Wall clock time and date at job start Tue Mar 31 2020 23:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.08999 * 109.47228 * 325.27715 * 7 6 4 9 9 C 1.52999 * 109.47341 * 85.27876 * 7 6 4 10 10 C 1.53001 * 109.46992 * 59.99623 * 9 7 6 11 11 C 1.53001 * 109.46876 * 60.00448 * 10 9 7 12 12 C 1.52996 * 109.47264 * 299.99762 * 11 10 9 13 13 C 1.53001 * 109.47193 * 205.27836 * 7 6 4 14 14 H 1.09005 * 109.47453 * 179.97438 * 13 7 6 15 15 C 1.53005 * 109.47302 * 60.00110 * 13 7 6 16 16 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 17 17 C 1.35312 * 125.86516 * 35.00372 * 16 2 1 18 18 C 1.35346 * 106.17390 * 180.02562 * 17 16 2 19 19 C 1.50700 * 126.75462 * 179.97438 * 18 17 16 20 20 N 1.46504 * 109.47093 * 94.99704 * 19 18 17 21 21 C 1.36934 * 120.00201 * 180.02562 * 20 19 18 22 22 H 1.08006 * 120.00041 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00103 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99900 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99840 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47180 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46893 * 120.00130 * 25 23 21 28 28 H 1.48498 * 109.47001 * 239.99786 * 25 23 21 29 29 N 1.33773 * 106.49790 * 359.97438 * 18 17 16 30 30 N 1.28632 * 108.88639 * 359.74038 * 29 18 17 31 31 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 32 32 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.47098 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46823 * 300.00095 * 9 7 6 37 37 H 1.08996 * 109.47314 * 300.00650 * 10 9 7 38 38 H 1.08995 * 109.46927 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.46935 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.47453 * 59.99622 * 11 10 9 41 41 H 1.09005 * 109.47296 * 300.00321 * 12 11 10 42 42 H 1.08998 * 109.47864 * 180.02562 * 12 11 10 43 43 H 1.08999 * 109.47167 * 60.00092 * 15 13 7 44 44 H 1.08994 * 109.47455 * 180.02562 * 15 13 7 45 45 H 1.09005 * 109.46645 * 300.00223 * 15 13 7 46 46 H 1.07998 * 126.91065 * 0.02562 * 17 16 2 47 47 H 1.08994 * 109.47712 * 214.99877 * 19 18 17 48 48 H 1.09001 * 109.46828 * 335.00380 * 19 18 17 49 49 H 0.97002 * 120.00047 * 0.02562 * 20 19 18 50 50 H 0.97007 * 119.99548 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 1 3.1987 -1.3294 -3.4584 9 6 1.2579 -2.0906 -4.0013 10 6 -0.1439 -1.5400 -4.2710 11 6 -0.0882 -0.5537 -5.4394 12 6 0.8539 0.5997 -5.0888 13 6 2.2557 0.0491 -4.8189 14 1 2.6232 -0.4620 -5.7088 15 6 3.1979 1.2025 -4.4683 16 7 2.0183 -0.6905 1.1963 17 6 1.4357 -1.7587 1.7885 18 6 2.2124 -2.0701 2.8523 19 6 1.9873 -3.1891 3.8363 20 7 2.7582 -4.3646 3.4237 21 6 2.7097 -5.5117 4.1700 22 1 2.1027 -5.5500 5.0625 23 6 3.4405 -6.6253 3.7793 24 7 4.1798 -6.5788 2.6914 25 14 3.3748 -8.1899 4.7978 26 1 2.4773 -7.9848 5.9630 27 1 2.8548 -9.3025 3.9629 28 1 4.7395 -8.5265 5.2768 29 7 3.2192 -1.1893 2.8584 30 7 3.0784 -0.3891 1.8612 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.1493 0.5388 -2.5436 35 1 1.6253 -2.6021 -4.8909 36 1 1.2183 -2.7932 -3.1689 37 1 -0.5109 -1.0287 -3.3811 38 1 -0.8151 -2.3617 -4.5204 39 1 -1.0870 -0.1618 -5.6319 40 1 0.2789 -1.0649 -6.3294 41 1 0.4869 1.1110 -4.1988 42 1 0.8932 1.3026 -5.9209 43 1 4.1965 0.8103 -4.2761 44 1 3.2372 1.9054 -5.3004 45 1 2.8308 1.7138 -3.5783 46 1 0.5327 -2.2615 1.4752 47 1 2.3110 -2.8719 4.8275 48 1 0.9272 -3.4411 3.8635 49 1 3.3031 -4.3304 2.6219 50 1 4.6902 -7.3572 2.4183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603184744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:33 Heat of formation + Delta-G solvation = 62.364722 kcal Electronic energy + Delta-G solvation = -29705.401127 eV Core-core repulsion = 25769.777576 eV Total energy + Delta-G solvation = -3935.623551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.93005 -40.78263 -38.70089 -35.53594 -34.56866 -34.08733 -32.97940 -31.90346 -30.99257 -29.91489 -29.78925 -26.77322 -26.03969 -25.11069 -23.28087 -22.70709 -22.31235 -21.82120 -20.82670 -20.40080 -19.47423 -18.15554 -17.42798 -16.82487 -15.96941 -15.80292 -15.77497 -15.34140 -14.81537 -14.62741 -14.57143 -14.38945 -13.94648 -13.85413 -13.60072 -13.37792 -13.21639 -13.03162 -12.95704 -12.59951 -12.53188 -12.37849 -12.29566 -12.10587 -11.96147 -11.75667 -11.36047 -11.16058 -11.00017 -10.80645 -10.77348 -10.75267 -10.41723 -10.40499 -10.33753 -9.97178 -9.70709 -9.56864 -9.37077 -8.79130 -8.69263 -6.80627 -5.63053 -2.92917 1.79902 2.23982 2.33018 2.87862 3.06227 3.51818 3.56615 3.59582 4.04008 4.13584 4.22936 4.24694 4.30284 4.35279 4.63203 4.70666 4.74400 4.77267 4.95066 4.95615 4.98879 5.01887 5.08068 5.13882 5.18269 5.34470 5.38238 5.38614 5.42367 5.50845 5.58352 5.61245 5.67749 5.73995 5.74865 5.80108 5.84826 5.89049 5.93998 5.99035 6.18066 6.29711 6.51853 6.76101 6.79322 6.88321 7.09132 7.80264 7.85686 8.53538 8.95511 9.65108 10.22587 10.58587 11.59488 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002645 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.354955 B =10584.390352 C =11530.262665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 H 0.134 0.866 4 C 0.500 3.500 5 O -0.500 6.500 6 N -0.716 5.716 7 C 0.152 3.848 8 H 0.091 0.909 9 C -0.133 4.133 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.115 4.115 13 C -0.099 4.099 14 H 0.086 0.914 15 C -0.149 4.149 16 N -0.285 5.285 17 C -0.029 4.029 18 C -0.005 4.005 19 C 0.234 3.766 20 N -0.726 5.726 21 C -0.238 4.238 22 H 0.073 0.927 23 C -0.014 4.014 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.292 1.292 29 N -0.249 5.249 30 N -0.092 5.092 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.184 0.816 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.387 0.613 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 20.901 -20.323 32.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.152 0.848 4 C 0.283 3.717 5 O -0.372 6.372 6 N -0.371 5.371 7 C 0.048 3.952 8 H 0.109 0.891 9 C -0.172 4.172 10 C -0.155 4.155 11 C -0.159 4.159 12 C -0.152 4.152 13 C -0.118 4.118 14 H 0.104 0.896 15 C -0.206 4.206 16 N -0.079 5.079 17 C -0.179 4.179 18 C -0.142 4.142 19 C 0.105 3.895 20 N -0.371 5.371 21 C -0.369 4.369 22 H 0.091 0.909 23 C -0.211 4.211 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.219 1.219 29 N -0.117 5.117 30 N -0.070 5.070 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.201 0.799 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.221 0.779 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.681 21.010 -19.990 31.264 hybrid contribution -0.937 -1.210 -0.174 1.540 sum -12.617 19.800 -20.164 30.948 Atomic orbital electron populations 1.22165 0.89958 1.05036 1.04770 1.21345 0.97024 0.97864 0.81507 0.84800 1.20513 0.81238 0.85388 0.84584 1.90907 1.35537 1.24760 1.86011 1.45950 1.54031 1.32244 1.04905 1.21003 0.98692 0.92119 0.83387 0.89134 1.21939 0.95213 0.97645 1.02395 1.21496 0.96929 0.98827 0.98266 1.21567 0.99310 0.96427 0.98559 1.21603 0.94399 0.97823 1.01395 1.21440 0.96015 0.96401 0.97925 0.89553 1.21839 0.99474 0.97817 1.01495 1.46727 1.18303 1.22619 1.20263 1.23180 1.03891 0.93411 0.97435 1.22398 0.93053 0.99594 0.99195 1.18925 0.95461 0.82814 0.92323 1.42343 1.55166 1.08510 1.31051 1.19270 1.22974 0.89504 1.05178 0.90884 1.24775 0.99931 0.98327 0.98021 1.69717 1.33403 1.29697 1.24959 0.86100 0.77181 0.83586 0.79221 1.20499 1.21989 1.21903 1.75056 1.20482 1.03660 1.12511 1.78232 1.03331 1.22414 1.03024 0.89365 0.90216 0.89673 0.76635 0.90872 0.90978 0.92040 0.91866 0.91936 0.91801 0.92244 0.91513 0.92288 0.92385 0.92596 0.79899 0.94394 0.94626 0.77936 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.73 37.16 0.32 -0.61 16 2 C 0.13 1.28 3.65 -69.08 -0.25 1.03 16 3 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.50 5.80 7.19 -10.99 -0.08 5.73 16 5 O -0.50 -8.95 16.08 5.55 0.09 -8.86 16 6 N -0.72 -5.28 3.43 -53.81 -0.18 -5.46 16 7 C 0.15 1.22 2.23 -67.93 -0.15 1.07 16 8 H 0.09 0.99 7.57 -51.93 -0.39 0.60 16 9 C -0.13 -1.10 5.61 -26.73 -0.15 -1.25 16 10 C -0.12 -0.72 5.77 -26.73 -0.15 -0.87 16 11 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 12 C -0.11 -0.46 5.03 -26.73 -0.13 -0.60 16 13 C -0.10 -0.54 2.51 -90.62 -0.23 -0.76 16 14 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 15 C -0.15 -0.82 9.04 37.16 0.34 -0.48 16 16 N -0.29 -4.45 2.75 -55.89 -0.15 -4.61 16 17 C -0.03 -0.49 10.60 -17.05 -0.18 -0.67 16 18 C -0.01 -0.11 6.61 -82.78 -0.55 -0.65 16 19 C 0.23 5.26 6.82 -5.19 -0.04 5.22 16 20 N -0.73 -20.26 5.59 -61.08 -0.34 -20.60 16 21 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 22 H 0.07 2.05 7.83 -52.48 -0.41 1.63 16 23 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -30.07 13.06 55.49 0.72 -29.34 16 25 Si 0.91 23.34 29.55 -169.99 -5.02 18.31 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 29 N -0.25 -5.52 12.41 33.29 0.41 -5.10 16 30 N -0.09 -1.78 13.17 60.35 0.79 -0.98 16 31 H 0.09 0.22 7.56 -51.93 -0.39 -0.17 16 32 H 0.08 0.54 7.17 -51.93 -0.37 0.16 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.40 1.68 6.07 -40.82 -0.25 1.43 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.35 7.60 -51.93 -0.39 -0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.19 6.51 -51.93 -0.34 -0.15 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.05 0.29 7.45 -51.93 -0.39 -0.10 16 46 H 0.18 2.52 7.30 -52.49 -0.38 2.13 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.39 11.84 7.66 -40.82 -0.31 11.53 16 50 H 0.25 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -39.26 399.44 -7.58 -46.84 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.26 Total: 5.08 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.66 Total: -1.30 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: 1.25 Total: -66.10 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.26 -7.58 -46.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.207 kcal (2) G-P(sol) polarization free energy of solvation -39.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds