Wall clock time and date at job start Tue Mar 31 2020 23:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49663 * 2 1 4 4 C 1.53043 * 109.49801 * 239.94040 * 2 1 3 5 5 C 1.53041 * 109.54165 * 178.71566 * 4 2 1 6 6 C 1.53188 * 109.33744 * 61.31374 * 5 4 2 7 7 N 1.46927 * 108.77954 * 305.38193 * 6 5 4 8 8 C 1.34780 * 120.63245 * 233.63453 * 7 6 5 9 9 O 1.21593 * 119.99917 * 186.00748 * 8 7 6 10 10 N 1.34774 * 120.00020 * 6.00243 * 8 7 6 11 11 C 1.40191 * 120.00031 * 186.10245 * 10 8 7 12 12 C 1.40404 * 125.97266 * 359.97438 * 11 10 8 13 13 C 1.35239 * 107.86848 * 180.02562 * 12 11 10 14 14 N 1.34968 * 107.85762 * 359.97438 * 13 12 11 15 15 C 1.46506 * 125.97561 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47220 * 125.00086 * 15 14 13 17 17 H 1.08003 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00191 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47341 * 89.99652 * 20 18 16 22 22 H 1.48504 * 109.47063 * 209.99624 * 20 18 16 23 23 H 1.48503 * 109.47194 * 329.99890 * 20 18 16 24 24 N 1.31215 * 125.97182 * 179.69604 * 11 10 8 25 25 C 1.46924 * 118.73833 * 53.61013 * 7 6 5 26 26 H 1.08997 * 109.58912 * 66.17641 * 25 7 6 27 27 C 1.52995 * 109.70611 * 186.53562 * 25 7 6 28 28 C 1.53008 * 109.47202 * 65.03685 * 27 25 7 29 29 N 1.46900 * 109.46995 * 186.21060 * 28 27 25 30 30 H 1.08999 * 109.47120 * 299.99371 * 1 2 3 31 31 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47328 * 59.99807 * 1 2 3 33 33 H 1.09003 * 109.45983 * 298.70558 * 4 2 1 34 34 H 1.08999 * 109.46258 * 58.66142 * 4 2 1 35 35 H 1.09002 * 109.46738 * 301.36144 * 5 4 2 36 36 H 1.08997 * 109.49655 * 181.28298 * 5 4 2 37 37 H 1.09000 * 109.58448 * 185.59716 * 6 5 4 38 38 H 1.09001 * 109.70533 * 65.24350 * 6 5 4 39 39 H 0.97001 * 119.99641 * 6.09194 * 10 8 7 40 40 H 1.07994 * 126.06283 * 0.02562 * 12 11 10 41 41 H 1.07998 * 126.07467 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.46915 * 245.00255 * 15 14 13 43 43 H 1.09005 * 109.46918 * 5.00431 * 15 14 13 44 44 H 0.97004 * 120.00105 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.47235 * 185.03137 * 27 25 7 46 46 H 1.09002 * 109.47338 * 305.03659 * 27 25 7 47 47 H 1.09003 * 109.46297 * 306.21170 * 28 27 25 48 48 H 1.08998 * 109.46863 * 66.20880 * 28 27 25 49 49 H 1.00901 * 110.99709 * 56.04971 * 29 28 27 50 50 H 1.00905 * 110.99361 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2486 5 6 3.5708 -0.6953 -1.2659 6 6 4.1052 -1.4267 -0.0306 7 7 3.5046 -0.8289 1.1697 8 6 4.2812 -0.3851 2.1779 9 8 3.7721 0.0067 3.2103 10 7 5.6220 -0.3756 2.0418 11 6 6.4349 -0.0361 3.1324 12 6 5.9881 0.3137 4.4167 13 6 7.0756 0.5699 5.1788 14 7 8.1709 0.3900 4.4110 15 6 9.5609 0.5618 4.8407 16 6 10.3331 -0.7016 4.5603 17 1 9.8381 -1.5476 4.1069 18 6 11.6715 -0.7773 4.8826 19 7 12.2741 0.2528 5.4352 20 14 12.6289 -2.3431 4.5344 21 1 13.2159 -2.2718 3.1722 22 1 13.7163 -2.4912 5.5348 23 1 11.7156 -3.5110 4.6193 24 7 7.7464 0.0053 3.1328 25 6 2.0413 -0.7235 1.2498 26 1 1.6053 -1.7213 1.2984 27 6 1.6487 0.0692 2.4980 28 6 2.1479 1.5094 2.3656 29 7 1.9032 2.2300 3.6221 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.6966 -1.7568 -1.2360 34 1 1.6581 -0.2238 -2.1390 35 1 3.9159 0.3386 -1.2543 36 1 3.9333 -1.1902 -2.1669 37 1 5.1895 -1.3245 0.0139 38 1 3.8396 -2.4824 -0.0850 39 1 6.0246 -0.6038 1.1893 40 1 4.9588 0.3683 4.7388 41 1 7.0688 0.8652 6.2176 42 1 10.0102 1.3911 4.2945 43 1 9.5871 0.7740 5.9096 44 1 13.2159 0.1996 5.6616 45 1 0.5636 0.0689 2.6022 46 1 2.0983 -0.3918 3.3775 47 1 3.2167 1.5051 2.1513 48 1 1.6164 2.0049 1.5531 49 1 2.3325 1.7539 4.4014 50 1 2.2249 3.1844 3.5601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904346912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:18 Heat of formation + Delta-G solvation = 80.572280 kcal Electronic energy + Delta-G solvation = -30261.962831 eV Core-core repulsion = 26327.128819 eV Total energy + Delta-G solvation = -3934.834012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.39361 -40.22323 -38.07594 -36.04526 -34.29759 -33.81092 -33.20887 -32.38401 -30.88549 -29.34394 -28.61208 -26.71584 -26.66541 -24.99302 -23.06019 -22.93742 -21.72414 -21.46820 -20.49681 -19.55071 -19.16331 -17.68946 -16.71967 -16.56809 -16.35631 -15.75516 -15.63918 -15.19786 -14.93869 -14.83262 -14.54142 -14.37889 -14.10651 -13.85835 -13.63873 -13.38111 -12.91488 -12.88163 -12.66835 -12.36183 -12.27491 -12.23386 -11.98552 -11.89383 -11.69305 -11.35517 -11.25291 -11.08574 -11.01073 -10.86432 -10.70114 -10.53143 -10.32209 -10.25951 -9.86056 -9.49523 -8.98959 -8.73553 -8.64018 -8.40463 -8.09835 -7.41376 -6.25321 -4.30379 2.32479 2.64090 3.06859 3.22533 3.28363 3.32420 3.39055 3.81076 4.04406 4.31058 4.39229 4.42305 4.45909 4.63163 4.74861 4.91727 5.02951 5.09289 5.10494 5.25462 5.28545 5.36479 5.40489 5.44163 5.48869 5.56536 5.61114 5.71754 5.74212 5.79193 5.81120 5.86191 5.92610 6.05604 6.16034 6.24731 6.28645 6.51604 6.67944 6.68860 6.81874 6.97420 7.08253 7.33663 7.49551 7.64431 7.68361 7.79417 7.93792 8.05441 8.60109 8.65828 8.79934 9.35264 10.83373 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002694 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.536992 B =10389.961509 C =11474.699954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.623 5.623 8 C 0.717 3.283 9 O -0.555 6.555 10 N -0.646 5.646 11 C 0.276 3.724 12 C -0.286 4.286 13 C 0.050 3.950 14 N -0.320 5.320 15 C 0.259 3.741 16 C -0.528 4.528 17 H 0.068 0.932 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.908 3.092 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.309 5.309 25 C 0.174 3.826 26 H 0.072 0.928 27 C -0.125 4.125 28 C 0.078 3.922 29 N -0.848 5.848 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.403 0.597 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.267 0.733 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.346 0.654 50 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.073 -0.787 -11.862 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.015 4.015 7 N -0.361 5.361 8 C 0.419 3.581 9 O -0.432 6.432 10 N -0.299 5.299 11 C 0.022 3.978 12 C -0.317 4.317 13 C -0.100 4.100 14 N -0.102 5.102 15 C 0.141 3.859 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.140 5.140 25 C 0.070 3.930 26 H 0.090 0.910 27 C -0.162 4.162 28 C -0.053 4.053 29 N -0.377 5.377 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.240 0.760 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.159 0.841 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.848 -0.758 -11.825 24.854 hybrid contribution 1.361 -0.708 -0.278 1.559 sum -20.487 -1.467 -12.102 23.840 Atomic orbital electron populations 1.21809 0.94273 1.01978 1.02263 1.21662 0.96132 1.00498 0.94449 0.90326 1.21589 0.94952 1.00881 0.97763 1.21935 0.96424 1.01524 0.97574 1.21688 0.97802 0.97504 0.84525 1.47253 1.06312 1.64409 1.18083 1.15531 0.80224 0.78651 0.83688 1.90791 1.70901 1.52998 1.28491 1.41810 1.04138 1.71275 1.12638 1.18812 0.89445 1.01617 0.87951 1.21455 1.00177 1.17937 0.92144 1.22553 0.86788 1.02356 0.98284 1.49049 1.07944 1.47942 1.05270 1.19726 0.71291 0.98880 0.95962 1.21252 0.94605 0.99090 1.41662 0.91337 1.24945 0.97292 0.97202 0.94664 1.69919 1.11712 1.30050 1.41692 0.86330 0.79307 0.82711 0.78158 1.20357 1.20972 1.19727 1.77328 1.08199 1.25869 1.02639 1.21159 0.77305 0.98961 0.95582 0.91035 1.22202 0.99809 0.95603 0.98584 1.21867 0.98542 0.93480 0.91398 1.58874 1.66839 1.05889 1.06074 0.91783 0.92611 0.92559 0.91735 0.91645 0.91347 0.90532 0.90357 0.90916 0.75977 0.82285 0.81659 0.93825 0.92582 0.92329 0.92328 0.86868 0.94584 0.93596 0.84081 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.96 37.16 0.33 -0.62 16 2 C -0.11 -0.82 2.00 -90.50 -0.18 -1.00 16 3 H 0.08 0.71 6.19 -51.93 -0.32 0.38 16 4 C -0.11 -0.72 5.17 -26.69 -0.14 -0.86 16 5 C -0.14 -0.89 6.08 -26.61 -0.16 -1.05 16 6 C 0.11 0.86 6.43 -3.71 -0.02 0.84 16 7 N -0.62 -6.49 2.93 -170.91 -0.50 -6.99 16 8 C 0.72 9.98 6.71 -86.92 -0.58 9.39 16 9 O -0.56 -8.47 7.04 5.28 0.04 -8.43 16 10 N -0.65 -9.91 5.34 -15.50 -0.08 -9.99 16 11 C 0.28 5.41 8.10 -154.36 -1.25 4.16 16 12 C -0.29 -5.45 9.61 -39.83 -0.38 -5.83 16 13 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 14 N -0.32 -7.38 3.67 -62.56 -0.23 -7.61 16 15 C 0.26 6.56 6.26 -5.19 -0.03 6.53 16 16 C -0.53 -14.64 9.23 -34.44 -0.32 -14.96 16 17 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.90 -25.29 13.29 55.43 0.74 -24.55 16 20 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.31 -7.04 12.42 31.44 0.39 -6.65 16 25 C 0.17 1.62 2.66 -67.60 -0.18 1.44 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 C -0.12 -1.37 4.35 -26.73 -0.12 -1.49 16 28 C 0.08 0.93 5.00 -3.82 -0.02 0.91 16 29 N -0.85 -10.22 9.62 -10.37 -0.10 -10.32 16 30 H 0.06 0.47 6.73 -51.93 -0.35 0.12 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.62 5.59 -51.93 -0.29 0.33 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 5.32 6.34 -40.82 -0.26 5.06 16 40 H 0.16 2.88 5.93 -52.49 -0.31 2.57 16 41 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 42 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 46 H 0.11 1.53 5.67 -53.23 -0.30 1.23 16 47 H 0.04 0.51 5.16 -51.93 -0.27 0.24 16 48 H 0.05 0.52 6.61 -51.93 -0.34 0.18 16 49 H 0.35 4.45 8.54 -39.29 -0.34 4.11 16 50 H 0.33 3.68 9.08 -39.29 -0.36 3.33 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -30.58 380.87 -10.06 -40.64 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.69 Total: 12.04 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -3.35 Total: -0.16 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: 0.21 Total: -66.12 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.04 Total: -8.43 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.58 -10.06 -40.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904346912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.216 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds