Wall clock time and date at job start Wed Apr 1 2020 00:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46492 * 2 1 4 4 C 1.50699 * 109.47190 * 239.99736 * 2 1 3 5 5 O 1.21278 * 120.00116 * 333.18106 * 4 2 1 6 6 N 1.34775 * 119.99536 * 153.17488 * 4 2 1 7 7 C 1.46925 * 120.63322 * 5.15321 * 6 4 2 8 8 C 1.53622 * 108.54310 * 126.36900 * 7 6 4 9 9 H 1.08993 * 109.63403 * 294.86506 * 8 7 6 10 10 C 1.53002 * 109.43318 * 174.72269 * 8 7 6 11 11 C 1.53044 * 109.24326 * 54.85595 * 8 7 6 12 12 C 1.53040 * 109.53846 * 298.51120 * 11 8 7 13 13 H 1.08996 * 109.50147 * 181.31430 * 12 11 8 14 14 C 1.52996 * 109.52329 * 301.39976 * 12 11 8 15 15 C 1.46931 * 120.62804 * 185.43195 * 6 4 2 16 16 N 1.46498 * 109.47032 * 119.99425 * 2 1 3 17 17 C 1.35320 * 125.86632 * 35.00673 * 16 2 1 18 18 C 1.35352 * 106.17446 * 179.97438 * 17 16 2 19 19 C 1.50697 * 126.75118 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47414 * 95.00007 * 19 18 17 21 21 C 1.36934 * 119.99949 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00122 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99847 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99843 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99712 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47517 * 0.02562 * 25 23 21 27 27 H 1.48509 * 109.47077 * 120.00212 * 25 23 21 28 28 H 1.48498 * 109.47126 * 239.99917 * 25 23 21 29 29 N 1.33772 * 106.49495 * 359.97438 * 18 17 16 30 30 N 1.28641 * 108.89004 * 359.74060 * 29 18 17 31 31 H 1.09005 * 109.47261 * 55.07471 * 1 2 3 32 32 H 1.08998 * 109.47724 * 295.07025 * 1 2 3 33 33 H 1.08999 * 109.47033 * 175.06872 * 1 2 3 34 34 H 1.08999 * 109.58555 * 246.19763 * 7 6 4 35 35 H 1.08998 * 109.58657 * 6.62438 * 7 6 4 36 36 H 1.09000 * 109.46890 * 300.29163 * 10 8 7 37 37 H 1.09004 * 109.46496 * 60.28641 * 10 8 7 38 38 H 1.08997 * 109.47375 * 180.28499 * 10 8 7 39 39 H 1.08998 * 109.45920 * 178.48779 * 11 8 7 40 40 H 1.08999 * 109.44956 * 58.52458 * 11 8 7 41 41 H 1.09009 * 109.47082 * 179.85389 * 14 12 11 42 42 H 1.09005 * 109.47313 * 299.84876 * 14 12 11 43 43 H 1.08995 * 109.47584 * 59.85056 * 14 12 11 44 44 H 1.08996 * 109.58396 * 353.37648 * 15 6 4 45 45 H 1.09003 * 109.58537 * 113.65541 * 15 6 4 46 46 H 1.07991 * 126.91312 * 359.97438 * 17 16 2 47 47 H 1.09004 * 109.46511 * 215.00105 * 19 18 17 48 48 H 1.08999 * 109.46785 * 334.99412 * 19 18 17 49 49 H 0.96998 * 119.99776 * 359.97438 * 20 19 18 50 50 H 0.96998 * 119.99596 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3508 -1.5629 -1.7592 6 7 3.2390 -0.3983 -1.7432 7 6 4.1237 0.5496 -1.0522 8 6 5.4916 -0.1190 -0.8477 9 1 5.3871 -0.9678 -0.1720 10 6 6.4689 0.8943 -0.2484 11 6 6.0231 -0.6038 -2.1985 12 6 5.0627 -1.6419 -2.7836 13 1 5.4536 -2.0039 -3.7345 14 6 4.9214 -2.8137 -1.8101 15 6 3.6923 -0.9949 -3.0072 16 7 2.0183 -0.6905 1.1962 17 6 1.4357 -1.7587 1.7884 18 6 2.2130 -2.0708 2.8516 19 6 1.9882 -3.1901 3.8353 20 7 2.7583 -4.3657 3.4219 21 6 2.7105 -5.5127 4.1684 22 1 2.1054 -5.5505 5.0621 23 6 3.4400 -6.6269 3.7763 24 7 4.1778 -6.5806 2.6874 25 14 3.3753 -8.1912 4.7950 26 1 2.4803 -7.9855 5.9620 27 1 2.8529 -9.3036 3.9613 28 1 4.7408 -8.5286 5.2713 29 7 3.2201 -1.1903 2.8574 30 7 3.0790 -0.3896 1.8605 31 1 -0.3634 0.5884 -0.8426 32 1 -0.3634 0.4354 0.9308 33 1 -0.3633 -1.0239 -0.0883 34 1 4.2402 1.4485 -1.6575 35 1 3.6948 0.8109 -0.0848 36 1 6.5717 1.7434 -0.9241 37 1 6.0899 1.2393 0.7137 38 1 7.4411 0.4221 -0.1077 39 1 7.0058 -1.0549 -2.0613 40 1 6.1038 0.2418 -2.8815 41 1 4.2353 -3.5513 -2.2266 42 1 5.8968 -3.2738 -1.6513 43 1 4.5316 -2.4511 -0.8590 44 1 2.9786 -1.7528 -3.3301 45 1 3.7718 -0.2196 -3.7693 46 1 0.5324 -2.2610 1.4757 47 1 2.3127 -2.8732 4.8265 48 1 0.9280 -3.4416 3.8633 49 1 3.3021 -4.3316 2.6194 50 1 4.6878 -7.3590 2.4137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603176557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:54 Heat of formation + Delta-G solvation = 51.975538 kcal Electronic energy + Delta-G solvation = -30873.995017 eV Core-core repulsion = 26937.920957 eV Total energy + Delta-G solvation = -3936.074060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -44.40948 -41.66200 -39.31700 -37.07483 -36.21699 -34.79775 -34.26304 -33.79884 -31.79975 -31.62581 -28.46692 -27.74245 -27.64493 -27.05468 -25.57211 -24.76735 -23.43519 -22.48616 -22.24946 -20.93356 -19.77052 -19.35373 -18.90703 -18.20170 -17.59061 -16.83158 -16.44706 -16.35318 -16.02326 -15.95117 -15.57999 -15.19825 -15.15352 -15.05153 -14.94219 -14.48590 -14.40467 -14.00137 -13.84315 -13.73244 -13.36813 -13.21132 -13.11721 -13.01525 -12.82292 -12.76647 -12.70443 -12.58165 -12.41680 -12.07778 -12.06259 -11.98879 -11.91321 -11.83682 -11.67535 -11.49066 -11.24092 -10.99641 -10.72933 -10.24977 -9.76941 -9.04544 -7.95052 -5.25948 0.38354 0.74886 1.40174 1.48712 1.49530 1.60100 1.75310 1.77869 2.57768 3.04958 3.15842 3.35907 3.44979 3.58141 3.71236 3.76310 3.80307 3.88617 3.93463 4.11884 4.12903 4.19640 4.32168 4.38951 4.39977 4.54757 4.55004 4.56280 4.61638 4.65246 4.69319 4.74152 4.81324 4.82775 4.98521 5.00873 5.02957 5.04991 5.09237 5.11352 5.14967 5.25705 5.35973 5.42640 5.46719 5.49252 5.52565 6.10787 6.23914 6.79232 7.30514 7.42651 8.01224 8.27465 9.29203 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003670 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.225612 B = 7626.821619 C = 8498.694821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 H 0.160 0.840 4 C 0.500 3.500 5 O -0.555 6.555 6 N -0.595 5.595 7 C 0.103 3.897 8 C -0.106 4.106 9 H 0.036 0.964 10 C -0.138 4.138 11 C -0.104 4.104 12 C -0.099 4.099 13 H 0.105 0.895 14 C -0.141 4.141 15 C 0.112 3.888 16 N -0.281 5.281 17 C -0.017 4.017 18 C -0.031 4.031 19 C 0.235 3.765 20 N -0.739 5.739 21 C -0.243 4.243 22 H 0.086 0.914 23 C -0.077 4.077 24 N -0.974 5.974 25 Si 0.979 3.021 26 H -0.259 1.259 27 H -0.293 1.293 28 H -0.295 1.295 29 N -0.284 5.284 30 N -0.087 5.087 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.051 0.949 43 H 0.023 0.977 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.208 0.792 47 H 0.035 0.965 48 H 0.059 0.941 49 H 0.368 0.632 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 22.536 -14.337 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.177 0.823 4 C 0.285 3.715 5 O -0.432 6.432 6 N -0.326 5.326 7 C -0.018 4.018 8 C -0.125 4.125 9 H 0.055 0.945 10 C -0.196 4.196 11 C -0.142 4.142 12 C -0.118 4.118 13 H 0.123 0.877 14 C -0.198 4.198 15 C -0.009 4.009 16 N -0.077 5.077 17 C -0.169 4.169 18 C -0.168 4.168 19 C 0.107 3.893 20 N -0.382 5.382 21 C -0.374 4.374 22 H 0.104 0.896 23 C -0.269 4.269 24 N -0.625 5.625 25 Si 0.808 3.192 26 H -0.183 1.183 27 H -0.220 1.220 28 H -0.222 1.222 29 N -0.152 5.152 30 N -0.066 5.066 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.225 0.775 47 H 0.053 0.947 48 H 0.077 0.923 49 H 0.199 0.801 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.328 22.980 -14.379 27.208 hybrid contribution -0.361 -2.184 0.246 2.227 sum -2.689 20.797 -14.133 25.288 Atomic orbital electron populations 1.22112 0.87458 1.05231 1.06034 1.22138 0.99565 0.98460 0.77846 0.82274 1.20767 0.82055 0.82955 0.85699 1.90731 1.57577 1.32328 1.62548 1.48223 1.15575 1.44525 1.24300 1.22289 0.89497 0.91839 0.98215 1.21497 0.95127 0.98398 0.97511 0.94519 1.21695 0.98084 0.98731 1.01054 1.21628 0.97944 0.98756 0.95830 1.21504 0.95560 0.95022 0.99727 0.87738 1.21761 1.00812 0.98361 0.98872 1.21853 0.95455 0.98770 0.84864 1.47333 1.17410 1.22036 1.20875 1.23560 1.04008 0.93105 0.96176 1.22184 0.94377 0.99978 1.00299 1.18981 0.95778 0.81860 0.92659 1.42517 1.55656 1.09826 1.30195 1.19755 1.22312 0.90123 1.05223 0.89591 1.25654 1.00065 1.01853 0.99351 1.69882 1.35018 1.30486 1.27098 0.84988 0.77094 0.79044 0.78113 1.18343 1.22025 1.22246 1.75017 1.21673 1.04538 1.13959 1.78066 1.04160 1.21665 1.02712 0.86849 0.88626 0.91215 0.87142 0.89547 0.89937 0.92930 0.92874 0.91739 0.88579 0.94368 0.92990 0.95741 0.90977 0.87543 0.77505 0.94696 0.92302 0.80096 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.38 71.98 0.60 -1.59 16 2 C 0.12 2.42 2.73 44.25 0.12 2.54 16 3 H 0.16 2.05 6.65 -2.39 -0.02 2.03 16 4 C 0.50 12.27 7.11 87.66 0.62 12.89 16 5 O -0.55 -17.54 15.43 -3.02 -0.05 -17.59 16 6 N -0.59 -12.21 2.41 -818.07 -1.97 -14.18 16 7 C 0.10 1.71 5.46 86.51 0.47 2.18 16 8 C -0.11 -2.11 2.54 -10.57 -0.03 -2.14 16 9 H 0.04 1.10 6.33 -2.39 -0.02 1.08 16 10 C -0.14 -2.27 9.20 71.98 0.66 -1.61 16 11 C -0.10 -1.70 4.71 30.62 0.14 -1.55 16 12 C -0.10 -1.92 3.21 -10.72 -0.03 -1.95 16 13 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.14 -4.18 8.71 71.98 0.63 -3.55 16 15 C 0.11 2.10 5.83 86.36 0.50 2.60 16 16 N -0.28 -7.85 3.24 -330.74 -1.07 -8.92 16 17 C -0.02 -0.56 10.63 83.49 0.89 0.33 16 18 C -0.03 -1.22 6.62 41.60 0.28 -0.94 16 19 C 0.23 10.24 6.82 85.63 0.58 10.82 16 20 N -0.74 -40.60 5.59 -347.19 -1.94 -42.54 16 21 C -0.24 -14.09 9.99 84.04 0.84 -13.25 16 22 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 24 N -0.97 -62.98 13.06 21.65 0.28 -62.70 16 25 Si 0.98 47.63 29.55 68.60 2.03 49.65 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 N -0.28 -11.51 12.41 -48.60 -0.60 -12.11 16 30 N -0.09 -2.88 11.83 37.02 0.44 -2.44 16 31 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.29 6.97 -2.39 -0.02 1.27 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.57 4.40 -2.39 -0.01 1.56 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.02 0.87 5.97 -2.39 -0.01 0.85 16 44 H 0.07 1.70 7.00 -2.39 -0.02 1.68 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.21 5.65 7.44 -2.91 -0.02 5.63 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.37 22.35 7.66 -92.71 -0.71 21.64 16 50 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -79.85 394.83 4.10 -75.76 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.23 Total: 34.46 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.75 Total: 0.62 kcal Atomic # 7 Polarization: -138.03 SS G_CDS: -4.86 Total: -142.89 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.05 Total: -17.59 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -79.85 4.10 -75.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.731 kcal (2) G-P(sol) polarization free energy of solvation -79.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds