Wall clock time and date at job start Tue Mar 31 2020 23:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47718 * 2 1 4 4 C 1.53004 * 109.47177 * 120.00395 * 2 1 3 5 5 C 1.52997 * 109.47152 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47412 * 300.00040 * 5 4 2 7 7 C 1.52996 * 109.47209 * 60.00280 * 6 5 4 8 8 C 1.53003 * 109.46922 * 299.99926 * 7 6 5 9 9 H 1.08993 * 109.47107 * 180.02562 * 8 7 6 10 10 N 1.46511 * 109.47333 * 300.00066 * 8 7 6 11 11 C 1.46503 * 119.99381 * 9.51370 * 10 8 7 12 12 C 1.34770 * 120.00132 * 189.51493 * 10 8 7 13 13 O 1.21283 * 119.99947 * 358.43753 * 12 10 8 14 14 C 1.50703 * 119.99755 * 178.43805 * 12 10 8 15 15 N 1.46503 * 109.46814 * 180.02562 * 14 12 10 16 16 C 1.35311 * 125.86890 * 125.00523 * 15 14 12 17 17 C 1.35357 * 106.17376 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.74992 * 179.97438 * 17 16 15 19 19 N 1.46496 * 109.47111 * 94.99444 * 18 17 16 20 20 C 1.36939 * 119.99615 * 179.97438 * 19 18 17 21 21 H 1.07995 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00012 * 179.97438 * 20 19 18 23 23 N 1.31612 * 120.00310 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99738 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46932 * 89.99587 * 24 22 20 26 26 H 1.48495 * 109.46822 * 209.99539 * 24 22 20 27 27 H 1.48494 * 109.47061 * 329.99750 * 24 22 20 28 28 N 1.33769 * 106.49438 * 359.97438 * 17 16 15 29 29 N 1.28635 * 108.88845 * 359.74373 * 28 17 16 30 30 H 1.09006 * 109.47003 * 307.79847 * 1 2 3 31 31 H 1.08993 * 109.47673 * 187.79411 * 1 2 3 32 32 H 1.09000 * 109.47234 * 67.79108 * 1 2 3 33 33 H 1.08998 * 109.46844 * 300.00014 * 4 2 1 34 34 H 1.09009 * 109.46839 * 59.99198 * 4 2 1 35 35 H 1.09000 * 109.46967 * 60.00673 * 5 4 2 36 36 H 1.09007 * 109.46859 * 179.97438 * 5 4 2 37 37 H 1.09003 * 109.47189 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47213 * 299.99639 * 6 5 4 39 39 H 1.08996 * 109.47352 * 59.99540 * 7 6 5 40 40 H 1.08996 * 109.47145 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.47195 * 88.29674 * 11 10 8 42 42 H 1.08998 * 109.46595 * 208.29301 * 11 10 8 43 43 H 1.08994 * 109.47600 * 328.29474 * 11 10 8 44 44 H 1.08998 * 109.47051 * 299.99521 * 14 12 10 45 45 H 1.08995 * 109.46817 * 60.00269 * 14 12 10 46 46 H 1.07992 * 126.91268 * 0.02562 * 16 15 14 47 47 H 1.09003 * 109.46607 * 214.99624 * 18 17 16 48 48 H 1.08999 * 109.47175 * 334.99314 * 18 17 16 49 49 H 0.97003 * 120.00467 * 0.02562 * 19 18 17 50 50 H 0.96996 * 120.00326 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5696 -0.7221 -1.2495 8 6 2.0396 -0.7215 -1.2493 9 1 1.6763 -0.2081 -2.1394 10 7 1.5507 -2.1027 -1.2491 11 6 2.4860 -3.2106 -1.0395 12 6 0.2407 -2.3538 -1.4418 13 8 -0.5379 -1.4353 -1.5871 14 6 -0.2567 -3.7760 -1.4767 15 7 -1.7048 -3.7815 -1.6982 16 6 -2.3531 -4.4389 -2.6874 17 6 -3.6692 -4.1719 -2.5180 18 6 -4.8077 -4.6736 -3.3685 19 7 -5.3744 -5.8812 -2.7629 20 6 -6.4277 -6.5183 -3.3627 21 1 -6.8403 -6.1308 -4.2825 22 6 -6.9643 -7.6629 -2.7892 23 7 -7.9763 -8.2756 -3.3660 24 14 -6.2501 -8.3336 -1.1987 25 1 -6.9559 -7.7237 -0.0432 26 1 -6.4222 -9.8080 -1.1618 27 1 -4.8044 -8.0020 -1.1268 28 7 -3.7605 -3.3752 -1.4474 29 7 -2.5797 -3.1673 -0.9812 30 1 -0.3633 0.6299 0.8121 31 1 -0.3634 -1.0181 0.1394 32 1 -0.3634 0.3884 -0.9514 33 1 1.6766 -0.2076 2.1392 34 1 1.6765 -1.7490 1.2492 35 1 3.9336 0.3056 1.2489 36 1 3.9333 -1.2354 2.1391 37 1 5.1695 -1.4442 -0.0003 38 1 3.7158 -2.4710 -0.0002 39 1 3.9332 0.3055 -1.2497 40 1 3.9322 -1.2363 -2.1395 41 1 2.5811 -3.4088 0.0282 42 1 2.1116 -4.1022 -1.5425 43 1 3.4610 -2.9453 -1.4480 44 1 0.2364 -4.3135 -2.2867 45 1 -0.0320 -4.2628 -0.5277 46 1 -1.9097 -5.0537 -3.4566 47 1 -5.5776 -3.9048 -3.4350 48 1 -4.4397 -4.9066 -4.3676 49 1 -5.0040 -6.2291 -1.9366 50 1 -8.3515 -9.0752 -2.9651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603208110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:28 Heat of formation + Delta-G solvation = 103.036023 kcal Electronic energy + Delta-G solvation = -29907.692302 eV Core-core repulsion = 25973.832390 eV Total energy + Delta-G solvation = -3933.859911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -44.25437 -42.07331 -39.25782 -37.04751 -35.98622 -35.33696 -33.79499 -33.65159 -31.92987 -31.59995 -29.43466 -28.53722 -27.79711 -26.57067 -24.38797 -23.97623 -22.94154 -22.54004 -22.18591 -21.18786 -19.95731 -19.68988 -18.60603 -18.08838 -17.70636 -17.19577 -16.60532 -16.30129 -15.97596 -15.81972 -15.69260 -15.44415 -15.11223 -14.95873 -14.73181 -14.43985 -14.31270 -14.15383 -14.07836 -13.74649 -13.36860 -13.24026 -13.16150 -12.90107 -12.80887 -12.77097 -12.54657 -12.47579 -12.22828 -12.11183 -11.83320 -11.80189 -11.65183 -11.39711 -11.10865 -11.02896 -11.01493 -10.86286 -10.39125 -10.20052 -9.47667 -9.31595 -8.01621 -5.35247 0.60148 1.25421 1.35423 1.41772 1.45702 1.47436 1.51286 1.99973 2.48711 3.19922 3.29036 3.41983 3.69263 3.72738 3.76007 3.82273 3.83476 3.98332 4.00918 4.17979 4.19305 4.24594 4.31150 4.46517 4.51035 4.51503 4.55405 4.59601 4.68550 4.74645 4.84451 4.86272 4.90477 4.95870 5.05882 5.13096 5.15405 5.15858 5.20822 5.29758 5.34369 5.40589 5.41880 5.56383 5.59575 5.72038 5.75841 6.21777 6.29399 7.06135 7.08234 7.54078 7.80864 8.01721 9.19541 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026331 B = 0.002299 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.131819 B =12178.511903 C =12370.352831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.159 4.159 7 C -0.118 4.118 8 C 0.157 3.843 9 H 0.058 0.942 10 N -0.592 5.592 11 C 0.045 3.955 12 C 0.483 3.517 13 O -0.536 6.536 14 C 0.090 3.910 15 N -0.279 5.279 16 C -0.015 4.015 17 C -0.046 4.046 18 C 0.241 3.759 19 N -0.751 5.751 20 C -0.232 4.232 21 H 0.066 0.934 22 C -0.060 4.060 23 N -0.980 5.980 24 Si 0.953 3.047 25 H -0.289 1.289 26 H -0.288 1.288 27 H -0.255 1.255 28 N -0.304 5.304 29 N -0.091 5.091 30 H 0.020 0.980 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.183 0.817 45 H 0.151 0.849 46 H 0.238 0.762 47 H 0.028 0.972 48 H 0.069 0.931 49 H 0.363 0.637 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.645 12.568 6.379 41.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.117 4.117 3 H 0.093 0.907 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.195 4.195 7 C -0.155 4.155 8 C 0.054 3.946 9 H 0.076 0.924 10 N -0.326 5.326 11 C -0.096 4.096 12 C 0.269 3.731 13 O -0.413 6.413 14 C -0.033 4.033 15 N -0.073 5.073 16 C -0.166 4.166 17 C -0.184 4.184 18 C 0.114 3.886 19 N -0.397 5.397 20 C -0.362 4.362 21 H 0.084 0.916 22 C -0.252 4.252 23 N -0.631 5.631 24 Si 0.781 3.219 25 H -0.216 1.216 26 H -0.214 1.214 27 H -0.180 1.180 28 N -0.172 5.172 29 N -0.070 5.070 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.201 0.799 45 H 0.168 0.832 46 H 0.254 0.746 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.196 0.804 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 37.916 13.976 7.357 41.074 hybrid contribution -0.458 -0.713 0.125 0.856 sum 37.458 13.263 7.483 40.436 Atomic orbital electron populations 1.22205 0.95734 1.01277 0.99299 1.21565 0.94658 0.99701 0.95787 0.90655 1.21504 0.96728 1.00101 0.96201 1.21501 0.93859 1.00999 0.98913 1.22578 1.01469 1.02666 0.92831 1.21776 0.91142 1.02782 0.99807 1.21066 0.95459 0.81250 0.96809 0.92406 1.47738 1.06098 1.08083 1.70726 1.22803 0.95251 0.88647 1.02880 1.20503 0.83130 0.90662 0.78762 1.90971 1.56564 1.45779 1.47945 1.22469 0.73514 0.97192 1.10164 1.47077 1.09140 1.31658 1.19378 1.23925 0.92078 1.03023 0.97582 1.22261 0.95934 1.01826 0.98361 1.18877 0.89514 0.87008 0.93238 1.42665 1.38856 1.29732 1.28466 1.19053 1.06383 1.05296 1.05497 0.91630 1.25419 0.98746 0.98702 1.02285 1.69859 1.28313 1.22238 1.42661 0.85439 0.79171 0.77224 0.80085 1.21574 1.21444 1.17972 1.75060 1.14716 1.16153 1.11261 1.78257 0.92741 1.16846 1.19147 0.96126 0.92754 0.93755 0.93318 0.92397 0.92451 0.91382 0.90498 0.87059 0.90152 0.89497 0.90206 0.88708 0.87285 0.79947 0.83173 0.74569 0.95355 0.91330 0.80428 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 7.27 71.98 0.52 -2.60 16 2 C -0.10 -1.51 2.54 -10.79 -0.03 -1.54 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.11 -1.33 5.04 30.59 0.15 -1.18 16 5 C -0.12 -0.82 5.92 30.59 0.18 -0.64 16 6 C -0.16 -0.48 5.14 30.59 0.16 -0.33 16 7 C -0.12 -0.58 4.95 30.59 0.15 -0.43 16 8 C 0.16 1.85 2.61 44.99 0.12 1.97 16 9 H 0.06 0.95 8.07 -2.39 -0.02 0.93 16 10 N -0.59 -5.74 2.23 -831.31 -1.86 -7.60 16 11 C 0.04 0.01 7.94 127.77 1.01 1.03 16 12 C 0.48 8.24 6.33 87.66 0.55 8.79 16 13 O -0.54 -15.11 10.50 -3.04 -0.03 -15.14 16 14 C 0.09 1.08 5.43 85.63 0.47 1.55 16 15 N -0.28 -7.06 3.19 -351.47 -1.12 -8.18 16 16 C -0.02 -0.39 11.50 83.49 0.96 0.57 16 17 C -0.05 -1.70 6.62 41.60 0.28 -1.42 16 18 C 0.24 10.01 6.82 85.63 0.58 10.60 16 19 N -0.75 -37.39 5.40 -347.18 -1.87 -39.26 16 20 C -0.23 -13.60 10.47 84.03 0.88 -12.72 16 21 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 22 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 23 N -0.98 -63.72 13.97 21.65 0.30 -63.41 16 24 Si 0.95 47.35 27.74 68.60 1.90 49.25 16 25 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.25 -11.50 6.52 99.48 0.65 -10.85 16 28 N -0.30 -12.77 12.41 -48.60 -0.60 -13.37 16 29 N -0.09 -3.27 12.15 37.02 0.45 -2.82 16 30 H 0.02 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.05 1.51 5.20 -4.86 -0.03 1.48 16 32 H 0.04 1.29 6.72 -2.39 -0.02 1.28 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.75 6.94 -2.38 -0.02 0.73 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.11 0.05 3.02 -5.63 -0.02 0.04 16 39 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.09 0.19 7.32 -2.39 -0.02 0.18 16 41 H 0.08 -0.07 6.28 -2.39 -0.01 -0.08 16 42 H 0.09 -0.42 6.38 -2.39 -0.02 -0.44 16 43 H 0.11 -0.27 4.90 -2.39 -0.01 -0.28 16 44 H 0.18 0.29 7.38 -2.39 -0.02 0.27 16 45 H 0.15 1.04 8.09 -2.39 -0.02 1.02 16 46 H 0.24 3.64 8.06 -2.91 -0.02 3.62 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 48 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.36 17.82 5.52 -92.71 -0.51 17.31 16 50 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -89.35 375.91 3.99 -85.36 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.37 Total: 14.68 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.46 Total: 0.50 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -4.70 Total: -134.65 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.03 Total: -15.14 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.90 Total: 49.25 kcal Total: -89.35 3.99 -85.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603208110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.391 kcal (2) G-P(sol) polarization free energy of solvation -89.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds