Wall clock time and date at job start Tue Mar 31 2020 23:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46669 * 2 1 4 4 C 1.50698 * 109.47126 * 239.99543 * 2 1 3 5 5 O 1.21281 * 120.00170 * 240.00244 * 4 2 1 6 6 N 1.34776 * 119.99887 * 59.99778 * 4 2 1 7 7 C 1.46496 * 119.99730 * 179.97438 * 6 4 2 8 8 H 1.08999 * 109.47054 * 35.00509 * 7 6 4 9 9 C 1.52998 * 109.47260 * 275.00201 * 7 6 4 10 10 C 1.53001 * 109.47400 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47176 * 59.99606 * 10 9 7 12 12 C 1.52998 * 109.47277 * 300.00469 * 11 10 9 13 13 C 1.53001 * 109.46898 * 59.99845 * 12 11 10 14 14 H 1.08989 * 109.47235 * 60.00432 * 13 12 11 15 15 C 1.53005 * 109.46697 * 179.97438 * 13 12 11 16 16 N 1.46504 * 109.46972 * 119.99594 * 2 1 3 17 17 C 1.35314 * 125.86866 * 35.00007 * 16 2 1 18 18 C 1.35352 * 106.17167 * 179.97438 * 17 16 2 19 19 C 1.50706 * 126.74645 * 180.02562 * 18 17 16 20 20 N 1.46497 * 109.47068 * 94.99994 * 19 18 17 21 21 C 1.36937 * 120.00190 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00101 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00154 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00008 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99963 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46994 * 60.00339 * 25 23 21 27 27 H 1.48498 * 109.47139 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47164 * 300.00141 * 25 23 21 29 29 N 1.33761 * 106.49967 * 0.26227 * 18 17 16 30 30 N 1.28642 * 108.88641 * 359.56285 * 29 18 17 31 31 H 1.09000 * 109.47324 * 300.00167 * 1 2 3 32 32 H 1.08996 * 109.47316 * 60.00474 * 1 2 3 33 33 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 34 34 H 0.97001 * 119.99762 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.47338 * 300.00134 * 9 7 6 36 36 H 1.08998 * 109.47207 * 60.00097 * 9 7 6 37 37 H 1.09004 * 109.47095 * 300.00006 * 10 9 7 38 38 H 1.08997 * 109.47632 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.46864 * 180.02562 * 11 10 9 40 40 H 1.08999 * 109.46873 * 60.00676 * 11 10 9 41 41 H 1.08999 * 109.47338 * 299.99922 * 12 11 10 42 42 H 1.08998 * 109.47207 * 179.97438 * 12 11 10 43 43 H 1.09003 * 109.46730 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.47440 * 300.00133 * 15 13 12 45 45 H 1.08999 * 109.47306 * 60.00219 * 15 13 12 46 46 H 1.08001 * 126.91119 * 0.02562 * 17 16 2 47 47 H 1.08999 * 109.47032 * 214.99708 * 19 18 17 48 48 H 1.08998 * 109.47488 * 334.99848 * 19 18 17 49 49 H 0.97011 * 120.00131 * 359.97438 * 20 19 18 50 50 H 0.97004 * 119.99912 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6506 8 1 2.2325 -2.0133 -3.4612 9 6 3.5979 -0.4346 -3.9942 10 6 4.1082 -1.1551 -5.2437 11 6 3.1640 -0.8758 -6.4149 12 6 1.7616 -1.3818 -6.0713 13 6 1.2514 -0.6611 -4.8217 14 1 1.2144 0.4116 -5.0107 15 6 -0.1513 -1.1667 -4.4785 16 7 2.0183 -0.6905 1.1963 17 6 1.4357 -1.7586 1.7885 18 6 2.2131 -2.0708 2.8516 19 6 1.9887 -3.1907 3.8348 20 7 2.7597 -4.3656 3.4208 21 6 2.7126 -5.5131 4.1667 22 1 2.1074 -5.5518 5.0603 23 6 3.4427 -6.6265 3.7741 24 7 4.1807 -6.5792 2.6853 25 14 3.3778 -8.1920 4.7912 26 1 1.9782 -8.6844 4.8531 27 1 4.2395 -9.2260 4.1638 28 1 3.8646 -7.9100 6.1655 29 7 3.2167 -1.1865 2.8611 30 7 3.0755 -0.3858 1.8642 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.1493 0.5387 -2.5435 35 1 3.5609 0.6382 -4.1835 36 1 4.2704 -0.6332 -3.1597 37 1 4.1452 -2.2280 -5.0548 38 1 5.1074 -0.7950 -5.4883 39 1 3.5273 -1.3895 -7.3049 40 1 3.1271 0.1970 -6.6038 41 1 1.7985 -2.4546 -5.8823 42 1 1.0889 -1.1824 -6.9054 43 1 -0.5146 -0.6536 -3.5881 44 1 -0.8237 -0.9674 -5.3129 45 1 -0.1148 -2.2396 -4.2897 46 1 0.5326 -2.2614 1.4753 47 1 2.3129 -2.8743 4.8262 48 1 0.9287 -3.4431 3.8625 49 1 3.3037 -4.3308 2.6183 50 1 4.6912 -7.3572 2.4112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603184747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:16 Heat of formation + Delta-G solvation = 29.744165 kcal Electronic energy + Delta-G solvation = -29403.946432 eV Core-core repulsion = 25466.908348 eV Total energy + Delta-G solvation = -3937.038085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.32048 -41.44311 -39.47192 -36.99910 -36.19137 -35.43090 -33.80001 -33.44854 -32.02812 -31.64836 -30.29550 -27.79750 -27.25116 -26.14423 -24.75935 -24.23520 -22.82240 -22.31590 -22.16604 -21.52226 -20.74413 -19.37932 -18.90660 -18.25509 -17.21995 -16.96181 -16.54743 -16.45218 -15.98198 -15.68071 -15.47762 -15.40920 -15.22672 -14.99709 -14.93869 -14.47648 -14.27683 -13.91139 -13.83255 -13.73502 -13.46304 -13.35454 -13.10116 -12.87791 -12.77115 -12.72892 -12.55649 -12.50988 -12.21631 -12.14028 -11.91824 -11.85371 -11.83489 -11.68094 -11.48519 -11.37120 -11.22185 -10.95597 -10.73626 -10.21168 -10.16860 -9.03872 -7.92837 -5.25032 0.49322 1.23337 1.32188 1.43973 1.49830 1.53096 1.59241 2.00248 2.59081 3.26029 3.35389 3.40078 3.54681 3.59510 3.65531 3.73797 3.90317 3.95763 4.12017 4.16079 4.18734 4.21169 4.39237 4.44325 4.46537 4.49278 4.52550 4.55063 4.64808 4.76638 4.80381 4.83018 4.97354 5.03625 5.04974 5.06039 5.11824 5.12592 5.17889 5.21006 5.24295 5.33560 5.38855 5.40256 5.48859 5.54719 5.59332 6.24951 6.35109 7.05595 7.30758 7.47916 8.02377 8.29193 9.31071 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.002676 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.433533 B =10460.916604 C =11739.175124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.120 3.880 3 H 0.166 0.834 4 C 0.501 3.499 5 O -0.574 6.574 6 N -0.693 5.693 7 C 0.151 3.849 8 H 0.051 0.949 9 C -0.127 4.127 10 C -0.120 4.120 11 C -0.115 4.115 12 C -0.114 4.114 13 C -0.086 4.086 14 H 0.103 0.897 15 C -0.149 4.149 16 N -0.270 5.270 17 C -0.010 4.010 18 C -0.038 4.038 19 C 0.236 3.764 20 N -0.742 5.742 21 C -0.245 4.245 22 H 0.088 0.912 23 C -0.083 4.083 24 N -0.976 5.976 25 Si 0.985 3.015 26 H -0.269 1.269 27 H -0.298 1.298 28 H -0.276 1.276 29 N -0.295 5.295 30 N -0.108 5.108 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.072 0.928 34 H 0.423 0.577 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.033 0.967 48 H 0.064 0.936 49 H 0.367 0.633 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 22.114 -22.330 34.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 H 0.184 0.816 4 C 0.285 3.715 5 O -0.452 6.452 6 N -0.346 5.346 7 C 0.047 3.953 8 H 0.069 0.931 9 C -0.166 4.166 10 C -0.159 4.159 11 C -0.152 4.152 12 C -0.152 4.152 13 C -0.104 4.104 14 H 0.121 0.879 15 C -0.206 4.206 16 N -0.064 5.064 17 C -0.162 4.162 18 C -0.176 4.176 19 C 0.109 3.891 20 N -0.384 5.384 21 C -0.377 4.377 22 H 0.106 0.894 23 C -0.274 4.274 24 N -0.627 5.627 25 Si 0.812 3.188 26 H -0.195 1.195 27 H -0.225 1.225 28 H -0.202 1.202 29 N -0.162 5.162 30 N -0.086 5.086 31 H 0.115 0.885 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.234 0.766 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.198 0.802 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.769 22.315 -22.007 34.232 hybrid contribution 0.056 -1.687 0.169 1.696 sum -13.713 20.628 -21.837 33.022 Atomic orbital electron populations 1.22313 0.85921 1.05501 1.07648 1.22042 0.99995 0.98173 0.78247 0.81633 1.20887 0.80175 0.84356 0.86061 1.90901 1.38996 1.28271 1.87039 1.45709 1.53033 1.32290 1.03606 1.21053 0.93861 0.96168 0.84255 0.93054 1.21881 0.95696 1.01554 0.97425 1.21516 0.99792 0.99611 0.94938 1.21544 0.94382 1.02317 0.97001 1.21602 0.96821 0.99466 0.97285 1.21367 0.94024 1.02358 0.92691 0.87895 1.21867 0.95526 1.00580 1.02669 1.47141 1.16753 1.21864 1.20659 1.23547 1.03904 0.92947 0.95752 1.22276 0.94432 0.99964 1.00888 1.18987 0.95903 0.81754 0.92498 1.42570 1.55690 1.09926 1.30224 1.19712 1.22509 0.90092 1.05337 0.89405 1.25759 1.00032 1.02175 0.99437 1.69909 1.34909 1.30678 1.27188 0.85053 0.77700 0.78334 0.77684 1.19500 1.22466 1.20201 1.74971 1.21933 1.04913 1.14429 1.78084 1.04928 1.22550 1.03065 0.88451 0.84831 0.90929 0.73837 0.89467 0.95227 0.93837 0.91376 0.91274 0.90196 0.93269 0.89408 0.91252 0.90743 0.94523 0.76625 0.94948 0.91810 0.80201 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.73 71.98 0.63 -0.51 16 2 C 0.12 2.10 3.65 44.24 0.16 2.26 16 3 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.50 11.40 7.19 87.66 0.63 12.03 16 5 O -0.57 -21.84 16.08 -3.03 -0.05 -21.88 16 6 N -0.69 -8.97 4.27 -442.54 -1.89 -10.86 16 7 C 0.15 2.43 1.90 44.99 0.09 2.51 16 8 H 0.05 1.28 7.58 -2.39 -0.02 1.26 16 9 C -0.13 -2.22 5.49 30.59 0.17 -2.05 16 10 C -0.12 -1.92 5.92 30.60 0.18 -1.74 16 11 C -0.12 -1.16 5.92 30.60 0.18 -0.98 16 12 C -0.11 -1.09 5.20 30.59 0.16 -0.93 16 13 C -0.09 -0.73 2.30 -10.79 -0.02 -0.75 16 14 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 15 C -0.15 -1.17 9.04 71.98 0.65 -0.52 16 16 N -0.27 -8.28 2.75 -330.74 -0.91 -9.19 16 17 C -0.01 -0.33 10.60 83.49 0.89 0.55 16 18 C -0.04 -1.59 6.61 41.60 0.28 -1.32 16 19 C 0.24 10.77 6.82 85.64 0.58 11.35 16 20 N -0.74 -42.59 5.59 -347.18 -1.94 -44.53 16 21 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 22 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 23 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 24 N -0.98 -65.34 13.06 21.65 0.28 -65.06 16 25 Si 0.98 48.62 29.55 68.60 2.03 50.65 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 27 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 29 N -0.30 -13.55 12.41 -48.60 -0.60 -14.15 16 30 N -0.11 -4.26 13.17 37.02 0.49 -3.77 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.13 -0.19 7.56 -2.39 -0.02 -0.21 16 33 H 0.07 0.70 7.17 -2.38 -0.02 0.68 16 34 H 0.42 1.39 7.81 -92.71 -0.72 0.67 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 43 H 0.07 0.35 7.45 -2.39 -0.02 0.33 16 44 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.22 5.52 7.30 -2.91 -0.02 5.50 16 47 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.37 23.58 7.66 -92.70 -0.71 22.87 16 50 H 0.25 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -93.44 403.87 2.78 -90.66 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.49 Total: 26.64 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.87 Total: 1.49 kcal Atomic # 7 Polarization: -142.98 SS G_CDS: -4.58 Total: -147.56 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -93.44 2.78 -90.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603184747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.403 kcal (2) G-P(sol) polarization free energy of solvation -93.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds