Wall clock time and date at job start Wed Apr 1 2020 00:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47139 * 2 1 4 4 C 1.50701 * 109.47010 * 120.00217 * 2 1 3 5 5 O 1.21285 * 119.99957 * 105.86614 * 4 2 1 6 6 N 1.34768 * 119.99977 * 285.87099 * 4 2 1 7 7 C 1.46924 * 120.63275 * 185.33347 * 6 4 2 8 8 C 1.53622 * 108.54791 * 126.36780 * 7 6 4 9 9 H 1.09002 * 109.62907 * 294.86286 * 8 7 6 10 10 C 1.53002 * 109.43310 * 174.72752 * 8 7 6 11 11 C 1.53041 * 109.24297 * 54.85382 * 8 7 6 12 12 C 1.53033 * 109.53642 * 298.51416 * 11 8 7 13 13 H 1.09002 * 109.49974 * 181.31617 * 12 11 8 14 14 C 1.53002 * 109.52852 * 301.39571 * 12 11 8 15 15 C 1.46924 * 120.63219 * 5.60748 * 6 4 2 16 16 N 1.46501 * 109.47191 * 239.99849 * 2 1 3 17 17 C 1.35317 * 125.86519 * 324.71973 * 16 2 1 18 18 C 1.35353 * 106.17246 * 179.90162 * 17 16 2 19 19 C 1.50703 * 126.75201 * 180.12597 * 18 17 16 20 20 N 1.46494 * 109.46857 * 95.24814 * 19 18 17 21 21 C 1.36943 * 119.99749 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99587 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00344 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99603 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00147 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47350 * 60.00044 * 25 23 21 27 27 H 1.48503 * 109.47161 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46958 * 299.99991 * 25 23 21 29 29 N 1.33780 * 106.49677 * 0.35349 * 18 17 16 30 30 N 1.28631 * 108.88165 * 359.77170 * 29 18 17 31 31 H 1.08997 * 109.47213 * 306.50466 * 1 2 3 32 32 H 1.09004 * 109.46919 * 66.50425 * 1 2 3 33 33 H 1.09002 * 109.47773 * 186.50276 * 1 2 3 34 34 H 1.09003 * 109.58548 * 246.19778 * 7 6 4 35 35 H 1.08996 * 109.58845 * 6.62117 * 7 6 4 36 36 H 1.09001 * 109.46900 * 300.28473 * 10 8 7 37 37 H 1.08996 * 109.47471 * 60.28347 * 10 8 7 38 38 H 1.09007 * 109.46932 * 180.28928 * 10 8 7 39 39 H 1.08998 * 109.45702 * 178.49595 * 11 8 7 40 40 H 1.09001 * 109.44641 * 58.53147 * 11 8 7 41 41 H 1.08998 * 109.47399 * 179.85920 * 14 12 11 42 42 H 1.09002 * 109.47070 * 299.86096 * 14 12 11 43 43 H 1.09005 * 109.47124 * 59.85153 * 14 12 11 44 44 H 1.09004 * 109.58819 * 353.37776 * 15 6 4 45 45 H 1.08996 * 109.58964 * 113.65943 * 15 6 4 46 46 H 1.07996 * 126.91586 * 0.02562 * 17 16 2 47 47 H 1.09004 * 109.47101 * 215.24801 * 19 18 17 48 48 H 1.08997 * 109.46834 * 335.24703 * 19 18 17 49 49 H 0.96993 * 120.00954 * 359.97438 * 20 19 18 50 50 H 0.97004 * 119.99917 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.5051 -1.8235 1.1375 6 7 1.9560 -0.1091 2.4341 7 6 2.5457 -0.7379 3.6238 8 6 3.4932 0.2708 4.2908 9 1 4.3306 0.4818 3.6256 10 6 4.0178 -0.3145 5.6034 11 6 2.7300 1.5660 4.5779 12 6 2.2330 2.1694 3.2623 13 1 1.7098 3.1039 3.4654 14 6 3.4246 2.4412 2.3418 15 6 1.2761 1.1849 2.5827 16 7 2.0183 -0.6906 -1.1962 17 6 1.4386 -1.7621 -1.7852 18 6 2.2132 -2.0713 -2.8512 19 6 1.9888 -3.1912 -3.8344 20 7 1.2716 -2.6777 -5.0040 21 6 0.9548 -3.5193 -6.0368 22 1 1.2334 -4.5616 -5.9888 23 6 0.2747 -3.0329 -7.1449 24 7 -0.0652 -1.7628 -7.2031 25 14 -0.1580 -4.1811 -8.5533 26 1 -1.0271 -5.2753 -8.0508 27 1 -0.8770 -3.4219 -9.6078 28 1 1.0866 -4.7587 -9.1213 29 7 3.2200 -1.1904 -2.8575 30 7 3.0755 -0.3860 -1.8642 31 1 -0.3633 0.6113 0.8260 32 1 -0.3633 0.4097 -0.9425 33 1 -0.3635 -1.0210 0.1164 34 1 1.7547 -1.0159 4.3203 35 1 3.1044 -1.6261 3.3288 36 1 3.1797 -0.5265 6.2673 37 1 4.5612 -1.2369 5.3985 38 1 4.6862 0.4029 6.0797 39 1 3.3920 2.2748 5.0754 40 1 1.8784 1.3500 5.2230 41 1 3.0695 2.8686 1.4042 42 1 4.1052 3.1417 2.8258 43 1 3.9483 1.5067 2.1399 44 1 0.9968 1.5659 1.6004 45 1 0.3823 1.0601 3.1939 46 1 0.5379 -2.2675 -1.4696 47 1 2.9504 -3.5979 -4.1475 48 1 1.3986 -3.9764 -3.3621 49 1 1.0211 -1.7416 -5.0470 50 1 -0.5401 -1.4228 -7.9776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603176561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:09 Heat of formation + Delta-G solvation = 50.144490 kcal Electronic energy + Delta-G solvation = -29687.305557 eV Core-core repulsion = 25751.152097 eV Total energy + Delta-G solvation = -3936.153460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.36221 -41.71695 -39.24077 -37.05084 -36.31948 -34.94945 -34.07207 -33.77077 -31.84995 -31.62291 -28.02338 -27.94190 -27.65691 -27.05819 -25.64333 -24.74690 -23.13674 -22.67237 -22.32142 -20.99918 -19.78546 -19.31337 -18.72411 -18.23840 -17.21844 -16.83574 -16.64408 -16.49682 -15.96494 -15.84685 -15.51314 -15.35714 -15.12009 -15.03408 -14.96672 -14.50760 -14.35383 -14.08070 -13.86744 -13.68972 -13.39376 -13.09911 -13.04967 -12.94843 -12.84532 -12.72904 -12.65572 -12.58312 -12.50272 -12.13073 -12.00035 -11.95608 -11.87364 -11.81076 -11.62766 -11.41400 -11.12623 -10.94864 -10.77886 -10.21772 -9.76235 -9.02255 -7.92270 -5.23109 0.47963 1.06549 1.31006 1.43496 1.51035 1.54685 1.60722 1.85587 2.60194 3.05208 3.20460 3.38541 3.50090 3.52451 3.66728 3.81413 3.83349 3.93084 3.94473 4.12963 4.19204 4.22006 4.33283 4.40616 4.43373 4.45021 4.53260 4.57541 4.62813 4.71224 4.75519 4.81485 4.82903 4.87982 4.97497 5.05646 5.06133 5.10300 5.14193 5.16351 5.21290 5.26984 5.33420 5.46098 5.49782 5.50968 5.56786 6.12085 6.26931 6.82346 7.33815 7.44771 8.03601 8.31728 9.31431 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028611 B = 0.002205 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.401834 B =12695.069039 C =12938.573779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 H 0.154 0.846 4 C 0.509 3.491 5 O -0.572 6.572 6 N -0.592 5.592 7 C 0.116 3.884 8 C -0.106 4.106 9 H 0.057 0.943 10 C -0.143 4.143 11 C -0.106 4.106 12 C -0.103 4.103 13 H 0.113 0.887 14 C -0.155 4.155 15 C 0.090 3.910 16 N -0.273 5.273 17 C -0.005 4.005 18 C -0.037 4.037 19 C 0.238 3.762 20 N -0.737 5.737 21 C -0.247 4.247 22 H 0.083 0.917 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.981 3.019 26 H -0.272 1.272 27 H -0.295 1.295 28 H -0.280 1.280 29 N -0.292 5.292 30 N -0.109 5.109 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.215 0.785 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.372 0.628 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 11.537 33.861 35.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.171 0.829 4 C 0.294 3.706 5 O -0.451 6.451 6 N -0.323 5.323 7 C -0.006 4.006 8 C -0.125 4.125 9 H 0.076 0.924 10 C -0.201 4.201 11 C -0.143 4.143 12 C -0.122 4.122 13 H 0.131 0.869 14 C -0.212 4.212 15 C -0.031 4.031 16 N -0.066 5.066 17 C -0.156 4.156 18 C -0.175 4.175 19 C 0.110 3.890 20 N -0.379 5.379 21 C -0.378 4.378 22 H 0.100 0.900 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.810 3.190 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.206 1.206 29 N -0.159 5.159 30 N -0.088 5.088 31 H 0.152 0.848 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.232 0.768 47 H 0.046 0.954 48 H 0.077 0.923 49 H 0.203 0.797 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.495 11.767 33.663 35.663 hybrid contribution -0.614 -0.959 -1.025 1.532 sum -0.119 10.807 32.638 34.381 Atomic orbital electron populations 1.22397 0.86633 1.06009 1.07067 1.21937 0.99690 0.97839 0.78923 0.82882 1.20588 0.78763 0.85893 0.85325 1.90787 1.47088 1.21064 1.86141 1.48016 1.55521 1.22429 1.06375 1.21876 0.97217 0.95885 0.85648 1.21590 0.97612 0.95935 0.97361 0.92445 1.21747 1.01613 1.00727 0.95993 1.21619 1.00549 0.95344 0.96800 1.21546 0.96167 0.99337 0.95160 0.86910 1.21927 0.98645 1.00759 0.99883 1.22467 0.95928 0.80967 1.03705 1.47123 1.17301 1.21552 1.20665 1.23531 1.03041 0.92978 0.96077 1.22248 0.94682 1.01093 0.99479 1.18921 0.95370 0.90129 0.84582 1.42469 1.67919 1.09647 1.17908 1.19659 1.28985 0.92774 0.96381 0.89956 1.25660 1.02026 0.97822 1.01400 1.69851 1.46459 1.14630 1.31252 0.85099 0.77857 0.77689 0.78403 1.19763 1.22155 1.20584 1.74976 1.22853 1.04411 1.13639 1.78095 1.05102 1.22155 1.03416 0.84765 0.89421 0.90402 0.89092 0.92119 0.91125 0.93509 0.91540 0.90803 0.89867 0.92366 0.91942 0.94850 0.88100 0.87369 0.76822 0.95393 0.92344 0.79681 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.35 71.98 0.60 -1.34 16 2 C 0.12 2.38 2.79 44.24 0.12 2.51 16 3 H 0.15 2.32 7.18 -2.39 -0.02 2.31 16 4 C 0.51 11.21 7.01 87.66 0.61 11.82 16 5 O -0.57 -18.86 15.75 -3.05 -0.05 -18.90 16 6 N -0.59 -8.05 2.41 -818.08 -1.97 -10.02 16 7 C 0.12 1.57 5.73 86.51 0.50 2.06 16 8 C -0.11 -1.08 2.54 -10.57 -0.03 -1.11 16 9 H 0.06 0.85 6.34 -2.39 -0.02 0.84 16 10 C -0.14 -1.19 9.20 71.98 0.66 -0.52 16 11 C -0.11 -0.54 4.71 30.62 0.14 -0.40 16 12 C -0.10 -0.49 3.21 -10.72 -0.03 -0.53 16 13 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 14 C -0.15 -1.55 8.71 71.98 0.63 -0.92 16 15 C 0.09 0.46 4.84 86.36 0.42 0.88 16 16 N -0.27 -8.67 2.85 -330.74 -0.94 -9.61 16 17 C 0.00 -0.16 10.42 83.49 0.87 0.71 16 18 C -0.04 -1.59 6.62 41.60 0.28 -1.31 16 19 C 0.24 10.96 6.82 85.64 0.58 11.55 16 20 N -0.74 -40.75 5.59 -347.18 -1.94 -42.69 16 21 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 24 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 25 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 29 N -0.29 -13.40 12.41 -48.59 -0.60 -14.01 16 30 N -0.11 -4.35 13.16 37.02 0.49 -3.86 16 31 H 0.13 0.45 6.06 -2.39 -0.01 0.43 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.02 7.52 -2.39 -0.02 1.00 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.24 7.04 -2.39 -0.02 1.23 16 36 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.03 0.52 5.97 -2.38 -0.01 0.50 16 44 H 0.10 0.28 4.58 -2.38 -0.01 0.27 16 45 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.22 5.81 7.50 -2.91 -0.02 5.79 16 47 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.37 22.22 7.66 -92.71 -0.71 21.51 16 50 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -85.52 394.35 4.19 -81.33 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.24 Total: 24.09 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.66 Total: 5.71 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -4.69 Total: -141.62 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.90 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -85.52 4.19 -81.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.476 kcal (2) G-P(sol) polarization free energy of solvation -85.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds