91291 0.90025 0.88831 1.42502 1.49944 1.04657 1.40949 1.19711 1.15562 0.93394 1.08969 0.89850 1.25650 1.02935 0.95161 1.03217 1.69857 1.47207 0.99423 1.45810 0.85035 0.78034 0.77058 0.78956 1.20777 1.22521 1.19425 1.75035 1.20615 1.14289 1.07393 1.78235 0.90609 1.19481 1.19182 1.21312 0.91179 0.98565 0.99144 0.90028 1.22053 1.02238 0.94350 1.02615 0.92465 0.92542 0.91321 0.90390 0.91435 0.91403 0.93279 0.94781 0.89805 0.74041 0.79389 0.82469 0.74596 0.95844 0.91712 0.79751 0.94063 0.91541 0.90837 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.84 71.98 0.64 -0.14 16 2 C -0.09 -0.68 2.50 -10.79 -0.03 -0.71 16 3 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 4 C -0.11 -0.93 4.93 30.59 0.15 -0.78 16 5 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 6 C -0.13 -1.86 5.22 30.59 0.16 -1.70 16 7 C 0.15 2.04 2.14 44.98 0.10 2.14 16 8 H 0.06 1.15 7.58 -2.39 -0.02 1.13 16 9 N -0.70 -7.61 5.00 -442.62 -2.21 -9.82 16 10 C 0.50 9.65 7.81 87.66 0.68 10.34 16 11 O -0.57 -18.44 15.35 -3.03 -0.05 -18.48 16 12 C 0.09 1.25 6.94 85.63 0.59 1.84 16 13 N -0.28 -8.01 3.19 -351.46 -1.12 -9.13 16 14 C -0.02 -0.52 11.50 83.49 0.96 0.44 16 15 C -0.04 -1.69 6.62 41.60 0.28 -1.41 16 16 C 0.24 10.47 6.82 85.63 0.58 11.06 16 17 N -0.74 -40.06 5.59 -347.17 -1.94 -42.00 16 18 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 21 N -0.97 -61.56 13.06 21.65 0.28 -61.27 16 22 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 N -0.31 -14.06 12.41 -48.60 -0.60 -14.67 16 27 N -0.10 -3.84 12.14 37.02 0.45 -3.39 16 28 C -0.08 -0.60 2.41 -10.81 -0.03 -0.62 16 29 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 30 C -0.16 -0.54 7.97 71.98 0.57 0.03 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.07 0.26 6.43 -2.38 -0.02 0.24 16 34 H 0.08 0.50 6.43 -2.38 -0.02 0.49 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.94 6.43 -2.38 -0.02 0.92 16 40 H 0.42 1.13 6.86 -92.71 -0.64 0.49 16 41 H 0.19 0.54 8.07 -2.39 -0.02 0.52 16 42 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.24 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.37 21.91 7.66 -92.71 -0.71 21.20 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.07 0.05 6.50 -2.39 -0.02 0.04 16 49 H 0.07 0.16 6.43 -2.38 -0.02 0.15 16 50 H 0.06 0.29 4.81 -2.38 -0.01 0.28 16 Total: -1.00 -89.89 393.67 2.60 -87.29 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.38 Total: 20.63 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.15 Total: 1.78 kcal Atomic # 7 Polarization: -135.14 SS G_CDS: -5.15 Total: -140.28 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -89.89 2.60 -87.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603166853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.211 kcal (2) G-P(sol) polarization free energy of solvation -89.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds