Wall clock time and date at job start Wed Apr 1 2020 00:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46492 * 2 1 4 4 C 1.50699 * 109.47190 * 239.99736 * 2 1 3 5 5 O 1.21278 * 120.00116 * 333.18106 * 4 2 1 6 6 N 1.34775 * 119.99536 * 153.17488 * 4 2 1 7 7 C 1.46925 * 120.63322 * 5.15321 * 6 4 2 8 8 C 1.53622 * 108.54310 * 126.36900 * 7 6 4 9 9 H 1.08993 * 109.63403 * 294.86506 * 8 7 6 10 10 C 1.53002 * 109.43318 * 174.72269 * 8 7 6 11 11 C 1.53044 * 109.24326 * 54.85595 * 8 7 6 12 12 C 1.53040 * 109.53846 * 298.51120 * 11 8 7 13 13 H 1.08996 * 109.50147 * 181.31430 * 12 11 8 14 14 C 1.52996 * 109.52329 * 301.39976 * 12 11 8 15 15 C 1.46931 * 120.62804 * 185.43195 * 6 4 2 16 16 N 1.46498 * 109.47032 * 119.99425 * 2 1 3 17 17 C 1.35320 * 125.86632 * 35.00673 * 16 2 1 18 18 C 1.35352 * 106.17446 * 179.97438 * 17 16 2 19 19 C 1.50697 * 126.75118 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47414 * 95.00007 * 19 18 17 21 21 C 1.36934 * 119.99949 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00122 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99847 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99843 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99712 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47517 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.47077 * 120.00212 * 25 23 21 28 28 H 1.48498 * 109.47126 * 239.99917 * 25 23 21 29 29 N 1.33772 * 106.49495 * 359.97438 * 18 17 16 30 30 N 1.28641 * 108.89004 * 359.74060 * 29 18 17 31 31 H 1.09005 * 109.47261 * 55.07471 * 1 2 3 32 32 H 1.08998 * 109.47724 * 295.07025 * 1 2 3 33 33 H 1.08999 * 109.47033 * 175.06872 * 1 2 3 34 34 H 1.08999 * 109.58555 * 246.19763 * 7 6 4 35 35 H 1.08998 * 109.58657 * 6.62438 * 7 6 4 36 36 H 1.09000 * 109.46890 * 300.29163 * 10 8 7 37 37 H 1.09004 * 109.46496 * 60.28641 * 10 8 7 38 38 H 1.08997 * 109.47375 * 180.28499 * 10 8 7 39 39 H 1.08998 * 109.45920 * 178.48779 * 11 8 7 40 40 H 1.08999 * 109.44956 * 58.52458 * 11 8 7 41 41 H 1.09009 * 109.47082 * 179.85389 * 14 12 11 42 42 H 1.09005 * 109.47313 * 299.84876 * 14 12 11 43 43 H 1.08995 * 109.47584 * 59.85056 * 14 12 11 44 44 H 1.08996 * 109.58396 * 353.37648 * 15 6 4 45 45 H 1.09003 * 109.58537 * 113.65541 * 15 6 4 46 46 H 1.07991 * 126.91312 * 359.97438 * 17 16 2 47 47 H 1.09004 * 109.46511 * 215.00105 * 19 18 17 48 48 H 1.08999 * 109.46785 * 334.99412 * 19 18 17 49 49 H 0.96998 * 119.99776 * 359.97438 * 20 19 18 50 50 H 0.96998 * 119.99596 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3508 -1.5629 -1.7592 6 7 3.2390 -0.3983 -1.7432 7 6 4.1237 0.5496 -1.0522 8 6 5.4916 -0.1190 -0.8477 9 1 5.3871 -0.9678 -0.1720 10 6 6.4689 0.8943 -0.2484 11 6 6.0231 -0.6038 -2.1985 12 6 5.0627 -1.6419 -2.7836 13 1 5.4536 -2.0039 -3.7345 14 6 4.9214 -2.8137 -1.8101 15 6 3.6923 -0.9949 -3.0072 16 7 2.0183 -0.6905 1.1962 17 6 1.4357 -1.7587 1.7884 18 6 2.2130 -2.0708 2.8516 19 6 1.9882 -3.1901 3.8353 20 7 2.7583 -4.3657 3.4219 21 6 2.7105 -5.5127 4.1684 22 1 2.1054 -5.5505 5.0621 23 6 3.4400 -6.6269 3.7763 24 7 4.1778 -6.5806 2.6874 25 14 3.3753 -8.1912 4.7950 26 1 2.4803 -7.9855 5.9620 27 1 2.8529 -9.3036 3.9613 28 1 4.7408 -8.5286 5.2713 29 7 3.2201 -1.1903 2.8574 30 7 3.0790 -0.3896 1.8605 31 1 -0.3634 0.5884 -0.8426 32 1 -0.3634 0.4354 0.9308 33 1 -0.3633 -1.0239 -0.0883 34 1 4.2402 1.4485 -1.6575 35 1 3.6948 0.8109 -0.0848 36 1 6.5717 1.7434 -0.9241 37 1 6.0899 1.2393 0.7137 38 1 7.4411 0.4221 -0.1077 39 1 7.0058 -1.0549 -2.0613 40 1 6.1038 0.2418 -2.8815 41 1 4.2353 -3.5513 -2.2266 42 1 5.8968 -3.2738 -1.6513 43 1 4.5316 -2.4511 -0.8590 44 1 2.9786 -1.7528 -3.3301 45 1 3.7718 -0.2196 -3.7693 46 1 0.5324 -2.2610 1.4757 47 1 2.3127 -2.8732 4.8265 48 1 0.9280 -3.4416 3.8633 49 1 3.3021 -4.3316 2.6194 50 1 4.6878 -7.3590 2.4137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603176557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:57 Heat of formation + Delta-G solvation = 75.332887 kcal Electronic energy + Delta-G solvation = -30872.982166 eV Core-core repulsion = 26937.920957 eV Total energy + Delta-G solvation = -3935.061209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -43.10182 -40.71972 -38.38592 -35.65007 -34.57801 -33.89137 -33.38102 -31.95764 -30.61863 -29.91889 -27.47965 -26.83658 -26.31055 -25.84919 -24.54596 -22.79714 -22.32648 -21.51328 -20.85986 -19.91717 -18.82282 -17.97206 -17.48161 -16.85183 -16.52622 -15.55555 -15.36880 -15.10214 -14.72683 -14.56544 -14.28228 -14.19876 -14.08591 -13.76948 -13.37066 -13.35652 -13.08734 -13.00491 -12.73586 -12.59462 -12.41520 -12.21750 -12.05828 -11.83490 -11.67545 -11.61032 -11.27593 -11.18487 -11.04476 -10.86741 -10.80068 -10.64958 -10.62859 -10.45406 -10.31233 -10.02196 -9.75500 -9.59854 -8.89348 -8.86033 -8.81852 -6.87825 -5.70314 -2.99775 1.58288 1.87944 2.61309 2.79538 2.91615 3.48025 3.53304 3.55805 3.93448 4.03858 4.36297 4.49237 4.59585 4.62046 4.65319 4.73666 4.75798 4.94939 5.11683 5.15220 5.19082 5.25237 5.32253 5.39937 5.44384 5.47560 5.47997 5.51082 5.56479 5.65510 5.65907 5.67956 5.78107 5.82780 5.92253 5.99523 6.05094 6.10341 6.17324 6.20937 6.27908 6.41366 6.46088 6.67702 6.71091 6.79531 7.00932 7.73668 7.75026 8.46606 8.79796 9.58598 10.14470 10.50358 11.52471 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003670 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.225612 B = 7626.821619 C = 8498.694821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.127 0.873 4 C 0.509 3.491 5 O -0.517 6.517 6 N -0.598 5.598 7 C 0.104 3.896 8 C -0.106 4.106 9 H 0.085 0.915 10 C -0.143 4.143 11 C -0.110 4.110 12 C -0.106 4.106 13 H 0.082 0.918 14 C -0.145 4.145 15 C 0.114 3.886 16 N -0.296 5.296 17 C -0.028 4.028 18 C -0.005 4.005 19 C 0.233 3.767 20 N -0.725 5.725 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.279 1.279 27 H -0.292 1.292 28 H -0.292 1.292 29 N -0.245 5.245 30 N -0.097 5.097 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.188 0.812 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 20.165 -13.229 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.144 0.856 4 C 0.293 3.707 5 O -0.391 6.391 6 N -0.331 5.331 7 C -0.019 4.019 8 C -0.125 4.125 9 H 0.104 0.896 10 C -0.201 4.201 11 C -0.147 4.147 12 C -0.125 4.125 13 H 0.100 0.900 14 C -0.203 4.203 15 C -0.008 4.008 16 N -0.091 5.091 17 C -0.179 4.179 18 C -0.142 4.142 19 C 0.104 3.896 20 N -0.370 5.370 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 N -0.113 5.113 30 N -0.076 5.076 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.205 0.795 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.624 20.550 -13.297 24.530 hybrid contribution -0.582 -1.535 -0.037 1.642 sum -2.206 19.015 -13.335 23.329 Atomic orbital electron populations 1.22054 0.89481 1.05595 1.04103 1.21660 0.97942 0.97688 0.80343 0.85570 1.20426 0.81710 0.83262 0.85333 1.90745 1.56343 1.30699 1.61277 1.48066 1.16007 1.44825 1.24153 1.22138 0.90744 0.91155 0.97835 1.21557 0.93792 0.99532 0.97621 0.89649 1.21739 0.99052 0.98328 1.00986 1.21640 0.98793 0.98167 0.96136 1.21503 0.94739 0.96285 0.99964 0.90006 1.21812 1.02014 0.96999 0.99427 1.21738 0.96470 0.98136 0.84413 1.47059 1.18602 1.22807 1.20657 1.23372 1.03986 0.93141 0.97357 1.22441 0.93059 0.99671 0.99038 1.18946 0.95620 0.82744 0.92304 1.42301 1.55241 1.08550 1.30908 1.19272 1.23115 0.89470 1.05110 0.90846 1.24747 0.99858 0.98289 0.97963 1.69697 1.33534 1.29755 1.24958 0.86103 0.77199 0.83542 0.79260 1.20455 1.21938 1.21889 1.75072 1.20670 1.03395 1.12165 1.78171 1.03751 1.22342 1.03295 0.89390 0.90187 0.89551 0.91108 0.88772 0.92893 0.91828 0.92201 0.91352 0.91935 0.92595 0.92364 0.92364 0.88812 0.91287 0.79504 0.94301 0.94484 0.78134 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.38 37.16 0.31 -0.99 16 2 C 0.13 1.38 2.73 -69.08 -0.19 1.19 16 3 H 0.13 1.01 6.65 -51.93 -0.35 0.67 16 4 C 0.51 6.46 7.11 -10.99 -0.08 6.38 16 5 O -0.52 -8.13 15.43 5.56 0.09 -8.05 16 6 N -0.60 -6.59 2.41 -172.50 -0.42 -7.00 16 7 C 0.10 0.98 5.46 -3.49 -0.02 0.96 16 8 C -0.11 -1.11 2.54 -90.27 -0.23 -1.34 16 9 H 0.09 1.21 6.33 -51.93 -0.33 0.88 16 10 C -0.14 -1.29 9.20 37.16 0.34 -0.95 16 11 C -0.11 -1.01 4.71 -26.69 -0.13 -1.14 16 12 C -0.11 -1.08 3.21 -90.50 -0.29 -1.37 16 13 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 14 C -0.15 -2.02 8.71 37.16 0.32 -1.70 16 15 C 0.11 1.17 5.83 -3.71 -0.02 1.15 16 16 N -0.30 -4.21 3.24 -55.89 -0.18 -4.39 16 17 C -0.03 -0.46 10.63 -17.04 -0.18 -0.64 16 18 C 0.00 -0.09 6.62 -82.78 -0.55 -0.64 16 19 C 0.23 4.99 6.82 -5.20 -0.04 4.95 16 20 N -0.73 -19.34 5.59 -61.09 -0.34 -19.68 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -29.10 13.06 55.49 0.72 -28.37 16 25 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 N -0.25 -4.83 12.41 33.29 0.41 -4.41 16 30 N -0.10 -1.60 11.83 60.35 0.71 -0.88 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.85 6.97 -51.93 -0.36 0.49 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.95 4.40 -51.93 -0.23 0.72 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.97 5.97 -51.93 -0.31 0.66 16 44 H 0.09 1.12 7.00 -51.93 -0.36 0.75 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.19 2.60 7.44 -52.49 -0.39 2.21 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.39 11.14 7.66 -40.82 -0.31 10.82 16 50 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -34.74 394.83 -7.17 -41.91 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.11 Total: 8.69 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.99 Total: -1.58 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: 0.91 Total: -64.74 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.74 -7.17 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.239 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds