Wall clock time and date at job start Tue Mar 31 2020 23:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47457 * 2 1 4 4 C 1.50700 * 109.47054 * 239.99018 * 2 1 3 5 5 O 1.21277 * 120.00386 * 261.95519 * 4 2 1 6 6 N 1.34779 * 119.99568 * 81.96149 * 4 2 1 7 7 C 1.46931 * 120.63057 * 4.27399 * 6 4 2 8 8 H 1.09000 * 109.58790 * 6.63353 * 7 6 4 9 9 C 1.53000 * 109.59025 * 246.20442 * 7 6 4 10 10 C 1.53628 * 108.53913 * 126.37154 * 7 6 4 11 11 C 1.53041 * 109.23973 * 54.85851 * 10 7 6 12 12 C 1.53042 * 109.54035 * 298.50856 * 11 10 7 13 13 C 1.46921 * 120.63073 * 184.56209 * 6 4 2 14 14 H 1.09002 * 109.59096 * 113.79489 * 13 6 4 15 15 C 1.53002 * 109.58527 * 353.51394 * 13 6 4 16 16 N 1.46504 * 109.46659 * 119.99715 * 2 1 3 17 17 C 1.35312 * 125.87277 * 35.32359 * 16 2 1 18 18 C 1.35349 * 106.17663 * 180.11963 * 17 16 2 19 19 C 1.50694 * 126.75173 * 179.85685 * 18 17 16 20 20 N 1.46497 * 109.47816 * 94.70817 * 19 18 17 21 21 C 1.36935 * 120.00902 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99504 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00318 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00224 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99984 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47114 * 270.00110 * 25 23 21 27 27 H 1.48500 * 109.47220 * 149.99664 * 25 23 21 28 28 H 1.48502 * 109.46985 * 29.99979 * 25 23 21 29 29 N 1.33771 * 106.49706 * 359.58880 * 18 17 16 30 30 N 1.28640 * 108.88444 * 0.26398 * 29 18 17 31 31 H 1.08999 * 109.47694 * 174.11311 * 1 2 3 32 32 H 1.09006 * 109.47180 * 294.11468 * 1 2 3 33 33 H 1.09005 * 109.46793 * 54.11064 * 1 2 3 34 34 H 1.08999 * 109.46825 * 60.00056 * 9 7 6 35 35 H 1.08997 * 109.47219 * 180.02562 * 9 7 6 36 36 H 1.08996 * 109.46723 * 300.00415 * 9 7 6 37 37 H 1.08999 * 109.63559 * 294.86814 * 10 7 6 38 38 H 1.08993 * 109.42916 * 174.72378 * 10 7 6 39 39 H 1.09000 * 109.45590 * 178.48957 * 11 10 7 40 40 H 1.09002 * 109.46291 * 58.52904 * 11 10 7 41 41 H 1.09006 * 109.49475 * 301.41553 * 12 11 10 42 42 H 1.08997 * 109.49941 * 181.31795 * 12 11 10 43 43 H 1.08996 * 109.47617 * 62.45188 * 15 13 6 44 44 H 1.08999 * 109.47314 * 182.45501 * 15 13 6 45 45 H 1.09004 * 109.46653 * 302.44752 * 15 13 6 46 46 H 1.08004 * 126.91148 * 359.97051 * 17 16 2 47 47 H 1.09004 * 109.47146 * 334.70513 * 19 18 17 48 48 H 1.08999 * 109.47246 * 214.71215 * 19 18 17 49 49 H 0.97003 * 119.99466 * 359.97438 * 20 19 18 50 50 H 0.97007 * 120.00100 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.3730 -1.8726 -1.1629 6 7 2.1030 -0.0547 -2.4056 7 6 1.7832 1.3772 -2.4842 8 1 1.6236 1.7716 -1.4807 9 6 0.5192 1.5752 -3.3234 10 6 2.9637 2.1059 -3.1443 11 6 3.2662 1.4547 -4.4958 12 6 3.6623 -0.0080 -4.2820 13 6 2.4953 -0.7594 -3.6337 14 1 1.6517 -0.7890 -4.3234 15 6 2.9274 -2.1864 -3.2905 16 7 2.0182 -0.6906 1.1963 17 6 1.4390 -1.7625 1.7850 18 6 2.2131 -2.0710 2.8515 19 6 1.9887 -3.1908 3.8347 20 7 2.7598 -4.3658 3.4212 21 6 2.7126 -5.5131 4.1672 22 1 2.1065 -5.5519 5.0603 23 6 3.4429 -6.6265 3.7751 24 7 4.1803 -6.5797 2.6859 25 14 3.3779 -8.1918 4.7924 26 1 4.4496 -8.1593 5.8198 27 1 3.5770 -9.3667 3.9063 28 1 2.0552 -8.2938 5.4599 29 7 3.2199 -1.1902 2.8577 30 7 3.0754 -0.3858 1.8643 31 1 -0.3634 -1.0222 -0.1054 32 1 -0.3634 0.4199 0.9380 33 1 -0.3633 0.6025 -0.8326 34 1 -0.3116 1.0434 -2.8598 35 1 0.2840 2.6380 -3.3808 36 1 0.6852 1.1854 -4.3276 37 1 3.8419 2.0368 -2.5024 38 1 2.7043 3.1537 -3.2953 39 1 4.0860 1.9859 -4.9794 40 1 2.3798 1.5020 -5.1283 41 1 4.5340 -0.0572 -3.6293 42 1 3.9003 -0.4647 -5.2426 43 1 2.0852 -2.7273 -2.8592 44 1 3.2593 -2.6934 -4.1965 45 1 3.7459 -2.1550 -2.5712 46 1 0.5386 -2.2683 1.4689 47 1 0.9286 -3.4432 3.8622 48 1 2.3125 -2.8741 4.8261 49 1 3.3039 -4.3310 2.6189 50 1 4.2138 -5.7669 2.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603180569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:06 Heat of formation + Delta-G solvation = 66.510971 kcal Electronic energy + Delta-G solvation = -30344.620882 eV Core-core repulsion = 26409.177125 eV Total energy + Delta-G solvation = -3935.443756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -44.43992 -41.98334 -39.01071 -37.31896 -36.59164 -34.51502 -34.01799 -33.82968 -31.72217 -31.54482 -30.09617 -27.58089 -27.50710 -26.20724 -24.93674 -24.81024 -23.87941 -22.72772 -22.34079 -21.54478 -19.90522 -19.47833 -18.49125 -18.18893 -17.19867 -17.06487 -16.74745 -16.56221 -16.04256 -15.89366 -15.77839 -15.37598 -15.10435 -14.93685 -14.66342 -14.61535 -14.24900 -14.10947 -13.99728 -13.87291 -13.59467 -13.27733 -13.01655 -12.98575 -12.80474 -12.75508 -12.71899 -12.58227 -12.48152 -12.09946 -11.95131 -11.86266 -11.84949 -11.63288 -11.48806 -11.37633 -11.32149 -10.98178 -10.39784 -10.15922 -9.71922 -9.17019 -8.43031 -5.37010 0.38690 1.02172 1.34075 1.36604 1.58281 1.71097 1.79529 1.84812 2.73550 3.02429 3.14340 3.34761 3.41930 3.48198 3.66287 3.75584 3.82509 3.87143 3.93765 3.94582 4.07273 4.12384 4.22243 4.32826 4.35862 4.40894 4.43974 4.53786 4.59560 4.62145 4.71113 4.75391 4.87940 4.90728 4.98182 5.00235 5.02213 5.03583 5.05836 5.08966 5.18135 5.25821 5.27227 5.47022 5.52523 5.55629 5.58025 6.17608 6.42140 6.89158 7.01877 7.36891 7.91535 8.07816 9.08118 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002802 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.708768 B = 9991.229217 C =10907.529725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.117 3.883 3 H 0.157 0.843 4 C 0.499 3.501 5 O -0.558 6.558 6 N -0.588 5.588 7 C 0.118 3.882 8 H 0.106 0.894 9 C -0.163 4.163 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.147 3.853 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.271 5.271 17 C -0.001 4.001 18 C -0.042 4.042 19 C 0.243 3.757 20 N -0.752 5.752 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.111 4.111 24 N -0.976 5.976 25 Si 1.138 2.862 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.264 1.264 29 N -0.292 5.292 30 N -0.108 5.108 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.213 0.787 47 H 0.061 0.939 48 H 0.032 0.968 49 H 0.354 0.646 50 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 25.565 -19.651 35.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 H 0.174 0.826 4 C 0.284 3.716 5 O -0.436 6.436 6 N -0.322 5.322 7 C 0.016 3.984 8 H 0.123 0.877 9 C -0.220 4.220 10 C -0.169 4.169 11 C -0.154 4.154 12 C -0.169 4.169 13 C 0.045 3.955 14 H 0.117 0.883 15 C -0.190 4.190 16 N -0.065 5.065 17 C -0.152 4.152 18 C -0.180 4.180 19 C 0.115 3.885 20 N -0.397 5.397 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.301 4.301 24 N -0.624 5.624 25 Si 0.961 3.039 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.188 1.188 29 N -0.159 5.159 30 N -0.087 5.087 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.229 0.771 47 H 0.079 0.921 48 H 0.050 0.950 49 H 0.185 0.815 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.912 24.422 -19.196 33.269 hybrid contribution -0.445 0.550 -0.443 0.835 sum -12.356 24.972 -19.639 34.088 Atomic orbital electron populations 1.22277 0.86279 1.05544 1.07213 1.22117 0.99974 0.97804 0.78841 0.82590 1.20766 0.78485 0.86906 0.85416 1.90944 1.49015 1.18716 1.84904 1.48293 1.66190 1.11177 1.06502 1.21947 0.96631 0.77671 1.02158 0.87669 1.22224 0.95187 1.04242 1.00370 1.22048 0.97138 1.00922 0.96804 1.21558 1.02865 0.93606 0.97346 1.22014 0.96646 0.97313 1.00963 1.21381 0.98029 0.90934 0.85183 0.88321 1.22072 1.01476 0.96011 0.99486 1.47186 1.17009 1.21635 1.20635 1.23490 1.03789 0.92656 0.95309 1.22236 0.94688 1.00250 1.00805 1.18879 0.95650 0.81458 0.92485 1.42592 1.56280 1.10798 1.30023 1.20501 1.26520 0.92136 1.07204 0.90318 1.27494 0.96681 1.05390 1.00501 1.70955 1.44331 1.29186 1.17927 0.82529 0.76909 0.71128 0.73299 1.21194 1.21982 1.18838 1.74977 1.21767 1.04762 1.14403 1.78101 1.04855 1.22398 1.03324 0.91037 0.88355 0.85409 0.91592 0.88613 0.91526 0.93145 0.87614 0.90752 0.89474 0.93953 0.89442 0.93029 0.92301 0.95168 0.77060 0.92101 0.95003 0.81491 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.64 71.98 0.62 -1.01 16 2 C 0.12 2.26 2.81 44.24 0.12 2.39 16 3 H 0.16 2.12 6.23 -2.39 -0.01 2.11 16 4 C 0.50 12.05 6.84 87.66 0.60 12.65 16 5 O -0.56 -20.06 11.73 -3.02 -0.04 -20.09 16 6 N -0.59 -9.51 2.68 -770.52 -2.06 -11.57 16 7 C 0.12 0.87 2.73 45.12 0.12 0.99 16 8 H 0.11 0.49 5.40 -2.39 -0.01 0.48 16 9 C -0.16 -0.42 8.96 71.98 0.65 0.23 16 10 C -0.13 -0.94 5.58 30.82 0.17 -0.77 16 11 C -0.12 -0.88 5.68 30.62 0.17 -0.71 16 12 C -0.13 -1.79 5.38 30.67 0.16 -1.62 16 13 C 0.15 2.46 3.07 44.98 0.14 2.60 16 14 H 0.10 1.21 7.48 -2.39 -0.02 1.20 16 15 C -0.13 -3.46 7.60 71.98 0.55 -2.91 16 16 N -0.27 -8.43 2.93 -330.73 -0.97 -9.40 16 17 C 0.00 -0.02 10.33 83.49 0.86 0.84 16 18 C -0.04 -1.78 6.61 41.59 0.28 -1.51 16 19 C 0.24 11.30 6.82 85.63 0.58 11.88 16 20 N -0.75 -43.49 5.59 -347.20 -1.94 -45.43 16 21 C -0.33 -20.25 9.99 84.03 0.84 -19.41 16 22 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 23 C -0.11 -6.92 5.50 84.86 0.47 -6.45 16 24 N -0.98 -66.96 13.70 21.65 0.30 -66.67 16 25 Si 1.14 55.00 29.92 68.60 2.05 57.05 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 28 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 29 N -0.29 -13.27 12.41 -48.61 -0.60 -13.87 16 30 N -0.11 -4.22 13.17 37.02 0.49 -3.74 16 31 H 0.07 0.93 7.49 -2.39 -0.02 0.92 16 32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.13 0.42 6.49 -2.38 -0.02 0.40 16 34 H 0.07 0.16 6.95 -2.39 -0.02 0.15 16 35 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.07 0.22 5.71 -2.39 -0.01 0.20 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 0.38 6.49 -2.39 -0.02 0.36 16 41 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 1.57 6.62 -2.39 -0.02 1.56 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.03 1.01 6.88 -2.39 -0.02 0.99 16 46 H 0.21 5.84 7.48 -2.91 -0.02 5.81 16 47 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 48 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.35 22.30 6.49 -92.71 -0.60 21.70 16 50 H 0.24 16.75 6.78 -92.70 -0.63 16.12 16 Total: -1.00 -91.74 385.70 4.06 -87.68 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.50 Total: 28.84 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.34 Total: -2.81 kcal Atomic # 7 Polarization: -145.88 SS G_CDS: -4.79 Total: -150.67 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.04 Total: -20.09 kcal Atomic # 14 Polarization: 55.00 SS G_CDS: 2.05 Total: 57.05 kcal Total: -91.74 4.06 -87.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.194 kcal (2) G-P(sol) polarization free energy of solvation -91.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds