Wall clock time and date at job start Wed Apr 1 2020 01:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47573 * 2 1 4 4 N 1.46496 * 109.47083 * 120.00635 * 2 1 3 5 5 N 1.39897 * 125.74685 * 299.99418 * 4 2 1 6 6 C 1.30289 * 109.23502 * 179.73711 * 5 4 2 7 7 C 1.41487 * 108.18668 * 0.41529 * 6 5 4 8 8 C 1.46774 * 126.51764 * 179.85748 * 7 6 5 9 9 O 1.21689 * 119.99898 * 204.03244 * 8 7 6 10 10 N 1.34779 * 119.99659 * 24.02718 * 8 7 6 11 11 C 1.46970 * 120.58800 * 184.28091 * 10 8 7 12 12 C 1.53374 * 108.77452 * 235.28944 * 11 10 8 13 13 H 1.09005 * 109.60712 * 70.24127 * 12 11 10 14 14 C 1.52997 * 109.60769 * 190.74506 * 12 11 10 15 15 N 1.46961 * 108.63723 * 310.49605 * 12 11 10 16 16 C 1.36937 * 120.59259 * 235.24879 * 15 12 11 17 17 H 1.08004 * 120.00039 * 56.36534 * 16 15 12 18 18 C 1.38809 * 120.00161 * 236.36665 * 16 15 12 19 19 N 1.31624 * 119.99650 * 24.10632 * 18 16 15 20 20 Si 1.86798 * 120.00257 * 204.09923 * 18 16 15 21 21 H 1.48500 * 109.47191 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46938 * 120.00048 * 20 18 16 23 23 H 1.48490 * 109.47574 * 239.99928 * 20 18 16 24 24 C 1.46961 * 118.81440 * 55.22278 * 15 12 11 25 25 H 1.08998 * 109.60825 * 64.52156 * 24 15 12 26 26 C 1.53000 * 109.61188 * 185.03084 * 24 15 12 27 27 C 1.47294 * 120.81505 * 4.44290 * 10 8 7 28 28 C 1.34843 * 125.75045 * 120.00031 * 4 2 1 29 29 N 1.38014 * 126.44683 * 359.97173 * 28 4 2 30 30 H 1.09006 * 109.46569 * 300.00170 * 1 2 3 31 31 H 1.09003 * 109.47111 * 59.99329 * 1 2 3 32 32 H 1.08996 * 109.47576 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46950 * 239.99990 * 2 1 3 34 34 H 1.09003 * 109.47450 * 300.00463 * 3 2 1 35 35 H 1.08999 * 109.46990 * 60.00015 * 3 2 1 36 36 H 1.09000 * 109.47425 * 180.02562 * 3 2 1 37 37 H 1.08000 * 125.90497 * 180.27927 * 6 5 4 38 38 H 1.08998 * 109.60808 * 115.46193 * 11 10 8 39 39 H 1.08993 * 109.61315 * 355.12158 * 11 10 8 40 40 H 1.09011 * 109.46984 * 60.00602 * 14 12 11 41 41 H 1.09001 * 109.47417 * 179.97438 * 14 12 11 42 42 H 1.08993 * 109.47785 * 300.00301 * 14 12 11 43 43 H 0.97000 * 119.99687 * 184.88747 * 19 18 16 44 44 H 1.09003 * 109.46931 * 51.68791 * 26 24 15 45 45 H 1.09000 * 109.47309 * 171.68467 * 26 24 15 46 46 H 1.09000 * 109.47042 * 291.68753 * 26 24 15 47 47 H 1.08997 * 109.54424 * 4.95997 * 27 10 8 48 48 H 1.09003 * 109.71774 * 244.59669 * 27 10 8 49 49 H 0.96996 * 120.00361 * 180.02562 * 29 28 4 50 50 H 0.96999 * 119.99733 * 0.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7556 -0.3191 2.5189 6 6 2.3419 -1.1582 3.3250 7 6 3.0270 -2.1172 2.5422 8 6 3.8234 -3.2445 3.0415 9 8 4.6968 -3.7279 2.3456 10 7 3.5873 -3.7441 4.2708 11 6 4.4370 -4.8097 4.8208 12 6 3.5468 -5.9914 5.2255 13 1 3.1531 -6.4756 4.3318 14 6 4.3653 -6.9955 6.0395 15 7 2.4351 -5.4840 6.0419 16 6 2.1984 -5.9934 7.2907 17 1 2.9792 -5.9789 8.0368 18 6 0.9550 -6.5286 7.5978 19 7 0.1798 -6.9855 6.6371 20 14 0.3818 -6.6004 9.3742 21 1 1.4299 -6.0267 10.2561 22 1 -0.8716 -5.8179 9.5219 23 1 0.1313 -8.0132 9.7568 24 6 1.5824 -4.4196 5.4943 25 1 1.0488 -4.7920 4.6198 26 6 0.5798 -3.9668 6.5576 27 6 2.4725 -3.2379 5.0897 28 6 2.7968 -1.7917 1.2074 29 7 3.2752 -2.4690 0.1041 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 2.3120 -1.1259 4.4041 38 1 4.9705 -4.4374 5.6953 39 1 5.1532 -5.1331 4.0656 40 1 4.7504 -6.5088 6.9357 41 1 3.7306 -7.8340 6.3263 42 1 5.1978 -7.3590 5.4372 43 1 -0.7165 -7.2940 6.8427 44 1 1.1107 -3.7277 7.4791 45 1 0.0496 -3.0826 6.2039 46 1 -0.1350 -4.7675 6.7473 47 1 1.8895 -2.5225 4.5097 48 1 2.8637 -2.7518 5.9834 49 1 3.8308 -3.2554 0.2210 50 1 3.0557 -2.1586 -0.7883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880455998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:08 Heat of formation + Delta-G solvation = 81.272810 kcal Electronic energy + Delta-G solvation = -30889.303761 eV Core-core repulsion = 26954.500126 eV Total energy + Delta-G solvation = -3934.803635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.39320 -39.12547 -37.06890 -35.84870 -34.79607 -33.86174 -32.94032 -31.19657 -30.22251 -28.74540 -27.61756 -27.60485 -26.08840 -25.59386 -23.83673 -23.20903 -21.76233 -20.43915 -19.87987 -19.61870 -18.81290 -17.71659 -16.77789 -16.14687 -15.87182 -15.53644 -15.33978 -14.83346 -14.71686 -14.56588 -14.38291 -14.23543 -13.79742 -13.38148 -13.18310 -13.08836 -12.83281 -12.54987 -12.42152 -12.26760 -11.85935 -11.70143 -11.62069 -11.51756 -11.46319 -11.30077 -11.11475 -10.81126 -10.68624 -10.62838 -10.46088 -10.41095 -10.26740 -9.96335 -9.82815 -9.64384 -9.24332 -8.86494 -8.28190 -7.97347 -7.64610 -6.36559 -5.66200 -3.56977 1.98803 2.19261 2.45353 3.31638 3.42968 3.45717 3.56739 3.63876 3.92758 4.18421 4.46148 4.57895 4.62200 4.85049 5.16590 5.20896 5.21508 5.27487 5.33794 5.42217 5.46544 5.52588 5.58353 5.83350 5.86012 5.87270 5.90482 6.12038 6.16323 6.26013 6.30506 6.36382 6.47175 6.51980 6.60904 6.64221 6.70636 6.74625 6.88375 7.13474 7.20713 7.29101 7.37926 7.42244 7.43598 7.58626 7.86746 7.89010 8.16476 8.65852 8.83521 9.21948 9.73097 10.54169 11.15250 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003415 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.835169 B = 8196.740761 C = 9218.872490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.160 3.840 3 C -0.160 4.160 4 N -0.394 5.394 5 N -0.305 5.305 6 C 0.103 3.897 7 C -0.358 4.358 8 C 0.599 3.401 9 O -0.582 6.582 10 N -0.592 5.592 11 C 0.102 3.898 12 C 0.157 3.843 13 H 0.027 0.973 14 C -0.125 4.125 15 N -0.576 5.576 16 C -0.268 4.268 17 H 0.052 0.948 18 C 0.043 3.957 19 N -0.866 5.866 20 Si 0.874 3.126 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.289 1.289 24 C 0.181 3.819 25 H 0.029 0.971 26 C -0.138 4.138 27 C 0.071 3.929 28 C 0.425 3.575 29 N -0.835 5.835 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.199 0.801 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.035 0.965 43 H 0.253 0.747 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.429 0.571 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 13.614 -13.155 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.058 3.942 3 C -0.218 4.218 4 N -0.183 5.183 5 N -0.124 5.124 6 C -0.086 4.086 7 C -0.378 4.378 8 C 0.390 3.610 9 O -0.465 6.465 10 N -0.322 5.322 11 C -0.022 4.022 12 C 0.051 3.949 13 H 0.045 0.955 14 C -0.183 4.183 15 N -0.301 5.301 16 C -0.397 4.397 17 H 0.069 0.931 18 C -0.160 4.160 19 N -0.505 5.505 20 Si 0.701 3.299 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.216 1.216 24 C 0.074 3.926 25 H 0.047 0.953 26 C -0.196 4.196 27 C -0.053 4.053 28 C 0.192 3.808 29 N -0.385 5.385 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.215 0.785 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.264 0.736 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.776 14.326 -13.644 19.864 hybrid contribution -0.010 -0.995 0.612 1.168 sum 1.766 13.332 -13.032 18.727 Atomic orbital electron populations 1.22131 0.93106 1.03156 1.03494 1.21165 0.95790 0.93869 0.83351 1.22121 1.01693 0.94464 1.03485 1.48460 1.41814 1.21693 1.06331 1.77050 1.26454 1.23899 0.85007 1.24191 0.93170 0.91165 1.00026 1.19314 1.20865 1.07534 0.90067 1.17007 0.81909 0.81260 0.80861 1.90642 1.35320 1.63293 1.57237 1.47747 1.31122 1.37519 1.15764 1.22248 0.93417 0.88840 0.97669 1.20865 0.89148 0.91102 0.93827 0.95543 1.21623 0.98086 0.99594 0.99034 1.43945 1.31911 1.38884 1.15316 1.18615 0.97998 1.35266 0.87851 0.93080 1.25546 0.99827 0.94320 0.96321 1.70265 1.08716 1.39212 1.32263 0.86747 0.78942 0.77472 0.86714 1.19653 1.21091 1.21571 1.20601 0.90137 0.86608 0.95259 0.95312 1.21870 0.99337 0.99731 0.98617 1.23217 0.88727 0.99042 0.94328 1.17993 0.88592 0.85405 0.88797 1.41634 1.58712 1.34011 1.04094 0.90662 0.90877 0.92010 0.89224 0.90880 0.90705 0.92171 0.78513 0.92317 0.90334 0.92926 0.91527 0.94587 0.93724 0.92529 0.95450 0.90229 0.89277 0.91829 0.73581 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.45 37.16 0.35 -0.91 16 2 C 0.16 1.35 3.67 -67.93 -0.25 1.10 16 3 C -0.16 -1.18 9.45 37.16 0.35 -0.83 16 4 N -0.39 -4.88 3.27 -53.56 -0.17 -5.06 16 5 N -0.31 -4.35 12.30 30.88 0.38 -3.97 16 6 C 0.10 1.53 9.68 -16.97 -0.16 1.36 16 7 C -0.36 -5.86 5.76 -104.81 -0.60 -6.46 16 8 C 0.60 11.30 7.63 -12.81 -0.10 11.20 16 9 O -0.58 -11.90 14.96 5.20 0.08 -11.82 16 10 N -0.59 -11.29 2.96 -173.72 -0.51 -11.81 16 11 C 0.10 2.00 5.90 -3.59 -0.02 1.98 16 12 C 0.16 3.44 3.65 -67.49 -0.25 3.19 16 13 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 14 C -0.13 -2.51 8.20 37.16 0.30 -2.20 16 15 N -0.58 -13.75 2.73 -157.03 -0.43 -14.18 16 16 C -0.27 -6.85 6.45 -15.06 -0.10 -6.95 16 17 H 0.05 1.34 7.29 -52.48 -0.38 0.96 16 18 C 0.04 1.13 3.13 -17.43 -0.05 1.07 16 19 N -0.87 -24.02 12.39 55.49 0.69 -23.34 16 20 Si 0.87 20.33 29.62 -169.99 -5.04 15.30 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.18 3.98 3.37 -67.49 -0.23 3.75 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 C -0.14 -2.92 7.89 37.16 0.29 -2.63 16 27 C 0.07 1.30 4.80 -3.42 -0.02 1.28 16 28 C 0.43 5.92 7.97 -153.78 -1.23 4.70 16 29 N -0.83 -9.19 9.02 31.40 0.28 -8.91 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.55 6.77 -51.93 -0.35 0.20 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.20 2.60 5.86 -52.49 -0.31 2.29 16 38 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.08 1.53 6.98 -51.93 -0.36 1.16 16 40 H 0.05 1.03 7.48 -51.92 -0.39 0.64 16 41 H 0.07 1.47 7.75 -51.93 -0.40 1.07 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 44 H 0.06 1.20 7.55 -51.93 -0.39 0.81 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 1.93 5.37 -51.93 -0.28 1.65 16 47 H 0.09 1.46 3.52 -51.93 -0.18 1.27 16 48 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 49 H 0.43 5.29 7.42 -40.82 -0.30 4.99 16 50 H 0.40 2.89 7.61 -40.82 -0.31 2.58 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -31.52 385.12 -8.49 -40.02 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.87 Total: 8.31 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.70 Total: 9.65 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.23 Total: -67.26 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.04 Total: 15.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.52 -8.49 -40.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.289 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds