Wall clock time and date at job start Tue Mar 31 2020 23:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46984 * 2 1 4 4 C 1.50701 * 109.47055 * 119.99509 * 2 1 3 5 5 O 1.21282 * 119.99742 * 105.51069 * 4 2 1 6 6 N 1.34780 * 120.00411 * 285.51278 * 4 2 1 7 7 C 1.46929 * 120.62542 * 4.94781 * 6 4 2 8 8 H 1.09000 * 109.58966 * 6.62399 * 7 6 4 9 9 C 1.53005 * 109.58143 * 246.20207 * 7 6 4 10 10 C 1.53622 * 108.54033 * 126.37292 * 7 6 4 11 11 C 1.53036 * 109.24514 * 54.85355 * 10 7 6 12 12 C 1.53044 * 109.53941 * 298.50995 * 11 10 7 13 13 C 1.46920 * 120.63120 * 185.23173 * 6 4 2 14 14 H 1.09000 * 109.59155 * 113.79760 * 13 6 4 15 15 C 1.53001 * 109.58791 * 353.36776 * 13 6 4 16 16 N 1.46495 * 109.47310 * 239.99538 * 2 1 3 17 17 C 1.35309 * 125.87180 * 325.00262 * 16 2 1 18 18 C 1.35347 * 106.17839 * 179.97438 * 17 16 2 19 19 C 1.50709 * 126.75257 * 179.97438 * 18 17 16 20 20 N 1.46498 * 109.46675 * 95.00420 * 19 18 17 21 21 C 1.36940 * 119.99715 * 180.02562 * 20 19 18 22 22 H 1.07997 * 120.00013 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99760 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00314 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99709 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46896 * 269.99645 * 25 23 21 27 27 H 1.48501 * 109.47248 * 150.00178 * 25 23 21 28 28 H 1.48495 * 109.47351 * 29.99922 * 25 23 21 29 29 N 1.33772 * 106.49556 * 0.26579 * 18 17 16 30 30 N 1.28634 * 108.88418 * 359.55907 * 29 18 17 31 31 H 1.08995 * 109.47518 * 304.81231 * 1 2 3 32 32 H 1.09002 * 109.46915 * 64.81103 * 1 2 3 33 33 H 1.09003 * 109.47178 * 184.81113 * 1 2 3 34 34 H 1.09003 * 109.47248 * 60.00815 * 9 7 6 35 35 H 1.09001 * 109.46396 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.47330 * 299.99850 * 9 7 6 37 37 H 1.08999 * 109.63579 * 294.86033 * 10 7 6 38 38 H 1.08998 * 109.45465 * 174.73564 * 10 7 6 39 39 H 1.08997 * 109.46140 * 178.49018 * 11 10 7 40 40 H 1.09004 * 109.46329 * 58.52931 * 11 10 7 41 41 H 1.09002 * 109.49710 * 301.41448 * 12 11 10 42 42 H 1.08998 * 109.49872 * 181.31158 * 12 11 10 43 43 H 1.08995 * 109.47221 * 63.20123 * 15 13 6 44 44 H 1.09003 * 109.47243 * 183.20154 * 15 13 6 45 45 H 1.08998 * 109.47044 * 303.19687 * 15 13 6 46 46 H 1.08002 * 126.91293 * 0.02562 * 17 16 2 47 47 H 1.08996 * 109.46864 * 335.00384 * 19 18 17 48 48 H 1.08997 * 109.46836 * 215.00148 * 19 18 17 49 49 H 0.96996 * 120.00153 * 359.97438 * 20 19 18 50 50 H 0.97003 * 120.00105 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.4992 -1.8259 1.1386 6 7 1.9626 -0.1060 2.4332 7 6 1.3024 1.1986 2.5782 8 1 0.8252 1.4733 1.6376 9 6 2.3384 2.2580 2.9596 10 6 0.2414 1.0889 3.6837 11 6 0.8994 0.5720 4.9650 12 6 1.4805 -0.8217 4.7157 13 6 2.5508 -0.7363 3.6229 14 1 3.3885 -0.1361 3.9781 15 6 3.0372 -2.1434 3.2704 16 7 2.0183 -0.6907 -1.1961 17 6 1.4358 -1.7588 -1.7882 18 6 2.2126 -2.0704 -2.8519 19 6 1.9881 -3.1902 -3.8352 20 7 1.2702 -2.6767 -5.0045 21 6 0.9523 -3.5184 -6.0368 22 1 1.2312 -4.5606 -5.9892 23 6 0.2726 -3.0317 -7.1449 24 7 -0.0668 -1.7614 -7.2032 25 14 -0.1604 -4.1797 -8.5534 26 1 0.9454 -4.1860 -9.5446 27 1 -1.4088 -3.7117 -9.2076 28 1 -0.3621 -5.5538 -8.0280 29 7 3.2223 -1.1929 -2.8550 30 7 3.0751 -0.3854 -1.8646 31 1 -0.3634 0.5866 0.8437 32 1 -0.3633 0.4374 -0.9300 33 1 -0.3634 -1.0241 0.0862 34 1 3.0977 2.3209 2.1800 35 1 1.8466 3.2248 3.0671 36 1 2.8088 1.9830 3.9037 37 1 -0.5417 0.3976 3.3725 38 1 -0.1931 2.0713 3.8687 39 1 0.1550 0.5183 5.7594 40 1 1.6988 1.2509 5.2621 41 1 0.6857 -1.4951 4.3947 42 1 1.9285 -1.1989 5.6350 43 1 3.8296 -2.0777 2.5248 44 1 3.4213 -2.6303 4.1668 45 1 2.2073 -2.7246 2.8685 46 1 0.5323 -2.2611 -1.4756 47 1 1.3983 -3.9757 -3.3628 48 1 2.9497 -3.5965 -4.1488 49 1 1.0194 -1.7406 -5.0471 50 1 0.1577 -1.1653 -6.4716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603180576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:43 Heat of formation + Delta-G solvation = 68.536907 kcal Electronic energy + Delta-G solvation = -30106.175710 eV Core-core repulsion = 26170.819805 eV Total energy + Delta-G solvation = -3935.355905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 10.51 seconds Orbital eigenvalues (eV) -44.44322 -41.99436 -38.97374 -37.33036 -36.63084 -34.51296 -33.98816 -33.81881 -31.77219 -31.54171 -30.00907 -27.64572 -27.46554 -26.27283 -24.93695 -24.71556 -23.82019 -22.73737 -22.34618 -21.59892 -19.89176 -19.44651 -18.51075 -18.17773 -17.24225 -16.93291 -16.87184 -16.48426 -16.00325 -15.79968 -15.76402 -15.32722 -15.08635 -15.03497 -14.87381 -14.59464 -14.47532 -13.98630 -13.90806 -13.75324 -13.56936 -13.33274 -13.01233 -12.94446 -12.82778 -12.76397 -12.71271 -12.57361 -12.48592 -12.07074 -11.96970 -11.85252 -11.83182 -11.56486 -11.46960 -11.33235 -11.30090 -10.97320 -10.39744 -10.17047 -9.70506 -9.15403 -8.41180 -5.35193 0.41464 1.02284 1.29282 1.35583 1.60885 1.72416 1.80933 1.86652 2.73919 3.00421 3.13906 3.36316 3.45263 3.49907 3.63525 3.79444 3.83307 3.85836 3.94500 3.96443 4.06642 4.12807 4.20130 4.34232 4.34742 4.37705 4.46669 4.50996 4.61909 4.64474 4.70837 4.76948 4.85891 4.92390 4.99524 5.00137 5.02581 5.04917 5.07757 5.12199 5.19584 5.26349 5.28039 5.47205 5.51984 5.57575 5.58999 6.17258 6.47032 6.87204 7.04417 7.37045 7.94104 8.08417 9.10677 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.002359 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.086508 B =11867.764421 C =12106.469781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 H 0.153 0.847 4 C 0.507 3.493 5 O -0.553 6.553 6 N -0.587 5.587 7 C 0.113 3.887 8 H 0.109 0.891 9 C -0.166 4.166 10 C -0.127 4.127 11 C -0.120 4.120 12 C -0.126 4.126 13 C 0.143 3.857 14 H 0.083 0.917 15 C -0.132 4.132 16 N -0.269 5.269 17 C -0.003 4.003 18 C -0.040 4.040 19 C 0.244 3.756 20 N -0.748 5.748 21 C -0.335 4.335 22 H 0.074 0.926 23 C -0.105 4.105 24 N -0.974 5.974 25 Si 1.136 2.864 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.268 1.268 29 N -0.292 5.292 30 N -0.107 5.107 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.214 0.786 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.359 0.641 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 9.856 33.901 35.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.170 0.830 4 C 0.292 3.708 5 O -0.431 6.431 6 N -0.321 5.321 7 C 0.011 3.989 8 H 0.127 0.873 9 C -0.224 4.224 10 C -0.165 4.165 11 C -0.157 4.157 12 C -0.164 4.164 13 C 0.041 3.959 14 H 0.101 0.899 15 C -0.189 4.189 16 N -0.063 5.063 17 C -0.154 4.154 18 C -0.178 4.178 19 C 0.116 3.884 20 N -0.393 5.393 21 C -0.465 4.465 22 H 0.091 0.909 23 C -0.296 4.296 24 N -0.622 5.622 25 Si 0.959 3.041 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.193 1.193 29 N -0.159 5.159 30 N -0.085 5.085 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.231 0.769 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.190 0.810 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.424 9.885 32.355 33.861 hybrid contribution 0.317 -0.336 1.348 1.425 sum -1.107 9.550 33.703 35.047 Atomic orbital electron populations 1.22390 0.87006 1.05807 1.06872 1.21997 0.99454 0.98001 0.79325 0.82998 1.20538 0.78995 0.86130 0.85099 1.90877 1.46142 1.20235 1.85843 1.48231 1.56255 1.21350 1.06217 1.22025 0.94068 0.81122 1.01685 0.87306 1.22210 0.98946 0.99034 1.02221 1.22031 0.96725 1.03567 0.94136 1.21572 1.00973 0.95407 0.97793 1.21977 0.97785 0.98780 0.97833 1.21407 0.96053 0.93772 0.84658 0.89886 1.22065 1.01337 0.95780 0.99699 1.47106 1.17158 1.21498 1.20523 1.23487 1.02904 0.93151 0.95889 1.22205 0.94716 1.01237 0.99677 1.18818 0.95132 0.90147 0.84265 1.42495 1.68984 1.08890 1.18902 1.20468 1.33676 0.93458 0.98945 0.90853 1.27371 0.98972 1.00165 1.03070 1.70953 1.51726 1.04891 1.34652 0.82543 0.76128 0.72928 0.72473 1.21389 1.21680 1.19295 1.74983 1.22716 1.04373 1.13865 1.78110 1.05147 1.21875 1.03403 0.85137 0.89406 0.90470 0.93326 0.88798 0.91485 0.91254 0.88010 0.90338 0.90595 0.92329 0.89599 0.94195 0.92142 0.93119 0.76950 0.92550 0.95556 0.80987 0.94853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.37 71.98 0.60 -1.39 16 2 C 0.12 2.27 2.79 44.24 0.12 2.40 16 3 H 0.15 2.28 7.39 -2.39 -0.02 2.26 16 4 C 0.51 10.82 6.93 87.66 0.61 11.42 16 5 O -0.55 -16.89 11.72 -3.04 -0.04 -16.92 16 6 N -0.59 -8.07 2.68 -770.51 -2.06 -10.13 16 7 C 0.11 0.72 2.52 45.12 0.11 0.83 16 8 H 0.11 0.43 4.19 -2.39 -0.01 0.42 16 9 C -0.17 -0.90 9.03 71.98 0.65 -0.25 16 10 C -0.13 -0.42 5.58 30.82 0.17 -0.25 16 11 C -0.12 -0.51 5.68 30.62 0.17 -0.33 16 12 C -0.13 -1.07 5.37 30.68 0.16 -0.90 16 13 C 0.14 1.94 3.07 44.98 0.14 2.07 16 14 H 0.08 0.99 7.48 -2.39 -0.02 0.97 16 15 C -0.13 -2.65 7.59 71.98 0.55 -2.10 16 16 N -0.27 -8.39 2.85 -330.76 -0.94 -9.33 16 17 C 0.00 -0.09 10.42 83.49 0.87 0.78 16 18 C -0.04 -1.72 6.62 41.60 0.28 -1.44 16 19 C 0.24 11.40 6.82 85.64 0.58 11.98 16 20 N -0.75 -41.53 5.59 -347.18 -1.94 -43.47 16 21 C -0.33 -19.86 9.99 84.03 0.84 -19.02 16 22 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.11 -6.36 5.50 84.86 0.47 -5.89 16 24 N -0.97 -63.58 13.70 21.65 0.30 -63.28 16 25 Si 1.14 53.53 29.92 68.60 2.05 55.58 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 N -0.29 -13.31 12.41 -48.59 -0.60 -13.91 16 30 N -0.11 -4.19 13.16 37.02 0.49 -3.70 16 31 H 0.13 0.60 5.88 -2.39 -0.01 0.58 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.04 7.43 -2.39 -0.02 1.02 16 34 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.07 0.36 5.71 -2.39 -0.01 0.35 16 37 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.08 0.24 6.49 -2.39 -0.02 0.23 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.04 1.07 6.68 -2.39 -0.02 1.05 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.05 1.23 6.81 -2.39 -0.02 1.21 16 46 H 0.21 5.76 7.44 -2.91 -0.02 5.73 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.36 20.97 6.49 -92.71 -0.60 20.37 16 50 H 0.24 15.91 6.77 -92.71 -0.63 15.28 16 Total: -1.00 -85.75 385.79 4.07 -81.68 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.49 Total: 25.57 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.33 Total: -2.08 kcal Atomic # 7 Polarization: -139.06 SS G_CDS: -4.77 Total: -143.82 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.04 Total: -16.92 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.05 Total: 55.58 kcal Total: -85.75 4.07 -81.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.217 kcal (2) G-P(sol) polarization free energy of solvation -85.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.51 seconds