Wall clock time and date at job start Tue Mar 31 2020 23:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.50701 * 109.47374 * 239.99866 * 2 1 3 5 5 O 1.21273 * 119.99800 * 230.48600 * 4 2 1 6 6 N 1.34776 * 119.99904 * 50.47937 * 4 2 1 7 7 C 1.46925 * 120.62982 * 205.29059 * 6 4 2 8 8 H 1.08995 * 109.58426 * 113.82893 * 7 6 4 9 9 C 1.52997 * 109.58710 * 353.39665 * 7 6 4 10 10 C 1.53200 * 108.77455 * 233.61162 * 7 6 4 11 11 C 1.53037 * 109.31183 * 305.36937 * 10 7 6 12 12 C 1.53039 * 109.54287 * 61.36257 * 11 10 7 13 13 C 1.46931 * 120.62932 * 25.29443 * 6 4 2 14 14 H 1.08992 * 109.58501 * 246.17623 * 13 6 4 15 15 C 1.52995 * 109.58687 * 6.60087 * 13 6 4 16 16 N 1.46497 * 109.47206 * 119.99295 * 2 1 3 17 17 C 1.35312 * 125.86976 * 35.00603 * 16 2 1 18 18 C 1.35348 * 106.17793 * 179.97438 * 17 16 2 19 19 C 1.50702 * 126.74911 * 179.97438 * 18 17 16 20 20 N 1.46497 * 109.47311 * 94.99939 * 19 18 17 21 21 C 1.36936 * 120.00214 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99899 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00287 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00313 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47218 * 89.99760 * 25 23 21 27 27 H 1.48498 * 109.47496 * 209.99991 * 25 23 21 28 28 H 1.48502 * 109.46964 * 329.99998 * 25 23 21 29 29 N 1.33768 * 106.49526 * 359.97438 * 18 17 16 30 30 N 1.28632 * 108.88908 * 359.73553 * 29 18 17 31 31 H 1.08998 * 109.47053 * 305.88145 * 1 2 3 32 32 H 1.08997 * 109.47535 * 65.88116 * 1 2 3 33 33 H 1.09000 * 109.46912 * 185.88647 * 1 2 3 34 34 H 1.08995 * 109.47470 * 295.47259 * 9 7 6 35 35 H 1.09005 * 109.47118 * 55.47752 * 9 7 6 36 36 H 1.08997 * 109.46985 * 175.46992 * 9 7 6 37 37 H 1.08993 * 109.49277 * 185.41533 * 10 7 6 38 38 H 1.09005 * 109.49563 * 65.31665 * 10 7 6 39 39 H 1.09004 * 109.45890 * 301.34029 * 11 10 7 40 40 H 1.09000 * 109.46046 * 181.38822 * 11 10 7 41 41 H 1.09004 * 109.49255 * 58.58690 * 12 11 10 42 42 H 1.08995 * 109.49884 * 178.68290 * 12 11 10 43 43 H 1.08998 * 109.47648 * 165.78428 * 15 13 6 44 44 H 1.09001 * 109.47287 * 285.78833 * 15 13 6 45 45 H 1.09005 * 109.47183 * 45.78865 * 15 13 6 46 46 H 1.07999 * 126.90747 * 359.97180 * 17 16 2 47 47 H 1.09002 * 109.46652 * 214.99667 * 19 18 17 48 48 H 1.08991 * 109.47374 * 334.99483 * 19 18 17 49 49 H 0.97008 * 120.00070 * 359.97438 * 20 19 18 50 50 H 0.97004 * 120.00050 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.8645 -1.5866 -1.1274 6 7 1.5568 -0.3722 -2.4453 7 6 1.5727 -1.3393 -3.5513 8 1 0.5499 -1.5977 -3.8253 9 6 2.3254 -2.5995 -3.1198 10 6 2.2811 -0.7037 -4.7518 11 6 1.6069 0.6277 -5.0906 12 6 1.7272 1.5804 -3.8989 13 6 1.0125 0.9707 -2.6888 14 1 -0.0559 0.9006 -2.8925 15 6 1.2464 1.8498 -1.4586 16 7 2.0183 -0.6904 1.1962 17 6 1.4359 -1.7586 1.7885 18 6 2.2132 -2.0707 2.8516 19 6 1.9883 -3.1900 3.8354 20 7 2.7584 -4.3656 3.4219 21 6 2.7107 -5.5126 4.1684 22 1 2.1056 -5.5505 5.0621 23 6 3.4400 -6.6268 3.7763 24 7 4.1771 -6.5808 2.6869 25 14 3.3755 -8.1913 4.7950 26 1 2.2683 -9.0533 4.3087 27 1 4.6631 -8.9196 4.6659 28 1 3.1435 -7.8447 6.2202 29 7 3.2202 -1.1902 2.8574 30 7 3.0791 -0.3896 1.8605 31 1 -0.3633 0.6023 0.8326 32 1 -0.3634 0.4199 -0.9379 33 1 -0.3633 -1.0223 0.1054 34 1 3.3697 -2.3519 -2.9300 35 1 1.8753 -2.9981 -2.2106 36 1 2.2672 -3.3463 -3.9116 37 1 2.2154 -1.3734 -5.6092 38 1 3.3284 -0.5288 -4.5054 39 1 0.5537 0.4553 -5.3128 40 1 2.0933 1.0703 -5.9599 41 1 2.7798 1.7337 -3.6607 42 1 1.2674 2.5363 -4.1494 43 1 1.0785 2.8943 -1.7210 44 1 0.5558 1.5584 -0.6672 45 1 2.2717 1.7229 -1.1109 46 1 0.5324 -2.2609 1.4757 47 1 2.3129 -2.8732 4.8265 48 1 0.9282 -3.4416 3.8634 49 1 3.3023 -4.3315 2.6193 50 1 4.6865 -7.3595 2.4127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603180565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:01 Heat of formation + Delta-G solvation = 116.745226 kcal Electronic energy + Delta-G solvation = -30543.396073 eV Core-core repulsion = 26610.130638 eV Total energy + Delta-G solvation = -3933.265436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.35792 -42.21438 -38.72950 -37.71128 -36.71151 -34.75307 -33.94105 -33.69638 -31.76937 -31.60918 -29.99020 -27.83508 -27.22343 -26.44626 -25.03448 -24.75562 -22.86836 -22.67176 -22.16650 -21.67366 -20.45539 -19.40198 -18.59498 -17.71013 -17.20249 -17.02195 -16.76242 -16.38190 -16.01494 -15.76647 -15.62779 -15.45987 -15.08664 -15.01788 -14.76771 -14.50052 -14.23742 -13.98758 -13.85494 -13.70821 -13.64142 -13.20717 -13.07273 -12.98661 -12.81902 -12.77920 -12.56684 -12.29865 -12.14621 -12.09880 -11.90647 -11.84419 -11.75814 -11.73085 -11.55099 -11.42844 -11.24374 -10.96968 -10.45250 -10.18585 -9.58780 -9.04357 -7.93455 -5.25550 0.51138 1.14154 1.34527 1.44577 1.50351 1.51209 1.60215 1.88762 2.58588 3.11706 3.25394 3.38036 3.50925 3.56821 3.68815 3.78076 3.83382 3.92388 3.97605 4.15235 4.18095 4.19433 4.20526 4.33144 4.40800 4.45987 4.50262 4.58254 4.60060 4.61996 4.74457 4.78867 4.82925 4.92685 4.98214 5.01411 5.07404 5.12754 5.14336 5.17000 5.19900 5.22651 5.27220 5.47342 5.48688 5.57900 5.65826 6.24505 6.25873 6.91867 7.30304 7.50336 8.01776 8.28729 9.30703 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002909 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.446521 B = 9622.611674 C =10786.864457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.190 0.810 4 C 0.506 3.494 5 O -0.555 6.555 6 N -0.607 5.607 7 C 0.149 3.851 8 H 0.104 0.896 9 C -0.141 4.141 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.134 3.866 14 H 0.118 0.882 15 C -0.227 4.227 16 N -0.268 5.268 17 C -0.018 4.018 18 C -0.036 4.036 19 C 0.237 3.763 20 N -0.742 5.742 21 C -0.244 4.244 22 H 0.088 0.912 23 C -0.083 4.083 24 N -0.976 5.976 25 Si 0.984 3.016 26 H -0.281 1.281 27 H -0.299 1.299 28 H -0.264 1.264 29 N -0.297 5.297 30 N -0.107 5.107 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.052 0.948 46 H 0.215 0.785 47 H 0.032 0.968 48 H 0.064 0.936 49 H 0.367 0.633 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.321 23.708 -19.921 35.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 H 0.206 0.794 4 C 0.293 3.707 5 O -0.432 6.432 6 N -0.343 5.343 7 C 0.047 3.953 8 H 0.122 0.878 9 C -0.199 4.199 10 C -0.169 4.169 11 C -0.153 4.153 12 C -0.167 4.167 13 C 0.033 3.967 14 H 0.135 0.865 15 C -0.282 4.282 16 N -0.062 5.062 17 C -0.170 4.170 18 C -0.175 4.175 19 C 0.109 3.891 20 N -0.384 5.384 21 C -0.375 4.375 22 H 0.106 0.894 23 C -0.274 4.274 24 N -0.627 5.627 25 Si 0.812 3.188 26 H -0.208 1.208 27 H -0.226 1.226 28 H -0.189 1.189 29 N -0.164 5.164 30 N -0.085 5.085 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.070 0.930 46 H 0.232 0.768 47 H 0.050 0.950 48 H 0.082 0.918 49 H 0.198 0.802 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.736 24.147 -19.621 34.867 hybrid contribution 0.446 -2.028 0.018 2.077 sum -15.291 22.119 -19.603 33.277 Atomic orbital electron populations 1.22577 0.86599 1.05564 1.07812 1.24074 1.00049 0.99629 0.78580 0.79354 1.20830 0.81029 0.83123 0.85755 1.90901 1.30823 1.34494 1.86968 1.48240 1.62708 1.14994 1.08325 1.21379 1.00516 0.87424 0.85997 0.87809 1.22069 1.00591 0.97288 0.99920 1.22003 0.98993 0.98674 0.97204 1.21530 1.02030 0.93750 0.98008 1.22014 1.00649 0.99974 0.94070 1.21634 0.99750 0.79190 0.96162 0.86453 1.23720 1.02431 1.03110 0.98990 1.47349 1.16456 1.21647 1.20738 1.23578 1.04070 0.93242 0.96109 1.22276 0.94385 0.99992 1.00820 1.18980 0.95872 0.81760 0.92492 1.42578 1.55710 1.09905 1.30211 1.19745 1.22407 0.90050 1.05292 0.89410 1.25755 1.00038 1.02162 0.99472 1.69911 1.35042 1.30546 1.27197 0.84982 0.76429 0.78861 0.78508 1.20807 1.22589 1.18866 1.74970 1.21944 1.05038 1.14420 1.78067 1.04754 1.22569 1.03118 0.87485 0.84684 0.90862 0.94093 0.94668 0.91525 0.89588 0.93994 0.89551 0.90784 0.93402 0.87500 0.87174 0.86838 0.92986 0.76793 0.94974 0.91848 0.80206 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 7.15 71.98 0.51 -1.05 16 2 C 0.08 1.58 2.67 44.25 0.12 1.70 16 3 H 0.19 2.93 4.03 -3.04 -0.01 2.92 16 4 C 0.51 12.66 6.07 87.66 0.53 13.19 16 5 O -0.55 -21.33 12.54 -3.01 -0.04 -21.37 16 6 N -0.61 -9.66 2.81 -771.35 -2.17 -11.83 16 7 C 0.15 2.44 3.49 44.98 0.16 2.60 16 8 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 9 C -0.14 -3.71 7.65 71.98 0.55 -3.16 16 10 C -0.13 -1.70 5.37 30.67 0.16 -1.53 16 11 C -0.12 -0.77 5.88 30.62 0.18 -0.59 16 12 C -0.13 -0.79 5.33 30.67 0.16 -0.63 16 13 C 0.13 0.85 2.42 44.97 0.11 0.96 16 14 H 0.12 0.05 7.64 -2.39 -0.02 0.03 16 15 C -0.23 -1.14 6.91 71.98 0.50 -0.64 16 16 N -0.27 -8.50 2.76 -330.75 -0.91 -9.41 16 17 C -0.02 -0.62 10.60 83.49 0.89 0.26 16 18 C -0.04 -1.56 6.62 41.60 0.28 -1.29 16 19 C 0.24 10.84 6.82 85.63 0.58 11.42 16 20 N -0.74 -42.64 5.59 -347.18 -1.94 -44.58 16 21 C -0.24 -14.56 9.99 84.03 0.84 -13.72 16 22 H 0.09 4.86 7.83 -2.91 -0.02 4.83 16 23 C -0.08 -5.09 5.50 84.86 0.47 -4.63 16 24 N -0.98 -65.32 13.06 21.65 0.28 -65.04 16 25 Si 0.98 48.64 29.55 68.60 2.03 50.67 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 28 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 29 N -0.30 -13.78 12.41 -48.60 -0.60 -14.38 16 30 N -0.11 -4.31 13.17 37.02 0.49 -3.82 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.14 0.35 4.70 -2.39 -0.01 0.33 16 33 H 0.07 0.83 6.87 -2.39 -0.02 0.81 16 34 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 35 H 0.03 1.13 6.75 -2.38 -0.02 1.11 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.77 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.05 0.52 8.14 -2.38 -0.02 0.51 16 42 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.11 0.01 8.08 -2.39 -0.02 -0.01 16 44 H 0.11 0.33 3.09 -3.99 -0.01 0.32 16 45 H 0.05 0.57 5.80 -2.38 -0.01 0.55 16 46 H 0.22 5.61 7.16 -2.91 -0.02 5.58 16 47 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 49 H 0.37 23.59 7.66 -92.70 -0.71 22.88 16 50 H 0.25 16.10 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -92.47 380.02 3.42 -89.05 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.25 Total: 27.81 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 6.04 Total: 2.90 kcal Atomic # 7 Polarization: -144.21 SS G_CDS: -4.86 Total: -149.07 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.04 Total: -21.37 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -92.47 3.42 -89.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.798 kcal (2) G-P(sol) polarization free energy of solvation -92.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds