Wall clock time and date at job start Tue Mar 31 2020 23:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47718 * 2 1 4 4 C 1.53004 * 109.47177 * 120.00395 * 2 1 3 5 5 C 1.52997 * 109.47152 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47412 * 300.00040 * 5 4 2 7 7 C 1.52996 * 109.47209 * 60.00280 * 6 5 4 8 8 C 1.53003 * 109.46922 * 299.99926 * 7 6 5 9 9 H 1.08993 * 109.47107 * 180.02562 * 8 7 6 10 10 N 1.46511 * 109.47333 * 300.00066 * 8 7 6 11 11 C 1.46503 * 119.99381 * 9.51370 * 10 8 7 12 12 C 1.34770 * 120.00132 * 189.51493 * 10 8 7 13 13 O 1.21283 * 119.99947 * 358.43753 * 12 10 8 14 14 C 1.50703 * 119.99755 * 178.43805 * 12 10 8 15 15 N 1.46503 * 109.46814 * 180.02562 * 14 12 10 16 16 C 1.35311 * 125.86890 * 125.00523 * 15 14 12 17 17 C 1.35357 * 106.17376 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.74992 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.47111 * 94.99444 * 18 17 16 20 20 C 1.36939 * 119.99615 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00012 * 179.97438 * 20 19 18 23 23 N 1.31612 * 120.00310 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99738 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46932 * 89.99587 * 24 22 20 26 26 H 1.48495 * 109.46822 * 209.99539 * 24 22 20 27 27 H 1.48494 * 109.47061 * 329.99750 * 24 22 20 28 28 N 1.33769 * 106.49438 * 359.97438 * 17 16 15 29 29 N 1.28635 * 108.88845 * 359.74373 * 28 17 16 30 30 H 1.09006 * 109.47003 * 307.79847 * 1 2 3 31 31 H 1.08993 * 109.47673 * 187.79411 * 1 2 3 32 32 H 1.09000 * 109.47234 * 67.79108 * 1 2 3 33 33 H 1.08998 * 109.46844 * 300.00014 * 4 2 1 34 34 H 1.09009 * 109.46839 * 59.99198 * 4 2 1 35 35 H 1.09000 * 109.46967 * 60.00673 * 5 4 2 36 36 H 1.09007 * 109.46859 * 179.97438 * 5 4 2 37 37 H 1.09003 * 109.47189 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47213 * 299.99639 * 6 5 4 39 39 H 1.08996 * 109.47352 * 59.99540 * 7 6 5 40 40 H 1.08996 * 109.47145 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.47195 * 88.29674 * 11 10 8 42 42 H 1.08998 * 109.46595 * 208.29301 * 11 10 8 43 43 H 1.08994 * 109.47600 * 328.29474 * 11 10 8 44 44 H 1.08998 * 109.47051 * 299.99521 * 14 12 10 45 45 H 1.08995 * 109.46817 * 60.00269 * 14 12 10 46 46 H 1.07992 * 126.91268 * 0.02562 * 16 15 14 47 47 H 1.09003 * 109.46607 * 214.99624 * 18 17 16 48 48 H 1.08999 * 109.47175 * 334.99314 * 18 17 16 49 49 H 0.97003 * 120.00467 * 0.02562 * 19 18 17 50 50 H 0.96996 * 120.00326 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5696 -0.7221 -1.2495 8 6 2.0396 -0.7215 -1.2493 9 1 1.6763 -0.2081 -2.1394 10 7 1.5507 -2.1027 -1.2491 11 6 2.4860 -3.2106 -1.0395 12 6 0.2407 -2.3538 -1.4418 13 8 -0.5379 -1.4353 -1.5871 14 6 -0.2567 -3.7760 -1.4767 15 7 -1.7048 -3.7815 -1.6982 16 6 -2.3531 -4.4389 -2.6874 17 6 -3.6692 -4.1719 -2.5180 18 6 -4.8077 -4.6736 -3.3685 19 7 -5.3744 -5.8812 -2.7629 20 6 -6.4277 -6.5183 -3.3627 21 1 -6.8403 -6.1308 -4.2825 22 6 -6.9643 -7.6629 -2.7892 23 7 -7.9763 -8.2756 -3.3660 24 14 -6.2501 -8.3336 -1.1987 25 1 -6.9559 -7.7237 -0.0432 26 1 -6.4222 -9.8080 -1.1618 27 1 -4.8044 -8.0020 -1.1268 28 7 -3.7605 -3.3752 -1.4474 29 7 -2.5797 -3.1673 -0.9812 30 1 -0.3633 0.6299 0.8121 31 1 -0.3634 -1.0181 0.1394 32 1 -0.3634 0.3884 -0.9514 33 1 1.6766 -0.2076 2.1392 34 1 1.6765 -1.7490 1.2492 35 1 3.9336 0.3056 1.2489 36 1 3.9333 -1.2354 2.1391 37 1 5.1695 -1.4442 -0.0003 38 1 3.7158 -2.4710 -0.0002 39 1 3.9332 0.3055 -1.2497 40 1 3.9322 -1.2363 -2.1395 41 1 2.5811 -3.4088 0.0282 42 1 2.1116 -4.1022 -1.5425 43 1 3.4610 -2.9453 -1.4480 44 1 0.2364 -4.3135 -2.2867 45 1 -0.0320 -4.2628 -0.5277 46 1 -1.9097 -5.0537 -3.4566 47 1 -5.5776 -3.9048 -3.4350 48 1 -4.4397 -4.9066 -4.3676 49 1 -5.0040 -6.2291 -1.9366 50 1 -8.3515 -9.0752 -2.9651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603208110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:31 Heat of formation + Delta-G solvation = 130.315595 kcal Electronic energy + Delta-G solvation = -29906.509371 eV Core-core repulsion = 25973.832390 eV Total energy + Delta-G solvation = -3932.676980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.50 seconds Orbital eigenvalues (eV) -43.03836 -41.48714 -38.62571 -35.45028 -35.20665 -34.15706 -33.09832 -31.84891 -31.06888 -30.24474 -28.61607 -28.05648 -26.09134 -25.98042 -23.27650 -22.39265 -22.16786 -21.77351 -21.10458 -20.37509 -19.20015 -17.90973 -17.82336 -17.13459 -17.00719 -16.20626 -15.61500 -15.30781 -15.09024 -14.69870 -14.55288 -14.46465 -14.14005 -14.01343 -13.81561 -13.55214 -13.42393 -12.92200 -12.79779 -12.67860 -12.63871 -12.52788 -12.25493 -12.05455 -11.85354 -11.67789 -11.48050 -11.05825 -11.01874 -10.83180 -10.73140 -10.53639 -10.47514 -10.41504 -10.21351 -10.11990 -9.60922 -9.54591 -8.90438 -8.88678 -8.84280 -7.18459 -5.71682 -3.06913 1.70659 2.07740 2.15489 2.63626 2.89801 3.42554 3.48048 3.50652 3.78496 4.13097 4.19769 4.21473 4.26348 4.48196 4.51001 4.65222 4.65635 4.68923 4.70295 4.76485 4.93321 4.98744 4.99670 5.00796 5.12253 5.20658 5.21757 5.43453 5.46007 5.50262 5.51148 5.60767 5.62449 5.73035 5.74584 5.77226 5.79442 5.84682 5.93217 6.02861 6.20903 6.34778 6.48718 6.62842 6.64240 6.74835 6.83891 7.70629 8.03495 8.47153 8.82836 9.25564 9.98137 10.18734 11.46544 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.002299 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.131819 B =12178.511903 C =12370.352831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.162 4.162 7 C -0.125 4.125 8 C 0.157 3.843 9 H 0.080 0.920 10 N -0.604 5.604 11 C 0.060 3.940 12 C 0.489 3.511 13 O -0.479 6.479 14 C 0.102 3.898 15 N -0.293 5.293 16 C -0.046 4.046 17 C -0.010 4.010 18 C 0.238 3.762 19 N -0.750 5.750 20 C -0.241 4.241 21 H 0.093 0.907 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.885 3.115 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.280 1.280 28 N -0.255 5.255 29 N -0.066 5.066 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.190 0.810 47 H 0.048 0.952 48 H 0.046 0.954 49 H 0.362 0.638 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.721 14.098 5.882 37.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.199 4.199 7 C -0.163 4.163 8 C 0.055 3.945 9 H 0.098 0.902 10 N -0.340 5.340 11 C -0.083 4.083 12 C 0.274 3.726 13 O -0.351 6.351 14 C -0.024 4.024 15 N -0.087 5.087 16 C -0.196 4.196 17 C -0.147 4.147 18 C 0.110 3.890 19 N -0.396 5.396 20 C -0.371 4.371 21 H 0.111 0.889 22 C -0.190 4.190 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.206 1.206 28 N -0.123 5.123 29 N -0.046 5.046 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.207 0.793 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.195 0.805 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 32.888 15.474 6.836 36.984 hybrid contribution 0.986 -1.312 0.340 1.676 sum 33.874 14.163 7.176 37.410 Atomic orbital electron populations 1.22359 0.92907 1.02944 1.01423 1.21603 0.97358 0.98930 0.94136 0.90795 1.21560 0.95001 1.00842 0.97563 1.21518 0.95825 1.00614 0.97613 1.22544 1.00645 1.02375 0.94315 1.21799 0.93715 1.02156 0.98616 1.21123 0.93584 0.81128 0.98674 0.90211 1.47696 1.06564 1.07237 1.72510 1.22418 0.95160 0.89125 1.01558 1.20159 0.82473 0.90548 0.79433 1.90962 1.55032 1.44187 1.44962 1.21798 0.76787 0.97352 1.06494 1.46698 1.07349 1.33837 1.20820 1.23385 0.93597 1.04734 0.97857 1.22484 0.94710 0.99838 0.97633 1.18906 0.89046 0.89146 0.91944 1.42659 1.39664 1.28750 1.28504 1.19053 1.05917 1.05571 1.06567 0.88889 1.24633 0.97977 0.97954 0.98459 1.69694 1.26427 1.21452 1.40612 0.86539 0.78733 0.78134 0.85071 1.20973 1.21786 1.20593 1.75135 1.12839 1.14565 1.09784 1.78354 0.92663 1.15591 1.17978 0.94895 0.91095 0.91070 0.92066 0.92071 0.92258 0.92099 0.91943 0.88388 0.90260 0.91189 0.91305 0.91358 0.89038 0.85089 0.86054 0.79311 0.93436 0.93651 0.80511 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.27 37.16 0.27 -1.30 16 2 C -0.10 -0.78 2.54 -90.62 -0.23 -1.01 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.75 5.04 -26.73 -0.13 -0.89 16 5 C -0.12 -0.57 5.92 -26.74 -0.16 -0.73 16 6 C -0.16 -0.57 5.14 -26.74 -0.14 -0.70 16 7 C -0.13 -0.51 4.95 -26.73 -0.13 -0.64 16 8 C 0.16 1.04 2.61 -67.92 -0.18 0.86 16 9 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 10 N -0.60 -3.75 2.23 -176.69 -0.39 -4.15 16 11 C 0.06 0.16 7.94 59.85 0.48 0.63 16 12 C 0.49 4.64 6.33 -10.99 -0.07 4.57 16 13 O -0.48 -6.64 10.50 5.56 0.06 -6.58 16 14 C 0.10 0.83 5.43 -5.19 -0.03 0.80 16 15 N -0.29 -4.10 3.19 -62.44 -0.20 -4.30 16 16 C -0.05 -0.68 11.50 -17.04 -0.20 -0.88 16 17 C -0.01 -0.18 6.62 -82.78 -0.55 -0.73 16 18 C 0.24 4.98 6.82 -5.20 -0.04 4.94 16 19 N -0.75 -18.85 5.40 -61.09 -0.33 -19.18 16 20 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 21 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 24 Si 0.88 22.98 27.74 -169.99 -4.71 18.27 16 25 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 28 N -0.26 -5.30 12.41 33.29 0.41 -4.89 16 29 N -0.07 -1.21 12.15 60.35 0.73 -0.48 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.93 5.20 -52.09 -0.27 0.66 16 32 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 6.94 -51.92 -0.36 0.09 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 37 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.26 3.02 -55.38 -0.17 0.09 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.23 7.32 -51.93 -0.38 -0.15 16 41 H 0.07 0.15 6.28 -51.93 -0.33 -0.18 16 42 H 0.07 0.07 6.38 -51.93 -0.33 -0.26 16 43 H 0.09 0.14 4.90 -51.93 -0.25 -0.11 16 44 H 0.13 0.55 7.38 -51.93 -0.38 0.16 16 45 H 0.12 0.73 8.09 -51.93 -0.42 0.31 16 46 H 0.19 2.02 8.06 -52.49 -0.42 1.59 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.36 9.16 5.52 -40.82 -0.23 8.94 16 50 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -38.05 375.91 -7.06 -45.10 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.71 Total: 1.74 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.36 Total: -2.18 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 1.00 Total: -62.02 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: 0.06 Total: -6.58 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.27 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.05 -7.06 -45.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603208110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.416 kcal (2) G-P(sol) polarization free energy of solvation -38.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.50 seconds