Wall clock time and date at job start Tue Mar 31 2020 23:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 H 1.09007 * 109.47747 * 35.00142 * 7 6 4 9 9 C 1.53001 * 109.47313 * 274.99614 * 7 6 4 10 10 C 1.52998 * 109.47229 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47099 * 59.99781 * 10 9 7 12 12 C 1.52999 * 109.47579 * 300.00018 * 11 10 9 13 13 C 1.52998 * 109.46921 * 59.99872 * 12 11 10 14 14 H 1.09002 * 109.47122 * 60.00484 * 13 12 11 15 15 C 1.53001 * 109.47229 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.46846 * 240.00528 * 2 1 3 17 17 C 1.35320 * 125.86883 * 324.99808 * 16 2 1 18 18 C 1.35348 * 106.17217 * 180.02562 * 17 16 2 19 19 C 1.50701 * 126.74925 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47441 * 94.99809 * 19 18 17 21 21 C 1.36938 * 120.00350 * 180.02562 * 20 19 18 22 22 H 1.08000 * 119.99762 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00137 * 180.02562 * 21 20 19 24 24 N 1.31614 * 119.99929 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99704 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47091 * 120.00211 * 25 23 21 28 28 H 1.48500 * 109.46824 * 239.99699 * 25 23 21 29 29 N 1.33767 * 106.50119 * 0.02562 * 18 17 16 30 30 N 1.28634 * 108.88469 * 359.73648 * 29 18 17 31 31 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 33 33 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 34 34 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 35 35 H 1.09002 * 109.46839 * 300.00218 * 9 7 6 36 36 H 1.08998 * 109.46617 * 60.00312 * 9 7 6 37 37 H 1.09002 * 109.47122 * 299.99718 * 10 9 7 38 38 H 1.09001 * 109.47069 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.46911 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.46702 * 60.00552 * 11 10 9 41 41 H 1.09002 * 109.46828 * 300.00177 * 12 11 10 42 42 H 1.08998 * 109.46936 * 179.97438 * 12 11 10 43 43 H 1.08990 * 109.47355 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.47065 * 300.00198 * 15 13 12 45 45 H 1.09001 * 109.46721 * 59.99569 * 15 13 12 46 46 H 1.07995 * 126.91049 * 359.97438 * 17 16 2 47 47 H 1.09001 * 109.47299 * 214.99831 * 19 18 17 48 48 H 1.09003 * 109.46849 * 334.99713 * 19 18 17 49 49 H 0.97004 * 119.99961 * 359.97438 * 20 19 18 50 50 H 0.97002 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 1 3.1853 -1.3397 3.4640 9 6 1.2396 -2.1021 3.9875 10 6 1.7441 -2.8267 5.2370 11 6 1.7911 -1.8466 6.4109 12 6 2.7369 -0.6922 6.0741 13 6 2.2324 0.0325 4.8246 14 1 1.2326 0.4246 5.0108 15 6 3.1787 1.1865 4.4873 16 7 2.0182 -0.6905 -1.1962 17 6 1.4356 -1.7586 -1.7885 18 6 2.2129 -2.0707 -2.8516 19 6 1.9886 -3.1906 -3.8348 20 7 1.2715 -2.6773 -5.0046 21 6 0.9539 -3.5192 -6.0368 22 1 1.2325 -4.5615 -5.9888 23 6 0.2749 -3.0326 -7.1455 24 7 -0.0641 -1.7622 -7.2043 25 14 -0.1576 -4.1809 -8.5539 26 1 0.3319 -5.5486 -8.2457 27 1 -1.6314 -4.2108 -8.7334 28 1 0.4833 -3.6959 -9.8026 29 7 3.2200 -1.1904 -2.8574 30 7 3.0729 -0.3829 -1.8670 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.1445 0.5353 2.5435 35 1 0.2398 -1.7099 4.1741 36 1 1.2059 -2.8000 3.1509 37 1 2.7440 -3.2188 5.0507 38 1 1.0700 -3.6489 5.4772 39 1 2.1501 -2.3630 7.3012 40 1 0.7912 -1.4547 6.5971 41 1 3.7368 -1.0843 5.8878 42 1 2.7700 0.0062 6.9103 43 1 2.8195 1.7025 3.5970 44 1 3.2125 1.8849 5.3236 45 1 4.1784 0.7941 4.3011 46 1 0.5326 -2.2614 -1.4753 47 1 2.9502 -3.5974 -4.1478 48 1 1.3984 -3.9759 -3.3625 49 1 1.0210 -1.7412 -5.0476 50 1 -0.5389 -1.4223 -7.9788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603184746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:45 Heat of formation + Delta-G solvation = 30.261694 kcal Electronic energy + Delta-G solvation = -29103.799894 eV Core-core repulsion = 25166.784251 eV Total energy + Delta-G solvation = -3937.015643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 17.90 seconds Orbital eigenvalues (eV) -44.32771 -41.43519 -39.45705 -37.00451 -36.19129 -35.41262 -33.79929 -33.44147 -32.01984 -31.64304 -30.28771 -27.80084 -27.27080 -26.12505 -24.75308 -24.22522 -22.83060 -22.33597 -22.14876 -21.46745 -20.76972 -19.40342 -18.82133 -18.32811 -17.19423 -16.92031 -16.55700 -16.47299 -15.95588 -15.73416 -15.47982 -15.39581 -15.19037 -15.01888 -14.80314 -14.51944 -14.34073 -13.95316 -13.77289 -13.73405 -13.48735 -13.35833 -13.08998 -12.86660 -12.80494 -12.77681 -12.56193 -12.51016 -12.19229 -12.03931 -11.95754 -11.83323 -11.81737 -11.66497 -11.46568 -11.37401 -11.19195 -10.97785 -10.73679 -10.20924 -10.16154 -9.02492 -7.92998 -5.23651 0.51460 1.18676 1.30446 1.45116 1.50864 1.52314 1.62534 2.00981 2.59623 3.23616 3.34492 3.40104 3.54238 3.60850 3.65158 3.74733 3.91717 3.94514 4.13919 4.14898 4.21349 4.22032 4.41023 4.45915 4.46494 4.50919 4.52454 4.53684 4.62008 4.75933 4.81195 4.82277 4.98456 5.01930 5.04961 5.07783 5.11340 5.14598 5.16111 5.22796 5.26744 5.34895 5.38765 5.40463 5.51240 5.54968 5.59106 6.26587 6.33615 7.01689 7.33427 7.47330 8.03266 8.31200 9.31120 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024988 B = 0.002066 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.261626 B =13548.991017 C =13925.098080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.162 0.838 4 C 0.510 3.490 5 O -0.570 6.570 6 N -0.695 5.695 7 C 0.152 3.848 8 H 0.055 0.945 9 C -0.125 4.125 10 C -0.119 4.119 11 C -0.117 4.117 12 C -0.112 4.112 13 C -0.088 4.088 14 H 0.100 0.900 15 C -0.150 4.150 16 N -0.270 5.270 17 C -0.010 4.010 18 C -0.037 4.037 19 C 0.237 3.763 20 N -0.737 5.737 21 C -0.244 4.244 22 H 0.083 0.917 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.981 3.019 26 H -0.263 1.263 27 H -0.289 1.289 28 H -0.296 1.296 29 N -0.295 5.295 30 N -0.107 5.107 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.421 0.579 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.372 0.628 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 7.517 35.866 36.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 H 0.179 0.821 4 C 0.294 3.706 5 O -0.448 6.448 6 N -0.348 5.348 7 C 0.048 3.952 8 H 0.073 0.927 9 C -0.164 4.164 10 C -0.157 4.157 11 C -0.154 4.154 12 C -0.150 4.150 13 C -0.107 4.107 14 H 0.119 0.881 15 C -0.208 4.208 16 N -0.064 5.064 17 C -0.161 4.161 18 C -0.175 4.175 19 C 0.109 3.891 20 N -0.380 5.380 21 C -0.375 4.375 22 H 0.101 0.899 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.809 3.191 26 H -0.187 1.187 27 H -0.216 1.216 28 H -0.224 1.224 29 N -0.162 5.162 30 N -0.086 5.086 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.103 0.897 34 H 0.260 0.740 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.234 0.766 47 H 0.045 0.955 48 H 0.077 0.923 49 H 0.203 0.797 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.911 7.623 35.643 36.460 hybrid contribution -0.922 -0.625 -1.107 1.571 sum -1.834 6.998 34.536 35.285 Atomic orbital electron populations 1.22306 0.86565 1.05559 1.07201 1.22000 0.99562 0.98360 0.78711 0.82072 1.20601 0.80012 0.84321 0.85631 1.90818 1.39026 1.27934 1.86994 1.45760 1.53064 1.32212 1.03722 1.21077 0.97382 0.92961 0.83818 0.92654 1.21874 0.99954 0.96861 0.97698 1.21505 1.00949 0.98555 0.94695 1.21552 1.00599 0.95961 0.97323 1.21583 0.98811 0.97620 0.97023 1.21380 1.01583 0.94599 0.93109 0.88136 1.21867 0.98665 0.97876 1.02358 1.47124 1.17190 1.21525 1.20585 1.23537 1.02990 0.93368 0.96226 1.22243 0.94556 1.01113 0.99580 1.18925 0.95343 0.90185 0.84601 1.42489 1.67871 1.09645 1.17949 1.19734 1.28729 0.92755 0.96289 0.89907 1.25660 1.02134 0.97814 1.01402 1.69862 1.46597 1.14603 1.31163 0.84966 0.77124 0.78403 0.78585 1.18731 1.21629 1.22353 1.74976 1.22920 1.04397 1.13907 1.78093 1.05289 1.21909 1.03283 0.90611 0.84690 0.89687 0.74009 0.89627 0.94159 0.93387 0.91200 0.91294 0.90499 0.92970 0.89844 0.91961 0.90944 0.94317 0.76630 0.95462 0.92297 0.79683 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.73 71.98 0.63 -0.91 16 2 C 0.12 2.09 3.65 44.24 0.16 2.25 16 3 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.51 10.04 7.19 87.66 0.63 10.68 16 5 O -0.57 -18.11 16.08 -3.04 -0.05 -18.16 16 6 N -0.69 -7.29 4.27 -442.52 -1.89 -9.18 16 7 C 0.15 1.87 1.90 44.99 0.09 1.95 16 8 H 0.06 1.10 7.58 -2.38 -0.02 1.09 16 9 C -0.13 -1.54 5.49 30.59 0.17 -1.37 16 10 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 11 C -0.12 -0.80 5.92 30.59 0.18 -0.62 16 12 C -0.11 -0.77 5.20 30.59 0.16 -0.62 16 13 C -0.09 -0.57 2.30 -10.79 -0.02 -0.59 16 14 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 15 C -0.15 -1.09 9.03 71.98 0.65 -0.44 16 16 N -0.27 -8.30 2.75 -330.74 -0.91 -9.21 16 17 C -0.01 -0.32 10.60 83.49 0.89 0.56 16 18 C -0.04 -1.56 6.61 41.60 0.28 -1.29 16 19 C 0.24 10.86 6.82 85.63 0.58 11.44 16 20 N -0.74 -40.57 5.59 -347.18 -1.94 -42.51 16 21 C -0.24 -14.17 9.99 84.03 0.84 -13.33 16 22 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.97 -61.66 13.06 21.65 0.28 -61.38 16 25 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 N -0.29 -13.52 12.41 -48.60 -0.60 -14.12 16 30 N -0.11 -4.23 13.17 37.02 0.49 -3.75 16 31 H 0.07 0.84 7.17 -2.38 -0.02 0.83 16 32 H 0.13 0.07 7.55 -2.38 -0.02 0.06 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.42 0.97 7.79 -92.71 -0.72 0.24 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.06 0.38 7.44 -2.39 -0.02 0.36 16 44 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.22 5.54 7.30 -2.91 -0.02 5.52 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.37 22.14 7.66 -92.71 -0.71 21.43 16 50 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -86.59 403.84 2.79 -83.80 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.49 Total: 22.74 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.87 Total: 2.41 kcal Atomic # 7 Polarization: -135.58 SS G_CDS: -4.57 Total: -140.15 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -86.59 2.79 -83.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.066 kcal (2) G-P(sol) polarization free energy of solvation -86.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.90 seconds