Wall clock time and date at job start Wed Apr 1 2020 01:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47573 * 2 1 4 4 N 1.46496 * 109.47083 * 120.00635 * 2 1 3 5 5 N 1.39897 * 125.74685 * 299.99418 * 4 2 1 6 6 C 1.30289 * 109.23502 * 179.73711 * 5 4 2 7 7 C 1.41487 * 108.18668 * 0.41529 * 6 5 4 8 8 C 1.46774 * 126.51764 * 179.85748 * 7 6 5 9 9 O 1.21689 * 119.99898 * 204.03244 * 8 7 6 10 10 N 1.34779 * 119.99659 * 24.02718 * 8 7 6 11 11 C 1.46970 * 120.58800 * 184.28091 * 10 8 7 12 12 C 1.53374 * 108.77452 * 235.28944 * 11 10 8 13 13 H 1.09005 * 109.60712 * 70.24127 * 12 11 10 14 14 C 1.52997 * 109.60769 * 190.74506 * 12 11 10 15 15 N 1.46961 * 108.63723 * 310.49605 * 12 11 10 16 16 C 1.36937 * 120.59259 * 235.24879 * 15 12 11 17 17 H 1.08004 * 120.00039 * 56.36534 * 16 15 12 18 18 C 1.38809 * 120.00161 * 236.36665 * 16 15 12 19 19 N 1.31624 * 119.99650 * 24.10632 * 18 16 15 20 20 Si 1.86798 * 120.00257 * 204.09923 * 18 16 15 21 21 H 1.48500 * 109.47191 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46938 * 120.00048 * 20 18 16 23 23 H 1.48490 * 109.47574 * 239.99928 * 20 18 16 24 24 C 1.46961 * 118.81440 * 55.22278 * 15 12 11 25 25 H 1.08998 * 109.60825 * 64.52156 * 24 15 12 26 26 C 1.53000 * 109.61188 * 185.03084 * 24 15 12 27 27 C 1.47294 * 120.81505 * 4.44290 * 10 8 7 28 28 C 1.34843 * 125.75045 * 120.00031 * 4 2 1 29 29 N 1.38014 * 126.44683 * 359.97173 * 28 4 2 30 30 H 1.09006 * 109.46569 * 300.00170 * 1 2 3 31 31 H 1.09003 * 109.47111 * 59.99329 * 1 2 3 32 32 H 1.08996 * 109.47576 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46950 * 239.99990 * 2 1 3 34 34 H 1.09003 * 109.47450 * 300.00463 * 3 2 1 35 35 H 1.08999 * 109.46990 * 60.00015 * 3 2 1 36 36 H 1.09000 * 109.47425 * 180.02562 * 3 2 1 37 37 H 1.08000 * 125.90497 * 180.27927 * 6 5 4 38 38 H 1.08998 * 109.60808 * 115.46193 * 11 10 8 39 39 H 1.08993 * 109.61315 * 355.12158 * 11 10 8 40 40 H 1.09011 * 109.46984 * 60.00602 * 14 12 11 41 41 H 1.09001 * 109.47417 * 179.97438 * 14 12 11 42 42 H 1.08993 * 109.47785 * 300.00301 * 14 12 11 43 43 H 0.97000 * 119.99687 * 184.88747 * 19 18 16 44 44 H 1.09003 * 109.46931 * 51.68791 * 26 24 15 45 45 H 1.09000 * 109.47309 * 171.68467 * 26 24 15 46 46 H 1.09000 * 109.47042 * 291.68753 * 26 24 15 47 47 H 1.08997 * 109.54424 * 4.95997 * 27 10 8 48 48 H 1.09003 * 109.71774 * 244.59669 * 27 10 8 49 49 H 0.96996 * 120.00361 * 180.02562 * 29 28 4 50 50 H 0.96999 * 119.99733 * 0.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 7 1.7556 -0.3191 2.5189 6 6 2.3419 -1.1582 3.3250 7 6 3.0270 -2.1172 2.5422 8 6 3.8234 -3.2445 3.0415 9 8 4.6968 -3.7279 2.3456 10 7 3.5873 -3.7441 4.2708 11 6 4.4370 -4.8097 4.8208 12 6 3.5468 -5.9914 5.2255 13 1 3.1531 -6.4756 4.3318 14 6 4.3653 -6.9955 6.0395 15 7 2.4351 -5.4840 6.0419 16 6 2.1984 -5.9934 7.2907 17 1 2.9792 -5.9789 8.0368 18 6 0.9550 -6.5286 7.5978 19 7 0.1798 -6.9855 6.6371 20 14 0.3818 -6.6004 9.3742 21 1 1.4299 -6.0267 10.2561 22 1 -0.8716 -5.8179 9.5219 23 1 0.1313 -8.0132 9.7568 24 6 1.5824 -4.4196 5.4943 25 1 1.0488 -4.7920 4.6198 26 6 0.5798 -3.9668 6.5576 27 6 2.4725 -3.2379 5.0897 28 6 2.7968 -1.7917 1.2074 29 7 3.2752 -2.4690 0.1041 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9564 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 2.3120 -1.1259 4.4041 38 1 4.9705 -4.4374 5.6953 39 1 5.1532 -5.1331 4.0656 40 1 4.7504 -6.5088 6.9357 41 1 3.7306 -7.8340 6.3263 42 1 5.1978 -7.3590 5.4372 43 1 -0.7165 -7.2940 6.8427 44 1 1.1107 -3.7277 7.4791 45 1 0.0496 -3.0826 6.2039 46 1 -0.1350 -4.7675 6.7473 47 1 1.8895 -2.5225 4.5097 48 1 2.8637 -2.7518 5.9834 49 1 3.8308 -3.2554 0.2210 50 1 3.0557 -2.1586 -0.7883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880455998.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:07 Heat of formation + Delta-G solvation = 61.283921 kcal Electronic energy + Delta-G solvation = -30890.170544 eV Core-core repulsion = 26954.500126 eV Total energy + Delta-G solvation = -3935.670418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.47924 -40.60820 -38.70530 -36.70643 -35.89264 -35.39614 -34.61531 -33.07671 -31.25238 -29.96411 -29.34857 -28.19427 -27.60006 -27.28420 -25.55576 -24.16189 -23.06117 -22.02783 -21.29366 -20.90800 -20.20910 -18.69697 -18.26265 -17.55093 -17.32948 -16.82035 -16.64761 -16.42355 -16.26876 -15.77242 -15.63146 -15.43358 -15.27814 -14.82329 -14.74241 -14.26734 -14.01702 -13.75717 -13.45069 -13.35087 -13.18087 -13.11107 -13.10066 -12.90729 -12.59591 -12.44869 -12.36276 -12.35903 -12.26465 -12.18040 -12.16743 -12.02381 -11.71903 -11.64734 -11.58003 -11.36355 -10.68128 -10.20032 -9.92083 -9.57287 -8.80433 -8.35076 -7.60341 -5.60016 0.87854 1.24655 1.27232 1.45393 1.52294 1.60448 2.17830 2.50210 2.58708 2.71655 3.24754 3.41614 3.58143 3.85533 3.94463 4.00889 4.07519 4.18616 4.26429 4.38391 4.39912 4.51767 4.55865 4.65381 4.69253 4.69590 4.72718 4.81799 4.82307 4.85146 4.90191 4.92998 4.98755 5.05382 5.20047 5.23363 5.24602 5.43366 5.44570 5.49464 5.63532 5.64687 5.74595 5.80443 5.87204 6.25326 6.52890 6.63428 6.66095 6.91618 7.28740 7.37548 7.80662 8.58614 9.15099 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.003415 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.835169 B = 8196.740761 C = 9218.872490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 C -0.154 4.154 4 N -0.387 5.387 5 N -0.312 5.312 6 C 0.099 3.901 7 C -0.392 4.392 8 C 0.596 3.404 9 O -0.604 6.604 10 N -0.600 5.600 11 C 0.114 3.886 12 C 0.153 3.847 13 H -0.007 1.007 14 C -0.114 4.114 15 N -0.589 5.589 16 C -0.265 4.265 17 H 0.048 0.952 18 C 0.007 3.993 19 N -0.904 5.904 20 Si 0.930 3.070 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.297 1.297 24 C 0.179 3.821 25 H -0.009 1.009 26 C -0.129 4.129 27 C 0.086 3.914 28 C 0.428 3.572 29 N -0.821 5.821 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.210 0.790 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.249 0.751 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.425 0.575 50 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 15.846 -14.053 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 C -0.212 4.212 4 N -0.176 5.176 5 N -0.131 5.131 6 C -0.090 4.090 7 C -0.412 4.412 8 C 0.388 3.612 9 O -0.488 6.488 10 N -0.329 5.329 11 C -0.010 4.010 12 C 0.046 3.954 13 H 0.011 0.989 14 C -0.172 4.172 15 N -0.314 5.314 16 C -0.395 4.395 17 H 0.065 0.935 18 C -0.193 4.193 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.224 1.224 24 C 0.073 3.927 25 H 0.008 0.992 26 C -0.187 4.187 27 C -0.037 4.037 28 C 0.192 3.808 29 N -0.371 5.371 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.129 0.871 48 H 0.096 0.904 49 H 0.259 0.741 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.112 16.599 -14.572 22.188 hybrid contribution -0.115 -1.680 0.727 1.834 sum 1.996 14.919 -13.845 20.451 Atomic orbital electron populations 1.22110 0.92541 1.02546 1.04215 1.21667 0.96305 0.94625 0.82680 1.22090 1.01205 0.93666 1.04195 1.48775 1.41001 1.21144 1.06699 1.76990 1.26201 1.23899 0.85971 1.24316 0.93043 0.90923 1.00685 1.19270 1.22467 1.07796 0.91625 1.17372 0.81834 0.81624 0.80321 1.90614 1.36333 1.64271 1.57626 1.47814 1.31282 1.37565 1.16237 1.22013 0.92853 0.88114 0.98020 1.20938 0.89334 0.92468 0.92628 0.98946 1.21503 0.98165 0.98096 0.99441 1.44220 1.32446 1.39630 1.15132 1.18738 0.97861 1.34513 0.88395 0.93466 1.26078 0.99987 0.94175 0.99104 1.70363 1.08885 1.41035 1.34124 0.85865 0.78623 0.76826 0.83004 1.18669 1.20912 1.22372 1.20591 0.90640 0.87502 0.94002 0.99169 1.21746 0.98613 0.99897 0.98465 1.23070 0.88124 0.97417 0.95136 1.18063 0.88274 0.85676 0.88836 1.41609 1.57722 1.33283 1.04463 0.92323 0.87782 0.93231 0.86445 0.87844 0.92316 0.92828 0.77401 0.91258 0.90268 0.92419 0.94301 0.91633 0.94128 0.92544 0.92195 0.93322 0.87126 0.90394 0.74110 0.75349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.45 71.98 0.68 -1.39 16 2 C 0.15 2.08 3.67 44.99 0.17 2.24 16 3 C -0.15 -1.84 9.45 71.98 0.68 -1.17 16 4 N -0.39 -8.86 3.27 -323.35 -1.06 -9.92 16 5 N -0.31 -8.43 12.30 -56.22 -0.69 -9.13 16 6 C 0.10 2.81 9.68 85.72 0.83 3.64 16 7 C -0.39 -12.47 5.76 -19.99 -0.12 -12.58 16 8 C 0.60 22.25 7.63 86.47 0.66 22.91 16 9 O -0.60 -24.55 14.96 -4.31 -0.06 -24.62 16 10 N -0.60 -22.66 2.96 -821.75 -2.43 -25.10 16 11 C 0.11 4.43 5.90 86.42 0.51 4.94 16 12 C 0.15 6.81 3.65 45.03 0.16 6.98 16 13 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 14 C -0.11 -4.58 8.20 71.98 0.59 -3.99 16 15 N -0.59 -28.59 2.73 -650.71 -1.77 -30.36 16 16 C -0.27 -13.68 6.45 84.03 0.54 -13.14 16 17 H 0.05 2.47 7.29 -2.91 -0.02 2.45 16 18 C 0.01 0.37 3.13 84.86 0.27 0.63 16 19 N -0.90 -51.61 12.39 21.65 0.27 -51.34 16 20 Si 0.93 42.16 29.62 68.60 2.03 44.20 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 24 C 0.18 7.97 3.37 45.03 0.15 8.12 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 C -0.13 -5.45 7.89 71.98 0.57 -4.88 16 27 C 0.09 3.07 4.80 86.35 0.41 3.48 16 28 C 0.43 11.26 7.97 132.69 1.06 12.32 16 29 N -0.82 -16.62 9.02 -54.57 -0.49 -17.12 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.12 1.01 6.77 -2.39 -0.02 0.99 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.21 5.13 5.86 -2.91 -0.02 5.12 16 38 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 39 H 0.08 3.05 6.98 -2.39 -0.02 3.04 16 40 H 0.06 2.23 7.48 -2.38 -0.02 2.21 16 41 H 0.04 1.74 7.75 -2.39 -0.02 1.72 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.25 13.81 8.32 -92.71 -0.77 13.04 16 44 H 0.06 2.35 7.55 -2.39 -0.02 2.33 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 2.37 5.37 -2.39 -0.01 2.36 16 47 H 0.11 3.49 3.52 -2.39 -0.01 3.48 16 48 H 0.08 2.58 8.11 -2.39 -0.02 2.56 16 49 H 0.42 10.00 7.42 -92.71 -0.69 9.31 16 50 H 0.41 4.97 7.61 -92.71 -0.71 4.26 16 Total: -1.00 -70.09 385.12 2.53 -67.57 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.42 Total: 27.69 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 7.16 Total: 28.12 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -6.18 Total: -142.96 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.09 2.53 -67.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880455998.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.851 kcal (2) G-P(sol) polarization free energy of solvation -70.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds