Wall clock time and date at job start Tue Mar 31 2020 23:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09007 * 109.47747 * 35.00142 * 7 6 4 9 9 C 1.53001 * 109.47313 * 274.99614 * 7 6 4 10 10 C 1.52998 * 109.47229 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47099 * 59.99781 * 10 9 7 12 12 C 1.52999 * 109.47579 * 300.00018 * 11 10 9 13 13 C 1.52998 * 109.46921 * 59.99872 * 12 11 10 14 14 H 1.09002 * 109.47122 * 60.00484 * 13 12 11 15 15 C 1.53001 * 109.47229 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46846 * 240.00528 * 2 1 3 17 17 C 1.35320 * 125.86883 * 324.99808 * 16 2 1 18 18 C 1.35348 * 106.17217 * 180.02562 * 17 16 2 19 19 C 1.50701 * 126.74925 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47441 * 94.99809 * 19 18 17 21 21 C 1.36938 * 120.00350 * 180.02562 * 20 19 18 22 22 H 1.08000 * 119.99762 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00137 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99929 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99704 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47091 * 120.00211 * 25 23 21 28 28 H 1.48500 * 109.46824 * 239.99699 * 25 23 21 29 29 N 1.33767 * 106.50119 * 0.02562 * 18 17 16 30 30 N 1.28634 * 108.88469 * 359.73648 * 29 18 17 31 31 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 33 33 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 34 34 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 35 35 H 1.09002 * 109.46839 * 300.00218 * 9 7 6 36 36 H 1.08998 * 109.46617 * 60.00312 * 9 7 6 37 37 H 1.09002 * 109.47122 * 299.99718 * 10 9 7 38 38 H 1.09001 * 109.47069 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.46911 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46702 * 60.00552 * 11 10 9 41 41 H 1.09002 * 109.46828 * 300.00177 * 12 11 10 42 42 H 1.08998 * 109.46936 * 179.97438 * 12 11 10 43 43 H 1.08990 * 109.47355 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.47065 * 300.00198 * 15 13 12 45 45 H 1.09001 * 109.46721 * 59.99569 * 15 13 12 46 46 H 1.07995 * 126.91049 * 359.97438 * 17 16 2 47 47 H 1.09001 * 109.47299 * 214.99831 * 19 18 17 48 48 H 1.09003 * 109.46849 * 334.99713 * 19 18 17 49 49 H 0.97004 * 119.99961 * 359.97438 * 20 19 18 50 50 H 0.97002 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 1 3.1853 -1.3397 3.4640 9 6 1.2396 -2.1021 3.9875 10 6 1.7441 -2.8267 5.2370 11 6 1.7911 -1.8466 6.4109 12 6 2.7369 -0.6922 6.0741 13 6 2.2324 0.0325 4.8246 14 1 1.2326 0.4246 5.0108 15 6 3.1787 1.1865 4.4873 16 7 2.0182 -0.6905 -1.1962 17 6 1.4356 -1.7586 -1.7885 18 6 2.2129 -2.0707 -2.8516 19 6 1.9886 -3.1906 -3.8348 20 7 1.2715 -2.6773 -5.0046 21 6 0.9539 -3.5192 -6.0368 22 1 1.2325 -4.5615 -5.9888 23 6 0.2749 -3.0326 -7.1455 24 7 -0.0641 -1.7622 -7.2043 25 14 -0.1576 -4.1809 -8.5539 26 1 0.3319 -5.5486 -8.2457 27 1 -1.6314 -4.2108 -8.7334 28 1 0.4833 -3.6959 -9.8026 29 7 3.2200 -1.1904 -2.8574 30 7 3.0729 -0.3829 -1.8670 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.1445 0.5353 2.5435 35 1 0.2398 -1.7099 4.1741 36 1 1.2059 -2.8000 3.1509 37 1 2.7440 -3.2188 5.0507 38 1 1.0700 -3.6489 5.4772 39 1 2.1501 -2.3630 7.3012 40 1 0.7912 -1.4547 6.5971 41 1 3.7368 -1.0843 5.8878 42 1 2.7700 0.0062 6.9103 43 1 2.8195 1.7025 3.5970 44 1 3.2125 1.8849 5.3236 45 1 4.1784 0.7941 4.3011 46 1 0.5326 -2.2614 -1.4753 47 1 2.9502 -3.5974 -4.1478 48 1 1.3984 -3.9759 -3.3625 49 1 1.0210 -1.7412 -5.0476 50 1 -0.5389 -1.4223 -7.9788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603184746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:12 Heat of formation + Delta-G solvation = 57.531799 kcal Electronic energy + Delta-G solvation = -29102.617373 eV Core-core repulsion = 25166.784251 eV Total energy + Delta-G solvation = -3935.833122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 8.07 seconds Orbital eigenvalues (eV) -42.93709 -40.68392 -38.81467 -35.56305 -34.80192 -34.49036 -32.99806 -31.93132 -30.96034 -29.85443 -29.66802 -26.84702 -26.05124 -25.12382 -23.44008 -22.73859 -22.01452 -21.61898 -20.81035 -20.71659 -20.04113 -18.05735 -17.46110 -17.03571 -16.34607 -15.72113 -15.65066 -15.08422 -14.97246 -14.69370 -14.56580 -14.42332 -14.16780 -13.91364 -13.62245 -13.43240 -13.24649 -13.05131 -12.96974 -12.82313 -12.55663 -12.42775 -12.30166 -12.08018 -11.76913 -11.70654 -11.41450 -11.17130 -11.07459 -10.99032 -10.84885 -10.78021 -10.70743 -10.46410 -10.31749 -10.00342 -9.75059 -9.59602 -9.49180 -8.82789 -8.70181 -6.85133 -5.68747 -2.97646 1.79946 2.11438 2.26214 2.82007 3.05088 3.49087 3.54749 3.57208 3.97487 4.06497 4.16405 4.19438 4.32931 4.37222 4.57443 4.67317 4.67483 4.77822 4.88358 4.90256 4.94589 4.97146 4.98529 5.12186 5.18494 5.22398 5.37143 5.37933 5.48851 5.49617 5.53262 5.58330 5.60267 5.63453 5.69172 5.72285 5.76446 5.83176 5.91128 5.93141 6.05143 6.25191 6.51293 6.76457 6.77476 6.87623 6.99598 7.71662 7.77366 8.48795 8.94964 9.60586 10.17108 10.53601 11.54245 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.002066 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.261626 B =13548.991017 C =13925.098080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 H 0.136 0.864 4 C 0.507 3.493 5 O -0.510 6.510 6 N -0.720 5.720 7 C 0.151 3.849 8 H 0.090 0.910 9 C -0.130 4.130 10 C -0.118 4.118 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.097 4.097 14 H 0.076 0.924 15 C -0.150 4.150 16 N -0.285 5.285 17 C -0.029 4.029 18 C -0.005 4.005 19 C 0.233 3.767 20 N -0.726 5.726 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.292 1.292 29 N -0.249 5.249 30 N -0.092 5.092 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.184 0.816 47 H 0.039 0.961 48 H 0.037 0.963 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 6.797 33.462 34.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.154 0.846 4 C 0.290 3.710 5 O -0.384 6.384 6 N -0.373 5.373 7 C 0.047 3.953 8 H 0.108 0.892 9 C -0.169 4.169 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.116 4.116 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.079 5.079 17 C -0.179 4.179 18 C -0.142 4.142 19 C 0.104 3.896 20 N -0.371 5.371 21 C -0.367 4.367 22 H 0.092 0.908 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.219 1.219 29 N -0.117 5.117 30 N -0.070 5.070 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.201 0.799 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.218 6.871 33.158 33.884 hybrid contribution -1.611 -0.443 -0.556 1.761 sum -0.394 6.428 32.603 33.233 Atomic orbital electron populations 1.22189 0.89710 1.05074 1.05103 1.21349 0.97224 0.97950 0.81212 0.84648 1.20526 0.80783 0.85135 0.84571 1.90824 1.36139 1.25207 1.86207 1.45948 1.54124 1.32203 1.05035 1.21074 0.99034 0.92075 0.83091 0.89239 1.21929 0.98975 0.97511 0.98460 1.21498 1.01884 0.97960 0.94248 1.21578 0.99858 0.96414 0.98081 1.21563 0.99516 0.97309 0.96584 1.21409 1.00347 0.95438 0.94440 0.90547 1.21852 0.99660 0.97654 1.01531 1.46711 1.18793 1.22309 1.20107 1.23185 1.03056 0.93814 0.97835 1.22378 0.93147 1.00551 0.98104 1.18938 0.96266 0.89025 0.85361 1.42321 1.67492 1.10425 1.16814 1.19296 1.29548 0.92104 0.95748 0.90838 1.24757 1.01593 0.96177 0.98601 1.69693 1.45371 1.12636 1.30449 0.86082 0.77600 0.79802 0.82510 1.20478 1.21980 1.21908 1.75059 1.21367 1.03151 1.12116 1.78239 1.03767 1.21885 1.03110 0.90293 0.89296 0.89312 0.76463 0.91665 0.91217 0.91658 0.91562 0.91739 0.91870 0.91553 0.91380 0.92463 0.92300 0.92396 0.79875 0.94278 0.94493 0.78126 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.73 37.16 0.32 -0.75 16 2 C 0.13 1.28 3.65 -69.08 -0.25 1.03 16 3 H 0.14 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.51 5.29 7.19 -10.98 -0.08 5.21 16 5 O -0.51 -7.96 16.08 5.55 0.09 -7.87 16 6 N -0.72 -4.58 4.27 -53.80 -0.23 -4.81 16 7 C 0.15 1.02 1.90 -67.93 -0.13 0.89 16 8 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 9 C -0.13 -0.87 5.49 -26.73 -0.15 -1.02 16 10 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 11 C -0.12 -0.55 5.92 -26.73 -0.16 -0.71 16 12 C -0.11 -0.49 5.20 -26.73 -0.14 -0.63 16 13 C -0.10 -0.44 2.30 -90.62 -0.21 -0.65 16 14 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 15 C -0.15 -0.70 9.03 37.16 0.34 -0.36 16 16 N -0.29 -4.47 2.75 -55.89 -0.15 -4.62 16 17 C -0.03 -0.49 10.60 -17.04 -0.18 -0.67 16 18 C 0.00 -0.09 6.61 -82.78 -0.55 -0.64 16 19 C 0.23 5.24 6.82 -5.20 -0.04 5.21 16 20 N -0.73 -19.64 5.59 -61.09 -0.34 -19.98 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 24 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 25 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 N -0.25 -5.52 12.41 33.29 0.41 -5.11 16 30 N -0.09 -1.78 13.17 60.35 0.79 -0.98 16 31 H 0.08 0.57 7.17 -51.93 -0.37 0.19 16 32 H 0.09 0.26 7.55 -51.93 -0.39 -0.13 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 1.28 7.79 -40.82 -0.32 0.96 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.25 7.44 -51.93 -0.39 -0.13 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.18 2.52 7.30 -52.49 -0.38 2.14 16 47 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.39 11.15 7.66 -40.82 -0.31 10.84 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -37.94 403.84 -7.71 -45.65 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.45 Total: 3.63 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.62 Total: -1.49 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 1.21 Total: -63.93 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.94 -7.71 -45.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.184 kcal (2) G-P(sol) polarization free energy of solvation -37.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.08 seconds