Wall clock time and date at job start Tue Mar 31 2020 23:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47457 * 2 1 4 4 C 1.50700 * 109.47054 * 239.99018 * 2 1 3 5 5 O 1.21277 * 120.00386 * 261.95519 * 4 2 1 6 6 N 1.34779 * 119.99568 * 81.96149 * 4 2 1 7 7 C 1.46931 * 120.63057 * 4.27399 * 6 4 2 8 8 H 1.09000 * 109.58790 * 6.63353 * 7 6 4 9 9 C 1.53000 * 109.59025 * 246.20442 * 7 6 4 10 10 C 1.53628 * 108.53913 * 126.37154 * 7 6 4 11 11 C 1.53041 * 109.23973 * 54.85851 * 10 7 6 12 12 C 1.53042 * 109.54035 * 298.50856 * 11 10 7 13 13 C 1.46921 * 120.63073 * 184.56209 * 6 4 2 14 14 H 1.09002 * 109.59096 * 113.79489 * 13 6 4 15 15 C 1.53002 * 109.58527 * 353.51394 * 13 6 4 16 16 N 1.46504 * 109.46659 * 119.99715 * 2 1 3 17 17 C 1.35312 * 125.87277 * 35.32359 * 16 2 1 18 18 C 1.35349 * 106.17663 * 180.11963 * 17 16 2 19 19 C 1.50694 * 126.75173 * 179.85685 * 18 17 16 20 20 N 1.46497 * 109.47816 * 94.70817 * 19 18 17 21 21 C 1.36935 * 120.00902 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99504 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00318 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00224 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99984 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47114 * 270.00110 * 25 23 21 27 27 H 1.48500 * 109.47220 * 149.99664 * 25 23 21 28 28 H 1.48502 * 109.46985 * 29.99979 * 25 23 21 29 29 N 1.33771 * 106.49706 * 359.58880 * 18 17 16 30 30 N 1.28640 * 108.88444 * 0.26398 * 29 18 17 31 31 H 1.08999 * 109.47694 * 174.11311 * 1 2 3 32 32 H 1.09006 * 109.47180 * 294.11468 * 1 2 3 33 33 H 1.09005 * 109.46793 * 54.11064 * 1 2 3 34 34 H 1.08999 * 109.46825 * 60.00056 * 9 7 6 35 35 H 1.08997 * 109.47219 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.46723 * 300.00415 * 9 7 6 37 37 H 1.08999 * 109.63559 * 294.86814 * 10 7 6 38 38 H 1.08993 * 109.42916 * 174.72378 * 10 7 6 39 39 H 1.09000 * 109.45590 * 178.48957 * 11 10 7 40 40 H 1.09002 * 109.46291 * 58.52904 * 11 10 7 41 41 H 1.09006 * 109.49475 * 301.41553 * 12 11 10 42 42 H 1.08997 * 109.49941 * 181.31795 * 12 11 10 43 43 H 1.08996 * 109.47617 * 62.45188 * 15 13 6 44 44 H 1.08999 * 109.47314 * 182.45501 * 15 13 6 45 45 H 1.09004 * 109.46653 * 302.44752 * 15 13 6 46 46 H 1.08004 * 126.91148 * 359.97051 * 17 16 2 47 47 H 1.09004 * 109.47146 * 334.70513 * 19 18 17 48 48 H 1.08999 * 109.47246 * 214.71215 * 19 18 17 49 49 H 0.97003 * 119.99466 * 359.97438 * 20 19 18 50 50 H 0.97007 * 120.00100 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.3730 -1.8726 -1.1629 6 7 2.1030 -0.0547 -2.4056 7 6 1.7832 1.3772 -2.4842 8 1 1.6236 1.7716 -1.4807 9 6 0.5192 1.5752 -3.3234 10 6 2.9637 2.1059 -3.1443 11 6 3.2662 1.4547 -4.4958 12 6 3.6623 -0.0080 -4.2820 13 6 2.4953 -0.7594 -3.6337 14 1 1.6517 -0.7890 -4.3234 15 6 2.9274 -2.1864 -3.2905 16 7 2.0182 -0.6906 1.1963 17 6 1.4390 -1.7625 1.7850 18 6 2.2131 -2.0710 2.8515 19 6 1.9887 -3.1908 3.8347 20 7 2.7598 -4.3658 3.4212 21 6 2.7126 -5.5131 4.1672 22 1 2.1065 -5.5519 5.0603 23 6 3.4429 -6.6265 3.7751 24 7 4.1803 -6.5797 2.6859 25 14 3.3779 -8.1918 4.7924 26 1 4.4496 -8.1593 5.8198 27 1 3.5770 -9.3667 3.9063 28 1 2.0552 -8.2938 5.4599 29 7 3.2199 -1.1902 2.8577 30 7 3.0754 -0.3858 1.8643 31 1 -0.3634 -1.0222 -0.1054 32 1 -0.3634 0.4199 0.9380 33 1 -0.3633 0.6025 -0.8326 34 1 -0.3116 1.0434 -2.8598 35 1 0.2840 2.6380 -3.3808 36 1 0.6852 1.1854 -4.3276 37 1 3.8419 2.0368 -2.5024 38 1 2.7043 3.1537 -3.2953 39 1 4.0860 1.9859 -4.9794 40 1 2.3798 1.5020 -5.1283 41 1 4.5340 -0.0572 -3.6293 42 1 3.9003 -0.4647 -5.2426 43 1 2.0852 -2.7273 -2.8592 44 1 3.2593 -2.6934 -4.1965 45 1 3.7459 -2.1550 -2.5712 46 1 0.5386 -2.2683 1.4689 47 1 0.9286 -3.4432 3.8622 48 1 2.3125 -2.8741 4.8261 49 1 3.3039 -4.3310 2.6189 50 1 4.2138 -5.7669 2.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603180569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:10 Heat of formation + Delta-G solvation = 94.791273 kcal Electronic energy + Delta-G solvation = -30343.394556 eV Core-core repulsion = 26409.177125 eV Total energy + Delta-G solvation = -3934.217430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 14.38 seconds Orbital eigenvalues (eV) -43.03551 -41.16216 -38.22616 -35.92574 -34.88588 -33.63913 -33.32319 -32.00266 -30.63796 -29.70980 -29.46998 -26.94500 -25.91350 -25.04150 -24.10019 -23.03821 -22.75499 -21.77302 -20.95395 -20.59965 -19.01731 -17.65457 -17.32758 -17.06916 -16.25805 -15.87271 -15.74985 -15.42174 -14.87760 -14.70563 -14.54743 -14.16076 -14.02111 -13.72160 -13.56695 -13.51615 -13.30059 -13.06124 -13.00432 -12.80211 -12.65018 -12.38359 -12.25923 -12.23068 -12.07885 -11.82198 -11.43450 -11.35247 -11.19914 -11.03930 -10.92170 -10.64745 -10.52774 -10.42222 -10.08225 -9.92231 -9.26607 -9.16271 -8.97551 -8.78036 -8.71267 -6.87581 -5.97371 -2.96569 1.68911 2.08568 2.28901 2.65677 2.95260 3.59673 3.65999 3.78480 3.79387 3.97866 4.09179 4.24197 4.32940 4.38522 4.47852 4.63088 4.70579 4.77244 4.80652 4.88083 4.91222 4.98843 5.01189 5.07723 5.16784 5.31431 5.32056 5.36262 5.41536 5.42412 5.48317 5.56560 5.58110 5.63214 5.68015 5.75140 5.84689 5.88062 6.02990 6.06069 6.07761 6.43531 6.46051 6.68636 6.72728 6.80712 6.95535 7.76647 7.91745 8.86023 8.89137 9.35753 10.22559 10.38601 11.51356 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002802 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.708768 B = 9991.229217 C =10907.529725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.129 0.871 4 C 0.505 3.495 5 O -0.496 6.496 6 N -0.599 5.599 7 C 0.126 3.874 8 H 0.092 0.908 9 C -0.167 4.167 10 C -0.131 4.131 11 C -0.121 4.121 12 C -0.134 4.134 13 C 0.147 3.853 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.287 5.287 17 C -0.020 4.020 18 C -0.012 4.012 19 C 0.240 3.760 20 N -0.737 5.737 21 C -0.331 4.331 22 H 0.067 0.933 23 C -0.046 4.046 24 N -0.943 5.943 25 Si 1.085 2.915 26 H -0.295 1.295 27 H -0.289 1.289 28 H -0.295 1.295 29 N -0.249 5.249 30 N -0.097 5.097 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.185 0.815 47 H 0.037 0.963 48 H 0.039 0.961 49 H 0.369 0.631 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.893 23.250 -18.438 31.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.147 0.853 4 C 0.290 3.710 5 O -0.369 6.369 6 N -0.334 5.334 7 C 0.023 3.977 8 H 0.110 0.890 9 C -0.224 4.224 10 C -0.169 4.169 11 C -0.158 4.158 12 C -0.172 4.172 13 C 0.045 3.955 14 H 0.091 0.909 15 C -0.199 4.199 16 N -0.081 5.081 17 C -0.170 4.170 18 C -0.149 4.149 19 C 0.111 3.889 20 N -0.383 5.383 21 C -0.462 4.462 22 H 0.085 0.915 23 C -0.244 4.244 24 N -0.589 5.589 25 Si 0.916 3.084 26 H -0.223 1.223 27 H -0.215 1.215 28 H -0.221 1.221 29 N -0.117 5.117 30 N -0.076 5.076 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.202 0.798 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.203 0.797 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.081 21.983 -17.964 29.806 hybrid contribution -1.285 1.117 -0.691 1.838 sum -10.367 23.100 -18.654 31.449 Atomic orbital electron populations 1.22169 0.89684 1.05116 1.04944 1.21493 0.97401 0.97534 0.81638 0.85339 1.20439 0.78943 0.87466 0.84164 1.90940 1.46013 1.16093 1.83878 1.48160 1.67944 1.09742 1.07602 1.21554 0.95320 0.80212 1.00627 0.89039 1.22227 0.96629 1.02595 1.00998 1.22015 0.98100 0.99399 0.97403 1.21553 1.01771 0.95644 0.96848 1.22037 0.98415 0.95437 1.01302 1.21323 0.96549 0.92886 0.84776 0.90883 1.22253 1.03902 0.93291 1.00415 1.46811 1.18587 1.22400 1.20262 1.23212 1.03817 0.93044 0.96925 1.22434 0.93298 0.99895 0.99280 1.18842 0.95393 0.82358 0.92276 1.42329 1.55791 1.09539 1.30644 1.20048 1.27478 0.91502 1.07178 0.91521 1.25797 0.96998 1.01472 1.00106 1.70799 1.41847 1.29994 1.16230 0.83173 0.75183 0.75449 0.74576 1.22330 1.21483 1.22140 1.75055 1.20486 1.03527 1.12604 1.78242 1.03605 1.22414 1.03303 0.90184 0.89620 0.89111 0.91942 0.90957 0.91502 0.91057 0.90363 0.91453 0.91427 0.91214 0.90551 0.90603 0.93496 0.91056 0.79833 0.94542 0.94360 0.79729 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.64 37.16 0.32 -0.79 16 2 C 0.13 1.33 2.81 -69.08 -0.19 1.13 16 3 H 0.13 1.05 6.23 -51.93 -0.32 0.73 16 4 C 0.51 6.15 6.84 -10.98 -0.08 6.08 16 5 O -0.50 -8.43 11.73 5.56 0.07 -8.37 16 6 N -0.60 -5.23 2.68 -157.48 -0.42 -5.66 16 7 C 0.13 0.68 2.73 -67.37 -0.18 0.49 16 8 H 0.09 0.40 5.40 -51.93 -0.28 0.12 16 9 C -0.17 -0.61 8.96 37.16 0.33 -0.27 16 10 C -0.13 -0.66 5.58 -26.38 -0.15 -0.81 16 11 C -0.12 -0.63 5.68 -26.69 -0.15 -0.78 16 12 C -0.13 -0.97 5.38 -26.61 -0.14 -1.11 16 13 C 0.15 1.29 3.07 -67.60 -0.21 1.08 16 14 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 15 C -0.14 -1.71 7.60 37.16 0.28 -1.43 16 16 N -0.29 -4.51 2.93 -55.89 -0.16 -4.67 16 17 C -0.02 -0.34 10.33 -17.05 -0.18 -0.51 16 18 C -0.01 -0.24 6.61 -82.78 -0.55 -0.79 16 19 C 0.24 5.50 6.82 -5.20 -0.04 5.46 16 20 N -0.74 -20.68 5.59 -61.09 -0.34 -21.02 16 21 C -0.33 -9.97 9.99 -15.06 -0.15 -10.12 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.05 -1.42 5.50 -17.44 -0.10 -1.52 16 24 N -0.94 -31.31 13.70 55.49 0.76 -30.55 16 25 Si 1.09 27.27 29.92 -169.99 -5.09 22.19 16 26 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 N -0.25 -5.47 12.41 33.29 0.41 -5.05 16 30 N -0.10 -1.86 13.17 60.35 0.79 -1.07 16 31 H 0.08 0.62 7.49 -51.93 -0.39 0.24 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.37 6.49 -51.93 -0.34 0.03 16 34 H 0.06 0.23 6.95 -51.93 -0.36 -0.13 16 35 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.27 5.71 -51.93 -0.30 -0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.29 6.49 -51.93 -0.34 -0.05 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.07 6.62 -51.93 -0.34 0.73 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.09 6.88 -51.93 -0.36 0.73 16 46 H 0.18 2.64 7.48 -52.48 -0.39 2.25 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.37 11.05 6.49 -40.82 -0.26 10.79 16 50 H 0.26 8.61 6.78 -40.82 -0.28 8.33 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -39.17 385.70 -7.12 -46.29 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.78 Total: 5.99 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.17 Total: -3.89 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: 1.04 Total: -68.02 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.07 Total: -8.37 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: -5.09 Total: 22.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.17 -7.12 -46.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.079 kcal (2) G-P(sol) polarization free energy of solvation -39.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.39 seconds