Wall clock time and date at job start Tue Mar 31 2020 23:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47374 * 239.99866 * 2 1 3 5 5 O 1.21273 * 119.99800 * 230.48600 * 4 2 1 6 6 N 1.34776 * 119.99904 * 50.47937 * 4 2 1 7 7 C 1.46925 * 120.62982 * 205.29059 * 6 4 2 8 8 H 1.08995 * 109.58426 * 113.82893 * 7 6 4 9 9 C 1.52997 * 109.58710 * 353.39665 * 7 6 4 10 10 C 1.53200 * 108.77455 * 233.61162 * 7 6 4 11 11 C 1.53037 * 109.31183 * 305.36937 * 10 7 6 12 12 C 1.53039 * 109.54287 * 61.36257 * 11 10 7 13 13 C 1.46931 * 120.62932 * 25.29443 * 6 4 2 14 14 H 1.08992 * 109.58501 * 246.17623 * 13 6 4 15 15 C 1.52995 * 109.58687 * 6.60087 * 13 6 4 16 16 N 1.46497 * 109.47206 * 119.99295 * 2 1 3 17 17 C 1.35312 * 125.86976 * 35.00603 * 16 2 1 18 18 C 1.35348 * 106.17793 * 179.97438 * 17 16 2 19 19 C 1.50702 * 126.74911 * 179.97438 * 18 17 16 20 20 N 1.46497 * 109.47311 * 94.99939 * 19 18 17 21 21 C 1.36936 * 120.00214 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99899 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00287 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00313 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47218 * 89.99760 * 25 23 21 27 27 H 1.48498 * 109.47496 * 209.99991 * 25 23 21 28 28 H 1.48502 * 109.46964 * 329.99998 * 25 23 21 29 29 N 1.33768 * 106.49526 * 359.97438 * 18 17 16 30 30 N 1.28632 * 108.88908 * 359.73553 * 29 18 17 31 31 H 1.08998 * 109.47053 * 305.88145 * 1 2 3 32 32 H 1.08997 * 109.47535 * 65.88116 * 1 2 3 33 33 H 1.09000 * 109.46912 * 185.88647 * 1 2 3 34 34 H 1.08995 * 109.47470 * 295.47259 * 9 7 6 35 35 H 1.09005 * 109.47118 * 55.47752 * 9 7 6 36 36 H 1.08997 * 109.46985 * 175.46992 * 9 7 6 37 37 H 1.08993 * 109.49277 * 185.41533 * 10 7 6 38 38 H 1.09005 * 109.49563 * 65.31665 * 10 7 6 39 39 H 1.09004 * 109.45890 * 301.34029 * 11 10 7 40 40 H 1.09000 * 109.46046 * 181.38822 * 11 10 7 41 41 H 1.09004 * 109.49255 * 58.58690 * 12 11 10 42 42 H 1.08995 * 109.49884 * 178.68290 * 12 11 10 43 43 H 1.08998 * 109.47648 * 165.78428 * 15 13 6 44 44 H 1.09001 * 109.47287 * 285.78833 * 15 13 6 45 45 H 1.09005 * 109.47183 * 45.78865 * 15 13 6 46 46 H 1.07999 * 126.90747 * 359.97180 * 17 16 2 47 47 H 1.09002 * 109.46652 * 214.99667 * 19 18 17 48 48 H 1.08991 * 109.47374 * 334.99483 * 19 18 17 49 49 H 0.97008 * 120.00070 * 359.97438 * 20 19 18 50 50 H 0.97004 * 120.00050 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.8645 -1.5866 -1.1274 6 7 1.5568 -0.3722 -2.4453 7 6 1.5727 -1.3393 -3.5513 8 1 0.5499 -1.5977 -3.8253 9 6 2.3254 -2.5995 -3.1198 10 6 2.2811 -0.7037 -4.7518 11 6 1.6069 0.6277 -5.0906 12 6 1.7272 1.5804 -3.8989 13 6 1.0125 0.9707 -2.6888 14 1 -0.0559 0.9006 -2.8925 15 6 1.2464 1.8498 -1.4586 16 7 2.0183 -0.6904 1.1962 17 6 1.4359 -1.7586 1.7885 18 6 2.2132 -2.0707 2.8516 19 6 1.9883 -3.1900 3.8354 20 7 2.7584 -4.3656 3.4219 21 6 2.7107 -5.5126 4.1684 22 1 2.1056 -5.5505 5.0621 23 6 3.4400 -6.6268 3.7763 24 7 4.1771 -6.5808 2.6869 25 14 3.3755 -8.1913 4.7950 26 1 2.2683 -9.0533 4.3087 27 1 4.6631 -8.9196 4.6659 28 1 3.1435 -7.8447 6.2202 29 7 3.2202 -1.1902 2.8574 30 7 3.0791 -0.3896 1.8605 31 1 -0.3633 0.6023 0.8326 32 1 -0.3634 0.4199 -0.9379 33 1 -0.3633 -1.0223 0.1054 34 1 3.3697 -2.3519 -2.9300 35 1 1.8753 -2.9981 -2.2106 36 1 2.2672 -3.3463 -3.9116 37 1 2.2154 -1.3734 -5.6092 38 1 3.3284 -0.5288 -4.5054 39 1 0.5537 0.4553 -5.3128 40 1 2.0933 1.0703 -5.9599 41 1 2.7798 1.7337 -3.6607 42 1 1.2674 2.5363 -4.1494 43 1 1.0785 2.8943 -1.7210 44 1 0.5558 1.5584 -0.6672 45 1 2.2717 1.7229 -1.1109 46 1 0.5324 -2.2609 1.4757 47 1 2.3129 -2.8732 4.8265 48 1 0.9282 -3.4416 3.8634 49 1 3.3023 -4.3315 2.6193 50 1 4.6865 -7.3595 2.4127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603180565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:04 Heat of formation + Delta-G solvation = 145.461616 kcal Electronic energy + Delta-G solvation = -30542.150837 eV Core-core repulsion = 26610.130638 eV Total energy + Delta-G solvation = -3932.020199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -42.99235 -41.37626 -37.91868 -36.82045 -34.80011 -33.65748 -33.27217 -31.84164 -30.72898 -29.80707 -29.27280 -26.74031 -26.10528 -25.34076 -24.11406 -22.69946 -22.11209 -21.83347 -20.93918 -20.60338 -19.63579 -17.72041 -17.05377 -16.75366 -16.31600 -16.22041 -15.41396 -15.20736 -14.75709 -14.63906 -14.54969 -14.42362 -14.21741 -13.63485 -13.46143 -13.38566 -13.29897 -13.04294 -12.92607 -12.57078 -12.49090 -12.25997 -12.11508 -11.93256 -11.72987 -11.46219 -11.33120 -11.21142 -11.10314 -10.99274 -10.86883 -10.79472 -10.72941 -10.31153 -10.07142 -9.97410 -9.65603 -9.37465 -8.84987 -8.78586 -8.66604 -6.80746 -5.63100 -2.92929 1.81030 2.11378 2.37340 2.73454 3.08052 3.51724 3.56342 3.59029 3.85050 4.05352 4.10707 4.21705 4.35266 4.40812 4.54280 4.64234 4.69856 4.71228 4.79317 4.90017 4.94840 5.00607 5.02616 5.08127 5.13117 5.30671 5.37577 5.39882 5.42423 5.45295 5.50868 5.57117 5.62572 5.63649 5.65628 5.76267 5.84204 5.96830 6.00976 6.16201 6.29972 6.47101 6.53462 6.77665 6.83981 6.89508 7.04799 7.79693 7.79977 8.53568 8.99322 9.65011 10.22575 10.58635 11.59410 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002909 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.446521 B = 9622.611674 C =10786.864457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 H 0.168 0.832 4 C 0.511 3.489 5 O -0.484 6.484 6 N -0.617 5.617 7 C 0.150 3.850 8 H 0.074 0.926 9 C -0.149 4.149 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.142 3.858 14 H 0.081 0.919 15 C -0.225 4.225 16 N -0.284 5.284 17 C -0.038 4.038 18 C -0.004 4.004 19 C 0.234 3.766 20 N -0.726 5.726 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.281 1.281 29 N -0.252 5.252 30 N -0.089 5.089 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.182 0.818 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.387 0.613 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 21.777 -18.676 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 H 0.184 0.816 4 C 0.295 3.705 5 O -0.355 6.355 6 N -0.356 5.356 7 C 0.048 3.952 8 H 0.092 0.908 9 C -0.206 4.206 10 C -0.171 4.171 11 C -0.158 4.158 12 C -0.168 4.168 13 C 0.039 3.961 14 H 0.099 0.901 15 C -0.281 4.281 16 N -0.078 5.078 17 C -0.188 4.188 18 C -0.142 4.142 19 C 0.105 3.895 20 N -0.371 5.371 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.207 1.207 29 N -0.119 5.119 30 N -0.068 5.068 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.199 0.801 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.220 0.780 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.779 22.119 -18.362 31.067 hybrid contribution -0.729 -1.572 -0.215 1.746 sum -12.507 20.546 -18.577 30.392 Atomic orbital electron populations 1.22436 0.90516 1.05030 1.05028 1.23284 0.97120 0.99655 0.81453 0.81570 1.20446 0.81756 0.84067 0.84201 1.90898 1.27572 1.31122 1.85944 1.48094 1.64225 1.13576 1.09656 1.21275 0.99486 0.88858 0.85621 0.90789 1.22226 1.02546 0.94857 1.00965 1.22032 1.00522 0.96858 0.97734 1.21524 1.01082 0.95444 0.97703 1.21980 1.01680 0.98692 0.94450 1.21190 0.97966 0.81415 0.95543 0.90119 1.23723 1.03802 1.01449 0.99088 1.46943 1.18099 1.22409 1.20391 1.23212 1.03992 0.93766 0.97815 1.22387 0.93058 0.99583 0.99165 1.18919 0.95413 0.82834 0.92358 1.42335 1.55266 1.08498 1.30960 1.19226 1.23127 0.89511 1.05122 0.90949 1.24770 0.99919 0.98312 0.98021 1.69703 1.33480 1.29748 1.24890 0.86169 0.76812 0.83570 0.79510 1.21819 1.21839 1.20700 1.75054 1.20532 1.03719 1.12624 1.78207 1.03288 1.22351 1.02948 0.89587 0.88081 0.90343 0.90400 0.91473 0.92790 0.90651 0.91207 0.91686 0.91479 0.91168 0.90458 0.90009 0.87897 0.90492 0.80058 0.94422 0.94686 0.77952 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 7.15 37.16 0.27 -0.86 16 2 C 0.09 0.96 2.67 -69.08 -0.18 0.77 16 3 H 0.17 1.43 4.03 -52.62 -0.21 1.22 16 4 C 0.51 6.36 6.07 -10.99 -0.07 6.29 16 5 O -0.48 -8.65 12.54 5.56 0.07 -8.58 16 6 N -0.62 -5.40 2.81 -157.74 -0.44 -5.84 16 7 C 0.15 1.32 3.49 -67.60 -0.24 1.08 16 8 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 9 C -0.15 -1.82 7.65 37.16 0.28 -1.54 16 10 C -0.13 -0.95 5.37 -26.61 -0.14 -1.09 16 11 C -0.12 -0.60 5.88 -26.69 -0.16 -0.76 16 12 C -0.13 -0.62 5.33 -26.61 -0.14 -0.76 16 13 C 0.14 0.73 2.42 -67.60 -0.16 0.57 16 14 H 0.08 0.28 7.64 -51.93 -0.40 -0.12 16 15 C -0.22 -0.98 6.91 37.15 0.26 -0.72 16 16 N -0.28 -4.52 2.76 -55.89 -0.15 -4.67 16 17 C -0.04 -0.64 10.60 -17.05 -0.18 -0.82 16 18 C 0.00 -0.09 6.62 -82.78 -0.55 -0.64 16 19 C 0.23 5.28 6.82 -5.19 -0.04 5.24 16 20 N -0.73 -20.28 5.59 -61.09 -0.34 -20.62 16 21 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 22 H 0.07 2.03 7.83 -52.49 -0.41 1.61 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -30.05 13.06 55.49 0.72 -29.32 16 25 Si 0.91 23.34 29.55 -169.99 -5.02 18.31 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 N -0.25 -5.60 12.41 33.29 0.41 -5.19 16 30 N -0.09 -1.75 13.17 60.35 0.79 -0.96 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.40 4.70 -51.93 -0.24 0.16 16 33 H 0.08 0.58 6.87 -51.93 -0.36 0.23 16 34 H 0.08 1.15 6.86 -51.93 -0.36 0.80 16 35 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 44 H 0.10 0.39 3.09 -53.63 -0.17 0.22 16 45 H 0.08 0.49 5.80 -51.93 -0.30 0.18 16 46 H 0.18 2.53 7.16 -52.49 -0.38 2.16 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.39 11.83 7.66 -40.82 -0.31 11.52 16 50 H 0.25 7.90 8.31 -40.82 -0.34 7.56 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -38.79 380.02 -7.22 -46.01 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.69 Total: 6.11 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.30 Total: -0.98 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: 0.99 Total: -66.60 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.79 -7.22 -46.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.468 kcal (2) G-P(sol) polarization free energy of solvation -38.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds