Wall clock time and date at job start Tue Mar 31 2020 23:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46669 * 2 1 4 4 C 1.50698 * 109.47126 * 239.99543 * 2 1 3 5 5 O 1.21281 * 120.00170 * 240.00244 * 4 2 1 6 6 N 1.34776 * 119.99887 * 59.99778 * 4 2 1 7 7 C 1.46496 * 119.99730 * 179.97438 * 6 4 2 8 8 H 1.08999 * 109.47054 * 35.00509 * 7 6 4 9 9 C 1.52998 * 109.47260 * 275.00201 * 7 6 4 10 10 C 1.53001 * 109.47400 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47176 * 59.99606 * 10 9 7 12 12 C 1.52998 * 109.47277 * 300.00469 * 11 10 9 13 13 C 1.53001 * 109.46898 * 59.99845 * 12 11 10 14 14 H 1.08989 * 109.47235 * 60.00432 * 13 12 11 15 15 C 1.53005 * 109.46697 * 179.97438 * 13 12 11 16 16 N 1.46504 * 109.46972 * 119.99594 * 2 1 3 17 17 C 1.35314 * 125.86866 * 35.00007 * 16 2 1 18 18 C 1.35352 * 106.17167 * 179.97438 * 17 16 2 19 19 C 1.50706 * 126.74645 * 180.02562 * 18 17 16 20 20 N 1.46497 * 109.47068 * 94.99994 * 19 18 17 21 21 C 1.36937 * 120.00190 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00101 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00154 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00008 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99963 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46994 * 60.00339 * 25 23 21 27 27 H 1.48498 * 109.47139 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47164 * 300.00141 * 25 23 21 29 29 N 1.33761 * 106.49967 * 0.26227 * 18 17 16 30 30 N 1.28642 * 108.88641 * 359.56285 * 29 18 17 31 31 H 1.09000 * 109.47324 * 300.00167 * 1 2 3 32 32 H 1.08996 * 109.47316 * 60.00474 * 1 2 3 33 33 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99762 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.47338 * 300.00134 * 9 7 6 36 36 H 1.08998 * 109.47207 * 60.00097 * 9 7 6 37 37 H 1.09004 * 109.47095 * 300.00006 * 10 9 7 38 38 H 1.08997 * 109.47632 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.46864 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.46873 * 60.00676 * 11 10 9 41 41 H 1.08999 * 109.47338 * 299.99922 * 12 11 10 42 42 H 1.08998 * 109.47207 * 179.97438 * 12 11 10 43 43 H 1.09003 * 109.46730 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.47440 * 300.00133 * 15 13 12 45 45 H 1.08999 * 109.47306 * 60.00219 * 15 13 12 46 46 H 1.08001 * 126.91119 * 0.02562 * 17 16 2 47 47 H 1.08999 * 109.47032 * 214.99708 * 19 18 17 48 48 H 1.08998 * 109.47488 * 334.99848 * 19 18 17 49 49 H 0.97011 * 120.00131 * 359.97438 * 20 19 18 50 50 H 0.97004 * 119.99912 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6506 8 1 2.2325 -2.0133 -3.4612 9 6 3.5979 -0.4346 -3.9942 10 6 4.1082 -1.1551 -5.2437 11 6 3.1640 -0.8758 -6.4149 12 6 1.7616 -1.3818 -6.0713 13 6 1.2514 -0.6611 -4.8217 14 1 1.2144 0.4116 -5.0107 15 6 -0.1513 -1.1667 -4.4785 16 7 2.0183 -0.6905 1.1963 17 6 1.4357 -1.7586 1.7885 18 6 2.2131 -2.0708 2.8516 19 6 1.9887 -3.1907 3.8348 20 7 2.7597 -4.3656 3.4208 21 6 2.7126 -5.5131 4.1667 22 1 2.1074 -5.5518 5.0603 23 6 3.4427 -6.6265 3.7741 24 7 4.1807 -6.5792 2.6853 25 14 3.3778 -8.1920 4.7912 26 1 1.9782 -8.6844 4.8531 27 1 4.2395 -9.2260 4.1638 28 1 3.8646 -7.9100 6.1655 29 7 3.2167 -1.1865 2.8611 30 7 3.0755 -0.3858 1.8642 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.1493 0.5387 -2.5435 35 1 3.5609 0.6382 -4.1835 36 1 4.2704 -0.6332 -3.1597 37 1 4.1452 -2.2280 -5.0548 38 1 5.1074 -0.7950 -5.4883 39 1 3.5273 -1.3895 -7.3049 40 1 3.1271 0.1970 -6.6038 41 1 1.7985 -2.4546 -5.8823 42 1 1.0889 -1.1824 -6.9054 43 1 -0.5146 -0.6536 -3.5881 44 1 -0.8237 -0.9674 -5.3129 45 1 -0.1148 -2.2396 -4.2897 46 1 0.5326 -2.2614 1.4753 47 1 2.3129 -2.8743 4.8262 48 1 0.9287 -3.4431 3.8625 49 1 3.3037 -4.3308 2.6183 50 1 4.6912 -7.3572 2.4112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603184747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:25 Heat of formation + Delta-G solvation = 59.157363 kcal Electronic energy + Delta-G solvation = -29402.670980 eV Core-core repulsion = 25466.908348 eV Total energy + Delta-G solvation = -3935.762633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.93107 -40.58316 -38.71451 -35.53899 -34.71272 -34.43559 -32.89394 -31.90877 -30.93401 -29.82631 -29.59755 -26.73652 -26.04471 -25.12847 -23.34382 -22.70284 -21.93498 -21.53459 -20.75720 -20.68279 -19.94184 -17.99969 -17.47054 -16.92380 -16.30632 -15.63125 -15.57822 -14.97793 -14.89180 -14.57917 -14.55353 -14.36709 -14.23509 -13.74429 -13.59991 -13.32410 -13.22985 -13.03897 -12.94529 -12.77861 -12.53126 -12.32462 -12.27113 -12.00180 -11.75563 -11.59780 -11.31063 -11.15717 -10.96835 -10.88950 -10.80767 -10.71960 -10.59333 -10.37259 -10.33401 -10.03352 -9.69625 -9.55956 -9.38086 -8.77895 -8.69315 -6.80555 -5.62508 -2.92541 1.79269 2.22588 2.32021 2.84996 3.05916 3.52731 3.56463 3.58297 4.03750 4.12195 4.20809 4.28826 4.35324 4.43645 4.68256 4.70820 4.76478 4.79656 4.95377 4.99141 5.00708 5.04640 5.06305 5.10370 5.27791 5.31896 5.38429 5.42425 5.46398 5.59673 5.61183 5.63092 5.70172 5.72610 5.74863 5.81465 5.86317 5.93662 5.96433 6.02756 6.16636 6.29975 6.51878 6.76054 6.78972 6.88349 7.07868 7.79525 7.84162 8.54089 8.95244 9.65418 10.22884 10.58902 11.59883 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.002676 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.433533 B =10460.916604 C =11739.175124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 H 0.135 0.865 4 C 0.501 3.499 5 O -0.499 6.499 6 N -0.721 5.721 7 C 0.151 3.849 8 H 0.091 0.909 9 C -0.131 4.131 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.096 4.096 14 H 0.075 0.925 15 C -0.149 4.149 16 N -0.285 5.285 17 C -0.030 4.030 18 C -0.005 4.005 19 C 0.234 3.766 20 N -0.726 5.726 21 C -0.240 4.240 22 H 0.072 0.928 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.909 3.091 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 N -0.249 5.249 30 N -0.092 5.092 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.184 0.816 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.387 0.613 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 19.939 -20.996 31.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 H 0.153 0.847 4 C 0.283 3.717 5 O -0.371 6.371 6 N -0.374 5.374 7 C 0.047 3.953 8 H 0.110 0.890 9 C -0.169 4.169 10 C -0.157 4.157 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.115 4.115 14 H 0.093 0.907 15 C -0.206 4.206 16 N -0.079 5.079 17 C -0.180 4.180 18 C -0.142 4.142 19 C 0.105 3.895 20 N -0.371 5.371 21 C -0.371 4.371 22 H 0.090 0.910 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.740 3.260 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.212 1.212 29 N -0.117 5.117 30 N -0.070 5.070 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.201 0.799 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.221 0.779 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.444 20.033 -20.660 30.614 hybrid contribution -0.917 -1.141 -0.124 1.469 sum -11.361 18.892 -20.783 30.297 Atomic orbital electron populations 1.22168 0.89917 1.05032 1.04813 1.21348 0.97055 0.97872 0.81448 0.84729 1.20522 0.81274 0.85315 0.84567 1.90909 1.35410 1.24801 1.85994 1.45928 1.54194 1.32265 1.05051 1.21078 0.92932 0.98276 0.83025 0.89050 1.21927 0.96338 1.00105 0.98547 1.21503 0.98813 1.01149 0.94196 1.21573 0.94989 1.01174 0.98119 1.21568 0.96476 1.00471 0.96511 1.21395 0.94836 1.00792 0.94505 0.90679 1.21851 0.95551 1.01868 1.01365 1.46724 1.18410 1.22594 1.20202 1.23191 1.03857 0.93447 0.97468 1.22398 0.93044 0.99547 0.99204 1.18926 0.95466 0.82807 0.92325 1.42327 1.55237 1.08508 1.30979 1.19179 1.23229 0.89538 1.05155 0.90990 1.24771 0.99907 0.98307 0.97991 1.69697 1.33334 1.29923 1.24863 0.86245 0.77180 0.83180 0.79419 1.21305 1.21780 1.21230 1.75056 1.20504 1.03592 1.12575 1.78235 1.03472 1.22393 1.02912 0.89678 0.89288 0.90233 0.76678 0.91816 0.91162 0.91499 0.91598 0.91747 0.91969 0.91436 0.91433 0.92554 0.92377 0.92280 0.79876 0.94399 0.94629 0.77933 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.73 37.16 0.32 -0.60 16 2 C 0.13 1.28 3.65 -69.08 -0.25 1.03 16 3 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.50 5.85 7.19 -10.99 -0.08 5.77 16 5 O -0.50 -9.00 16.08 5.56 0.09 -8.92 16 6 N -0.72 -5.35 4.27 -53.81 -0.23 -5.58 16 7 C 0.15 1.24 1.90 -67.93 -0.13 1.11 16 8 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 9 C -0.13 -1.13 5.49 -26.73 -0.15 -1.28 16 10 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 11 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 12 C -0.11 -0.64 5.20 -26.73 -0.14 -0.78 16 13 C -0.10 -0.53 2.30 -90.62 -0.21 -0.74 16 14 H 0.07 0.33 8.14 -51.94 -0.42 -0.09 16 15 C -0.15 -0.79 9.04 37.16 0.34 -0.45 16 16 N -0.29 -4.47 2.75 -55.89 -0.15 -4.62 16 17 C -0.03 -0.50 10.60 -17.05 -0.18 -0.68 16 18 C 0.00 -0.10 6.61 -82.78 -0.55 -0.64 16 19 C 0.23 5.26 6.82 -5.19 -0.04 5.23 16 20 N -0.73 -20.28 5.59 -61.09 -0.34 -20.63 16 21 C -0.24 -7.09 9.99 -15.06 -0.15 -7.24 16 22 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -30.08 13.06 55.49 0.72 -29.35 16 25 Si 0.91 23.34 29.55 -169.99 -5.02 18.31 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 N -0.25 -5.53 12.41 33.29 0.41 -5.12 16 30 N -0.09 -1.78 13.17 60.35 0.79 -0.99 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.21 7.56 -51.93 -0.39 -0.19 16 33 H 0.08 0.53 7.17 -51.93 -0.37 0.16 16 34 H 0.40 1.50 7.81 -40.82 -0.32 1.19 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.25 7.45 -51.93 -0.39 -0.13 16 44 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.18 2.52 7.30 -52.49 -0.38 2.14 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.39 11.85 7.66 -40.82 -0.31 11.54 16 50 H 0.25 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -39.44 403.87 -7.71 -47.15 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.45 Total: 5.38 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.62 Total: -1.73 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 1.21 Total: -66.28 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.44 -7.71 -47.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.303 kcal (2) G-P(sol) polarization free energy of solvation -39.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds