Wall clock time and date at job start Tue Mar 31 2020 23:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.08999 * 109.47228 * 325.27715 * 7 6 4 9 9 C 1.52999 * 109.47341 * 85.27876 * 7 6 4 10 10 C 1.53001 * 109.46992 * 59.99623 * 9 7 6 11 11 C 1.53001 * 109.46876 * 60.00448 * 10 9 7 12 12 C 1.52996 * 109.47264 * 299.99762 * 11 10 9 13 13 C 1.53001 * 109.47193 * 205.27836 * 7 6 4 14 14 H 1.09005 * 109.47453 * 179.97438 * 13 7 6 15 15 C 1.53005 * 109.47302 * 60.00110 * 13 7 6 16 16 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 17 17 C 1.35312 * 125.86516 * 35.00372 * 16 2 1 18 18 C 1.35346 * 106.17390 * 180.02562 * 17 16 2 19 19 C 1.50700 * 126.75462 * 179.97438 * 18 17 16 20 20 N 1.46504 * 109.47093 * 94.99704 * 19 18 17 21 21 C 1.36934 * 120.00201 * 180.02562 * 20 19 18 22 22 H 1.08006 * 120.00041 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00103 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99900 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99840 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47180 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46893 * 120.00130 * 25 23 21 28 28 H 1.48498 * 109.47001 * 239.99786 * 25 23 21 29 29 N 1.33773 * 106.49790 * 359.97438 * 18 17 16 30 30 N 1.28632 * 108.88639 * 359.74038 * 29 18 17 31 31 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 32 32 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.08996 * 109.47098 * 180.02562 * 9 7 6 36 36 H 1.09001 * 109.46823 * 300.00095 * 9 7 6 37 37 H 1.08996 * 109.47314 * 300.00650 * 10 9 7 38 38 H 1.08995 * 109.46927 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.46935 * 179.97438 * 11 10 9 40 40 H 1.09005 * 109.47453 * 59.99622 * 11 10 9 41 41 H 1.09005 * 109.47296 * 300.00321 * 12 11 10 42 42 H 1.08998 * 109.47864 * 180.02562 * 12 11 10 43 43 H 1.08999 * 109.47167 * 60.00092 * 15 13 7 44 44 H 1.08994 * 109.47455 * 180.02562 * 15 13 7 45 45 H 1.09005 * 109.46645 * 300.00223 * 15 13 7 46 46 H 1.07998 * 126.91065 * 0.02562 * 17 16 2 47 47 H 1.08994 * 109.47712 * 214.99877 * 19 18 17 48 48 H 1.09001 * 109.46828 * 335.00380 * 19 18 17 49 49 H 0.97002 * 120.00047 * 0.02562 * 20 19 18 50 50 H 0.97007 * 119.99548 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 1 3.1987 -1.3294 -3.4584 9 6 1.2579 -2.0906 -4.0013 10 6 -0.1439 -1.5400 -4.2710 11 6 -0.0882 -0.5537 -5.4394 12 6 0.8539 0.5997 -5.0888 13 6 2.2557 0.0491 -4.8189 14 1 2.6232 -0.4620 -5.7088 15 6 3.1979 1.2025 -4.4683 16 7 2.0183 -0.6905 1.1963 17 6 1.4357 -1.7587 1.7885 18 6 2.2124 -2.0701 2.8523 19 6 1.9873 -3.1891 3.8363 20 7 2.7582 -4.3646 3.4237 21 6 2.7097 -5.5117 4.1700 22 1 2.1027 -5.5500 5.0625 23 6 3.4405 -6.6253 3.7793 24 7 4.1798 -6.5788 2.6914 25 14 3.3748 -8.1899 4.7978 26 1 2.4773 -7.9848 5.9630 27 1 2.8548 -9.3025 3.9629 28 1 4.7395 -8.5265 5.2768 29 7 3.2192 -1.1893 2.8584 30 7 3.0784 -0.3891 1.8612 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.1493 0.5388 -2.5436 35 1 1.6253 -2.6021 -4.8909 36 1 1.2183 -2.7932 -3.1689 37 1 -0.5109 -1.0287 -3.3811 38 1 -0.8151 -2.3617 -4.5204 39 1 -1.0870 -0.1618 -5.6319 40 1 0.2789 -1.0649 -6.3294 41 1 0.4869 1.1110 -4.1988 42 1 0.8932 1.3026 -5.9209 43 1 4.1965 0.8103 -4.2761 44 1 3.2372 1.9054 -5.3004 45 1 2.8308 1.7138 -3.5783 46 1 0.5327 -2.2615 1.4752 47 1 2.3110 -2.8719 4.8275 48 1 0.9272 -3.4411 3.8635 49 1 3.3031 -4.3304 2.6219 50 1 4.6902 -7.3572 2.4183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603184744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:32 Heat of formation + Delta-G solvation = 33.683153 kcal Electronic energy + Delta-G solvation = -29706.644853 eV Core-core repulsion = 25769.777576 eV Total energy + Delta-G solvation = -3936.867277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.31709 -41.59609 -39.47717 -36.99640 -36.18847 -34.90554 -33.79475 -33.49548 -32.00962 -31.64962 -30.57461 -27.80008 -27.25146 -26.12755 -24.76146 -24.10286 -23.15407 -22.37553 -22.30516 -21.43776 -20.13063 -19.38389 -19.07021 -18.17725 -17.03730 -16.76037 -16.65873 -16.47785 -16.07085 -15.92870 -15.55013 -15.35425 -15.25840 -14.98841 -14.73413 -14.45015 -14.31339 -13.88557 -13.79397 -13.70554 -13.47623 -13.18816 -13.10328 -12.89604 -12.81751 -12.76899 -12.63990 -12.53928 -12.44875 -12.04181 -11.90582 -11.83994 -11.83565 -11.60904 -11.41274 -11.28722 -10.98710 -10.95568 -10.78709 -10.20139 -10.16823 -9.03816 -7.93200 -5.25153 0.49788 1.23744 1.33569 1.44436 1.49845 1.50822 1.61106 2.02619 2.58794 3.25934 3.36268 3.40719 3.55700 3.63570 3.65469 3.77969 3.80628 3.95978 4.15232 4.16549 4.19717 4.21209 4.45335 4.47154 4.50578 4.52207 4.53876 4.63336 4.64623 4.67893 4.81745 4.83301 4.93994 5.02545 5.04125 5.11660 5.12280 5.17699 5.18105 5.27006 5.29650 5.35686 5.40576 5.46644 5.49460 5.55392 5.59711 6.25030 6.34701 7.05338 7.30801 7.48418 8.02333 8.29040 9.31162 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.002645 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.354955 B =10584.390352 C =11530.262665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.120 3.880 3 H 0.166 0.834 4 C 0.501 3.499 5 O -0.574 6.574 6 N -0.688 5.688 7 C 0.152 3.848 8 H 0.052 0.948 9 C -0.132 4.132 10 C -0.113 4.113 11 C -0.117 4.117 12 C -0.111 4.111 13 C -0.091 4.091 14 H 0.087 0.913 15 C -0.149 4.149 16 N -0.270 5.270 17 C -0.009 4.009 18 C -0.038 4.038 19 C 0.236 3.764 20 N -0.742 5.742 21 C -0.242 4.242 22 H 0.089 0.911 23 C -0.084 4.084 24 N -0.976 5.976 25 Si 0.983 3.017 26 H -0.258 1.258 27 H -0.292 1.292 28 H -0.296 1.296 29 N -0.295 5.295 30 N -0.107 5.107 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.419 0.581 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.217 0.783 47 H 0.033 0.967 48 H 0.064 0.936 49 H 0.367 0.633 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.650 23.042 -21.371 35.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.183 0.817 4 C 0.285 3.715 5 O -0.452 6.452 6 N -0.343 5.343 7 C 0.047 3.953 8 H 0.070 0.930 9 C -0.170 4.170 10 C -0.151 4.151 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.110 4.110 14 H 0.105 0.895 15 C -0.206 4.206 16 N -0.064 5.064 17 C -0.161 4.161 18 C -0.176 4.176 19 C 0.109 3.891 20 N -0.384 5.384 21 C -0.373 4.373 22 H 0.106 0.894 23 C -0.275 4.275 24 N -0.627 5.627 25 Si 0.812 3.188 26 H -0.181 1.181 27 H -0.219 1.219 28 H -0.224 1.224 29 N -0.162 5.162 30 N -0.086 5.086 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.259 0.741 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.233 0.767 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.198 0.802 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.028 23.257 -21.052 34.784 hybrid contribution 0.043 -1.758 0.018 1.758 sum -14.986 21.499 -21.033 33.603 Atomic orbital electron populations 1.22308 0.86034 1.05507 1.07571 1.22031 0.99925 0.98196 0.78352 0.81696 1.20860 0.80163 0.84433 0.86011 1.90899 1.39078 1.28157 1.87022 1.45732 1.52881 1.32124 1.03557 1.20971 0.96740 0.93095 0.84471 0.92991 1.21891 0.97156 0.97077 1.00902 1.21485 0.94797 0.99289 0.99532 1.21548 1.00336 0.96076 0.97513 1.21613 0.92612 0.97792 1.02781 1.21392 0.97570 0.95631 0.96359 0.89517 1.21846 0.98331 0.97963 1.02476 1.47133 1.16660 1.21883 1.20704 1.23530 1.03932 0.92907 0.95724 1.22275 0.94429 1.00019 1.00866 1.18988 0.95897 0.81753 0.92509 1.42587 1.55606 1.09925 1.30294 1.19784 1.22184 0.90040 1.05302 0.89365 1.25753 1.00097 1.02165 0.99481 1.69919 1.34992 1.30522 1.27280 0.84925 0.77073 0.78793 0.78048 1.18137 1.21879 1.22371 1.74973 1.21897 1.04974 1.14348 1.78083 1.04777 1.22562 1.03167 0.85052 0.90898 0.88367 0.74143 0.90841 0.94728 0.91110 0.92161 0.90371 0.92075 0.90624 0.89978 0.94369 0.90770 0.91923 0.76690 0.94915 0.91814 0.80191 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.73 71.98 0.63 -0.55 16 2 C 0.12 2.10 3.65 44.24 0.16 2.26 16 3 H 0.17 1.88 8.14 -2.39 -0.02 1.87 16 4 C 0.50 11.36 7.19 87.66 0.63 11.99 16 5 O -0.57 -21.61 16.08 -3.04 -0.05 -21.66 16 6 N -0.69 -9.07 3.43 -442.54 -1.52 -10.59 16 7 C 0.15 2.43 2.23 44.99 0.10 2.53 16 8 H 0.05 1.26 7.57 -2.39 -0.02 1.24 16 9 C -0.13 -2.21 5.61 30.59 0.17 -2.04 16 10 C -0.11 -1.16 5.77 30.59 0.18 -0.99 16 11 C -0.12 -0.71 5.92 30.59 0.18 -0.53 16 12 C -0.11 -0.48 5.03 30.59 0.15 -0.32 16 13 C -0.09 -0.83 2.51 -10.79 -0.03 -0.86 16 14 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 15 C -0.15 -1.37 9.04 71.98 0.65 -0.72 16 16 N -0.27 -8.24 2.75 -330.73 -0.91 -9.14 16 17 C -0.01 -0.31 10.60 83.49 0.89 0.57 16 18 C -0.04 -1.60 6.61 41.60 0.28 -1.32 16 19 C 0.24 10.73 6.82 85.63 0.58 11.31 16 20 N -0.74 -42.45 5.59 -347.17 -1.94 -44.39 16 21 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 22 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 23 C -0.08 -5.13 5.50 84.86 0.47 -4.67 16 24 N -0.98 -65.28 13.06 21.65 0.28 -65.00 16 25 Si 0.98 48.62 29.55 68.60 2.03 50.65 16 26 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 29 N -0.29 -13.46 12.41 -48.60 -0.60 -14.07 16 30 N -0.11 -4.23 13.17 37.02 0.49 -3.74 16 31 H 0.13 -0.11 7.56 -2.39 -0.02 -0.13 16 32 H 0.07 0.72 7.17 -2.39 -0.02 0.70 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.42 1.94 6.07 -92.71 -0.56 1.38 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.59 7.60 -2.39 -0.02 0.57 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.08 0.10 6.51 -2.38 -0.02 0.08 16 42 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 45 H 0.06 0.48 7.45 -2.38 -0.02 0.46 16 46 H 0.22 5.51 7.30 -2.91 -0.02 5.48 16 47 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 48 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.37 23.51 7.66 -92.71 -0.71 22.80 16 50 H 0.25 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -92.23 399.44 3.33 -88.90 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.32 Total: 25.93 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.88 Total: 3.11 kcal Atomic # 7 Polarization: -142.72 SS G_CDS: -4.20 Total: -146.92 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -92.23 3.33 -88.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.578 kcal (2) G-P(sol) polarization free energy of solvation -92.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds