Wall clock time and date at job start Wed Apr 1 2020 00:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47139 * 2 1 4 4 C 1.50701 * 109.47010 * 120.00217 * 2 1 3 5 5 O 1.21285 * 119.99957 * 105.86614 * 4 2 1 6 6 N 1.34768 * 119.99977 * 285.87099 * 4 2 1 7 7 C 1.46924 * 120.63275 * 185.33347 * 6 4 2 8 8 C 1.53622 * 108.54791 * 126.36780 * 7 6 4 9 9 H 1.09002 * 109.62907 * 294.86286 * 8 7 6 10 10 C 1.53002 * 109.43310 * 174.72752 * 8 7 6 11 11 C 1.53041 * 109.24297 * 54.85382 * 8 7 6 12 12 C 1.53033 * 109.53642 * 298.51416 * 11 8 7 13 13 H 1.09002 * 109.49974 * 181.31617 * 12 11 8 14 14 C 1.53002 * 109.52852 * 301.39571 * 12 11 8 15 15 C 1.46924 * 120.63219 * 5.60748 * 6 4 2 16 16 N 1.46501 * 109.47191 * 239.99849 * 2 1 3 17 17 C 1.35317 * 125.86519 * 324.71973 * 16 2 1 18 18 C 1.35353 * 106.17246 * 179.90162 * 17 16 2 19 19 C 1.50703 * 126.75201 * 180.12597 * 18 17 16 20 20 N 1.46494 * 109.46857 * 95.24814 * 19 18 17 21 21 C 1.36943 * 119.99749 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99587 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00344 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99603 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00147 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47350 * 60.00044 * 25 23 21 27 27 H 1.48503 * 109.47161 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46958 * 299.99991 * 25 23 21 29 29 N 1.33780 * 106.49677 * 0.35349 * 18 17 16 30 30 N 1.28631 * 108.88165 * 359.77170 * 29 18 17 31 31 H 1.08997 * 109.47213 * 306.50466 * 1 2 3 32 32 H 1.09004 * 109.46919 * 66.50425 * 1 2 3 33 33 H 1.09002 * 109.47773 * 186.50276 * 1 2 3 34 34 H 1.09003 * 109.58548 * 246.19778 * 7 6 4 35 35 H 1.08996 * 109.58845 * 6.62117 * 7 6 4 36 36 H 1.09001 * 109.46900 * 300.28473 * 10 8 7 37 37 H 1.08996 * 109.47471 * 60.28347 * 10 8 7 38 38 H 1.09007 * 109.46932 * 180.28928 * 10 8 7 39 39 H 1.08998 * 109.45702 * 178.49595 * 11 8 7 40 40 H 1.09001 * 109.44641 * 58.53147 * 11 8 7 41 41 H 1.08998 * 109.47399 * 179.85920 * 14 12 11 42 42 H 1.09002 * 109.47070 * 299.86096 * 14 12 11 43 43 H 1.09005 * 109.47124 * 59.85153 * 14 12 11 44 44 H 1.09004 * 109.58819 * 353.37776 * 15 6 4 45 45 H 1.08996 * 109.58964 * 113.65943 * 15 6 4 46 46 H 1.07996 * 126.91586 * 0.02562 * 17 16 2 47 47 H 1.09004 * 109.47101 * 215.24801 * 19 18 17 48 48 H 1.08997 * 109.46834 * 335.24703 * 19 18 17 49 49 H 0.96993 * 120.00954 * 359.97438 * 20 19 18 50 50 H 0.97004 * 119.99917 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.5051 -1.8235 1.1375 6 7 1.9560 -0.1091 2.4341 7 6 2.5457 -0.7379 3.6238 8 6 3.4932 0.2708 4.2908 9 1 4.3306 0.4818 3.6256 10 6 4.0178 -0.3145 5.6034 11 6 2.7300 1.5660 4.5779 12 6 2.2330 2.1694 3.2623 13 1 1.7098 3.1039 3.4654 14 6 3.4246 2.4412 2.3418 15 6 1.2761 1.1849 2.5827 16 7 2.0183 -0.6906 -1.1962 17 6 1.4386 -1.7621 -1.7852 18 6 2.2132 -2.0713 -2.8512 19 6 1.9888 -3.1912 -3.8344 20 7 1.2716 -2.6777 -5.0040 21 6 0.9548 -3.5193 -6.0368 22 1 1.2334 -4.5616 -5.9888 23 6 0.2747 -3.0329 -7.1449 24 7 -0.0652 -1.7628 -7.2031 25 14 -0.1580 -4.1811 -8.5533 26 1 -1.0271 -5.2753 -8.0508 27 1 -0.8770 -3.4219 -9.6078 28 1 1.0866 -4.7587 -9.1213 29 7 3.2200 -1.1904 -2.8575 30 7 3.0755 -0.3860 -1.8642 31 1 -0.3633 0.6113 0.8260 32 1 -0.3633 0.4097 -0.9425 33 1 -0.3635 -1.0210 0.1164 34 1 1.7547 -1.0159 4.3203 35 1 3.1044 -1.6261 3.3288 36 1 3.1797 -0.5265 6.2673 37 1 4.5612 -1.2369 5.3985 38 1 4.6862 0.4029 6.0797 39 1 3.3920 2.2748 5.0754 40 1 1.8784 1.3500 5.2230 41 1 3.0695 2.8686 1.4042 42 1 4.1052 3.1417 2.8258 43 1 3.9483 1.5067 2.1399 44 1 0.9968 1.5659 1.6004 45 1 0.3823 1.0601 3.1939 46 1 0.5379 -2.2675 -1.4696 47 1 2.9504 -3.5979 -4.1475 48 1 1.3986 -3.9764 -3.3621 49 1 1.0211 -1.7416 -5.0470 50 1 -0.5401 -1.4228 -7.9776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603176561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:10 Heat of formation + Delta-G solvation = 76.273384 kcal Electronic energy + Delta-G solvation = -29686.172523 eV Core-core repulsion = 25751.152097 eV Total energy + Delta-G solvation = -3935.020426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.95406 -40.98951 -38.54058 -35.71207 -34.72408 -34.14926 -33.57450 -31.90334 -30.68035 -29.83281 -27.56011 -27.32394 -26.61312 -25.82764 -24.65449 -22.73223 -22.28866 -21.94670 -20.80302 -20.11567 -19.15213 -17.92565 -17.45445 -16.92480 -16.14472 -16.00364 -15.79312 -15.24448 -14.80613 -14.67224 -14.56550 -14.40004 -14.37771 -13.85290 -13.68641 -13.43941 -13.30066 -13.05710 -12.75120 -12.58123 -12.55273 -12.50506 -12.29493 -12.19722 -12.05686 -11.76457 -11.59997 -11.34783 -11.16675 -11.08984 -10.85100 -10.74077 -10.70616 -10.48295 -10.32124 -10.06316 -9.73752 -9.59192 -9.12973 -8.80879 -8.69017 -6.84346 -5.67623 -2.96573 1.75638 2.06961 2.24876 2.69089 3.04712 3.50876 3.54697 3.56332 3.77038 4.03095 4.09984 4.21937 4.25939 4.33641 4.35713 4.58323 4.68227 4.76354 4.79222 4.89159 4.94135 5.00473 5.06347 5.08934 5.10473 5.16032 5.23096 5.33180 5.39510 5.41573 5.48714 5.50746 5.56768 5.60016 5.62794 5.70015 5.71648 5.72991 5.93205 5.94150 5.99762 6.26284 6.52083 6.72687 6.78296 6.86752 6.90653 7.63195 7.77222 8.50001 8.94548 9.61554 10.18127 10.54701 11.55253 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.002205 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.401834 B =12695.069039 C =12938.573779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.131 3.869 3 H 0.132 0.868 4 C 0.510 3.490 5 O -0.513 6.513 6 N -0.605 5.605 7 C 0.118 3.882 8 C -0.110 4.110 9 H 0.080 0.920 10 C -0.146 4.146 11 C -0.109 4.109 12 C -0.108 4.108 13 H 0.086 0.914 14 C -0.153 4.153 15 C 0.101 3.899 16 N -0.287 5.287 17 C -0.022 4.022 18 C -0.006 4.006 19 C 0.233 3.767 20 N -0.726 5.726 21 C -0.237 4.237 22 H 0.072 0.928 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.910 3.090 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.285 1.285 29 N -0.248 5.248 30 N -0.096 5.096 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.184 0.816 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 10.620 31.554 33.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 H 0.150 0.850 4 C 0.295 3.705 5 O -0.387 6.387 6 N -0.339 5.339 7 C -0.004 4.004 8 C -0.130 4.130 9 H 0.098 0.902 10 C -0.203 4.203 11 C -0.147 4.147 12 C -0.127 4.127 13 H 0.104 0.896 14 C -0.211 4.211 15 C -0.021 4.021 16 N -0.081 5.081 17 C -0.173 4.173 18 C -0.144 4.144 19 C 0.104 3.896 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.090 0.910 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.741 3.259 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.212 1.212 29 N -0.116 5.116 30 N -0.074 5.074 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.096 0.904 46 H 0.202 0.798 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.569 10.815 31.273 33.190 hybrid contribution -1.313 -0.752 -0.515 1.599 sum 1.256 10.063 30.757 32.386 Atomic orbital electron populations 1.22286 0.89627 1.05169 1.05456 1.21340 0.97422 0.97626 0.81207 0.85022 1.20497 0.79222 0.86493 0.84260 1.90806 1.44099 1.18538 1.85284 1.47934 1.56773 1.21719 1.07519 1.21802 0.96558 0.96442 0.85611 1.21652 0.98452 0.95243 0.97605 0.90175 1.21764 1.01138 1.01160 0.96278 1.21619 1.00107 0.96517 0.96450 1.21527 0.96976 0.98379 0.95867 0.89553 1.21917 0.97824 1.02119 0.99192 1.22057 0.95138 0.82776 1.02162 1.46742 1.18824 1.22306 1.20220 1.23205 1.03106 0.93358 0.97596 1.22387 0.93328 1.00557 0.98095 1.18936 0.96255 0.89017 0.85348 1.42303 1.67526 1.10419 1.16784 1.19204 1.29721 0.92078 0.95825 0.90955 1.24750 1.01537 0.96177 0.98595 1.69675 1.45272 1.12664 1.30595 0.86227 0.78034 0.79615 0.82064 1.21285 1.21789 1.21221 1.75054 1.21385 1.03214 1.11918 1.78233 1.03711 1.22172 1.03307 0.88993 0.89118 0.90186 0.91166 0.88891 0.92440 0.92284 0.92195 0.91368 0.91582 0.92422 0.92239 0.92114 0.89347 0.90423 0.79847 0.94300 0.94464 0.78128 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 8.35 37.16 0.31 -0.94 16 2 C 0.13 1.39 2.79 -69.08 -0.19 1.20 16 3 H 0.13 1.14 7.18 -51.93 -0.37 0.76 16 4 C 0.51 5.81 7.01 -10.99 -0.08 5.73 16 5 O -0.51 -8.25 15.75 5.55 0.09 -8.16 16 6 N -0.61 -4.65 2.41 -172.51 -0.42 -5.07 16 7 C 0.12 0.85 5.73 -3.49 -0.02 0.83 16 8 C -0.11 -0.62 2.54 -90.27 -0.23 -0.85 16 9 H 0.08 0.58 6.34 -51.93 -0.33 0.25 16 10 C -0.15 -0.68 9.20 37.16 0.34 -0.34 16 11 C -0.11 -0.45 4.71 -26.69 -0.13 -0.58 16 12 C -0.11 -0.45 3.21 -90.50 -0.29 -0.74 16 13 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 14 C -0.15 -0.88 8.71 37.16 0.32 -0.56 16 15 C 0.10 0.45 4.84 -3.71 -0.02 0.44 16 16 N -0.29 -4.60 2.85 -55.89 -0.16 -4.76 16 17 C -0.02 -0.39 10.42 -17.04 -0.18 -0.57 16 18 C -0.01 -0.13 6.62 -82.77 -0.55 -0.68 16 19 C 0.23 5.28 6.82 -5.20 -0.04 5.25 16 20 N -0.73 -19.71 5.59 -61.09 -0.34 -20.05 16 21 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 25 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 N -0.25 -5.50 12.41 33.29 0.41 -5.08 16 30 N -0.10 -1.86 13.16 60.35 0.79 -1.07 16 31 H 0.09 0.38 6.06 -51.93 -0.31 0.06 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.64 7.52 -51.93 -0.39 0.25 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.90 7.04 -51.93 -0.37 0.53 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.48 5.97 -51.93 -0.31 0.17 16 44 H 0.09 0.32 4.58 -51.93 -0.24 0.08 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.18 2.63 7.50 -52.49 -0.39 2.24 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.39 11.18 7.66 -40.82 -0.31 10.87 16 50 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -37.59 394.35 -7.03 -44.62 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.07 Total: 3.53 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.98 Total: 0.62 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 1.02 Total: -64.50 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.59 -7.03 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.889 kcal (2) G-P(sol) polarization free energy of solvation -37.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds