Wall clock time and date at job start Tue Mar 31 2020 23:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49663 * 2 1 4 4 C 1.53043 * 109.49801 * 239.94040 * 2 1 3 5 5 C 1.53041 * 109.54165 * 178.71566 * 4 2 1 6 6 C 1.53188 * 109.33744 * 61.31374 * 5 4 2 7 7 N 1.46927 * 108.77954 * 305.38193 * 6 5 4 8 8 C 1.34780 * 120.63245 * 233.63453 * 7 6 5 9 9 O 1.21593 * 119.99917 * 186.00748 * 8 7 6 10 10 N 1.34774 * 120.00020 * 6.00243 * 8 7 6 11 11 C 1.40191 * 120.00031 * 186.10245 * 10 8 7 12 12 C 1.40404 * 125.97266 * 359.97438 * 11 10 8 13 13 C 1.35239 * 107.86848 * 180.02562 * 12 11 10 14 14 N 1.34968 * 107.85762 * 359.97438 * 13 12 11 15 15 C 1.46506 * 125.97561 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47220 * 125.00086 * 15 14 13 17 17 H 1.08003 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00191 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47341 * 89.99652 * 20 18 16 22 22 H 1.48504 * 109.47063 * 209.99624 * 20 18 16 23 23 H 1.48503 * 109.47194 * 329.99890 * 20 18 16 24 24 N 1.31215 * 125.97182 * 179.69604 * 11 10 8 25 25 C 1.46924 * 118.73833 * 53.61013 * 7 6 5 26 26 H 1.08997 * 109.58912 * 66.17641 * 25 7 6 27 27 C 1.52995 * 109.70611 * 186.53562 * 25 7 6 28 28 C 1.53008 * 109.47202 * 65.03685 * 27 25 7 29 29 N 1.46900 * 109.46995 * 186.21060 * 28 27 25 30 30 H 1.08999 * 109.47120 * 299.99371 * 1 2 3 31 31 H 1.09002 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47328 * 59.99807 * 1 2 3 33 33 H 1.09003 * 109.45983 * 298.70558 * 4 2 1 34 34 H 1.08999 * 109.46258 * 58.66142 * 4 2 1 35 35 H 1.09002 * 109.46738 * 301.36144 * 5 4 2 36 36 H 1.08997 * 109.49655 * 181.28298 * 5 4 2 37 37 H 1.09000 * 109.58448 * 185.59716 * 6 5 4 38 38 H 1.09001 * 109.70533 * 65.24350 * 6 5 4 39 39 H 0.97001 * 119.99641 * 6.09194 * 10 8 7 40 40 H 1.07994 * 126.06283 * 0.02562 * 12 11 10 41 41 H 1.07998 * 126.07467 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.46915 * 245.00255 * 15 14 13 43 43 H 1.09005 * 109.46918 * 5.00431 * 15 14 13 44 44 H 0.97004 * 120.00105 * 180.02562 * 19 18 16 45 45 H 1.09006 * 109.47235 * 185.03137 * 27 25 7 46 46 H 1.09002 * 109.47338 * 305.03659 * 27 25 7 47 47 H 1.09003 * 109.46297 * 306.21170 * 28 27 25 48 48 H 1.08998 * 109.46863 * 66.20880 * 28 27 25 49 49 H 1.00901 * 110.99709 * 56.04971 * 29 28 27 50 50 H 1.00905 * 110.99361 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2486 5 6 3.5708 -0.6953 -1.2659 6 6 4.1052 -1.4267 -0.0306 7 7 3.5046 -0.8289 1.1697 8 6 4.2812 -0.3851 2.1779 9 8 3.7721 0.0067 3.2103 10 7 5.6220 -0.3756 2.0418 11 6 6.4349 -0.0361 3.1324 12 6 5.9881 0.3137 4.4167 13 6 7.0756 0.5699 5.1788 14 7 8.1709 0.3900 4.4110 15 6 9.5609 0.5618 4.8407 16 6 10.3331 -0.7016 4.5603 17 1 9.8381 -1.5476 4.1069 18 6 11.6715 -0.7773 4.8826 19 7 12.2741 0.2528 5.4352 20 14 12.6289 -2.3431 4.5344 21 1 13.2159 -2.2718 3.1722 22 1 13.7163 -2.4912 5.5348 23 1 11.7156 -3.5110 4.6193 24 7 7.7464 0.0053 3.1328 25 6 2.0413 -0.7235 1.2498 26 1 1.6053 -1.7213 1.2984 27 6 1.6487 0.0692 2.4980 28 6 2.1479 1.5094 2.3656 29 7 1.9032 2.2300 3.6221 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.6966 -1.7568 -1.2360 34 1 1.6581 -0.2238 -2.1390 35 1 3.9159 0.3386 -1.2543 36 1 3.9333 -1.1902 -2.1669 37 1 5.1895 -1.3245 0.0139 38 1 3.8396 -2.4824 -0.0850 39 1 6.0246 -0.6038 1.1893 40 1 4.9588 0.3683 4.7388 41 1 7.0688 0.8652 6.2176 42 1 10.0102 1.3911 4.2945 43 1 9.5871 0.7740 5.9096 44 1 13.2159 0.1996 5.6616 45 1 0.5636 0.0689 2.6022 46 1 2.0983 -0.3918 3.3775 47 1 3.2167 1.5051 2.1513 48 1 1.6164 2.0049 1.5531 49 1 2.3325 1.7539 4.4014 50 1 2.2249 3.1844 3.5601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904346912.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:09 Heat of formation + Delta-G solvation = 60.834443 kcal Electronic energy + Delta-G solvation = -30262.818728 eV Core-core repulsion = 26327.128819 eV Total energy + Delta-G solvation = -3935.689909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.50377 -41.64054 -39.00433 -37.05550 -35.79030 -34.99959 -34.54924 -33.13126 -32.60946 -30.92546 -29.51595 -28.49465 -27.31051 -26.03487 -24.81415 -23.73511 -22.85902 -22.34449 -21.90085 -20.76732 -20.17020 -18.70916 -18.67762 -18.07458 -17.39575 -17.11262 -16.57095 -16.36855 -16.15027 -15.95936 -15.66266 -15.56671 -15.28282 -14.81531 -14.67700 -14.45351 -14.21946 -14.09402 -13.76638 -13.65776 -13.52599 -13.45987 -13.01241 -12.91431 -12.77321 -12.58396 -12.45731 -12.35150 -12.27261 -12.02427 -11.80596 -11.71648 -11.49405 -11.37706 -11.32850 -11.12114 -10.72814 -10.06767 -9.74836 -9.57489 -9.39475 -8.99010 -8.33189 -6.47646 1.09715 1.16600 1.37438 1.38135 1.49708 1.73194 2.05135 2.34622 2.43522 2.82821 2.98145 3.65828 3.77953 3.81461 3.93590 4.00577 4.05193 4.25257 4.28493 4.30355 4.42705 4.51535 4.62909 4.65446 4.76734 4.81514 4.83809 4.86178 4.88871 4.96014 4.96817 5.00764 5.01915 5.10618 5.15844 5.21980 5.25233 5.31947 5.38228 5.50731 5.55908 5.61714 5.71514 5.78184 5.87622 6.02973 6.30594 6.35605 6.61934 6.65344 6.70391 7.14740 7.22386 7.49763 8.74097 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.002694 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.536992 B =10389.961509 C =11474.699954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.101 3.899 7 N -0.614 5.614 8 C 0.710 3.290 9 O -0.571 6.571 10 N -0.643 5.643 11 C 0.287 3.713 12 C -0.286 4.286 13 C 0.053 3.947 14 N -0.346 5.346 15 C 0.274 3.726 16 C -0.546 4.546 17 H 0.052 0.948 18 C 0.018 3.982 19 N -0.921 5.921 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.272 1.272 24 N -0.353 5.353 25 C 0.172 3.828 26 H 0.085 0.915 27 C -0.117 4.117 28 C 0.085 3.915 29 N -0.849 5.849 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.411 0.589 40 H 0.171 0.829 41 H 0.198 0.802 42 H 0.019 0.981 43 H 0.057 0.943 44 H 0.272 0.728 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.013 0.987 48 H 0.052 0.948 49 H 0.341 0.659 50 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.587 -2.096 -13.222 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.169 4.169 6 C -0.021 4.021 7 N -0.350 5.350 8 C 0.412 3.588 9 O -0.448 6.448 10 N -0.297 5.297 11 C 0.031 3.969 12 C -0.317 4.317 13 C -0.096 4.096 14 N -0.128 5.128 15 C 0.155 3.845 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.560 5.560 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.197 1.197 24 N -0.184 5.184 25 C 0.069 3.931 26 H 0.103 0.897 27 C -0.154 4.154 28 C -0.045 4.045 29 N -0.377 5.377 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.251 0.749 40 H 0.188 0.812 41 H 0.214 0.786 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.031 0.969 48 H 0.070 0.930 49 H 0.154 0.846 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.413 -2.070 -13.225 26.969 hybrid contribution 1.665 -0.267 0.105 1.690 sum -21.747 -2.337 -13.120 25.505 Atomic orbital electron populations 1.21778 0.93217 1.02675 1.02264 1.21592 0.96874 0.99479 0.94166 0.91882 1.21586 0.94493 1.01471 0.97274 1.21910 0.96751 1.00778 0.97488 1.21944 0.97735 0.98485 0.83981 1.47341 1.06532 1.63303 1.17871 1.15751 0.79805 0.78805 0.84400 1.90791 1.70935 1.53656 1.29452 1.41891 1.04467 1.71351 1.12021 1.19109 0.88986 0.99568 0.89242 1.21654 1.00465 1.17624 0.91959 1.23153 0.85850 1.01037 0.99535 1.48782 1.07657 1.50226 1.06142 1.19297 0.72629 0.97140 0.95449 1.21393 0.95425 0.99483 1.42126 0.92991 1.25747 0.98008 1.00319 0.94188 1.69997 1.12234 1.31694 1.42065 0.85347 0.77979 0.78732 0.78355 1.19781 1.19685 1.19704 1.77241 1.09868 1.28206 1.03084 1.21311 0.76509 0.99587 0.95735 0.89747 1.22057 0.99952 0.94951 0.98479 1.21787 0.97095 0.94231 0.91422 1.58913 1.66634 1.06167 1.05980 0.92755 0.91549 0.91622 0.90549 0.90549 0.92584 0.88536 0.90590 0.89214 0.74950 0.81168 0.78551 0.96306 0.92509 0.91848 0.91552 0.89306 0.96931 0.92960 0.84648 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.96 71.98 0.65 -0.85 16 2 C -0.10 -1.32 2.00 -10.71 -0.02 -1.34 16 3 H 0.06 1.04 6.19 -2.39 -0.01 1.02 16 4 C -0.11 -1.05 5.17 30.62 0.16 -0.89 16 5 C -0.13 -1.40 6.08 30.67 0.19 -1.21 16 6 C 0.10 1.40 6.43 86.36 0.56 1.96 16 7 N -0.61 -11.99 2.93 -812.90 -2.38 -14.37 16 8 C 0.71 19.45 6.71 179.05 1.20 20.66 16 9 O -0.57 -17.34 7.04 -4.01 -0.03 -17.37 16 10 N -0.64 -19.68 5.34 -321.23 -1.71 -21.40 16 11 C 0.29 11.35 8.10 133.31 1.08 12.43 16 12 C -0.29 -10.88 9.61 22.11 0.21 -10.67 16 13 C 0.05 2.07 11.44 83.52 0.96 3.02 16 14 N -0.35 -16.32 3.67 -351.83 -1.29 -17.61 16 15 C 0.27 14.32 6.26 85.63 0.54 14.86 16 16 C -0.55 -30.98 9.23 25.60 0.24 -30.74 16 17 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 18 C 0.02 0.98 5.46 84.65 0.46 1.44 16 19 N -0.92 -52.43 13.29 21.45 0.28 -52.15 16 20 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 N -0.35 -16.46 12.42 -54.43 -0.68 -17.14 16 25 C 0.17 2.90 2.66 44.97 0.12 3.01 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 C -0.12 -2.47 4.35 30.60 0.13 -2.34 16 28 C 0.09 2.00 5.00 86.31 0.43 2.43 16 29 N -0.85 -20.25 9.62 -186.71 -1.80 -22.05 16 30 H 0.05 0.69 6.73 -2.39 -0.02 0.67 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 1.10 5.59 -2.39 -0.01 1.09 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.41 10.81 6.34 -92.71 -0.59 10.23 16 40 H 0.17 6.10 5.93 -2.91 -0.02 6.08 16 41 H 0.20 6.16 8.06 -2.91 -0.02 6.13 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 2.91 8.07 -2.38 -0.02 2.89 16 44 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.07 1.30 6.88 -2.38 -0.02 1.28 16 46 H 0.09 2.38 5.67 -22.95 -0.13 2.25 16 47 H 0.01 0.36 5.16 -2.39 -0.01 0.35 16 48 H 0.05 1.15 6.61 -2.39 -0.02 1.14 16 49 H 0.34 8.79 8.54 -89.69 -0.77 8.02 16 50 H 0.33 7.39 9.08 -89.69 -0.81 6.58 16 Total: -1.00 -66.76 380.87 0.02 -66.73 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: -1.29 Total: 37.89 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.89 Total: 11.76 kcal Atomic # 7 Polarization: -137.14 SS G_CDS: -7.57 Total: -144.72 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.03 Total: -17.37 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.76 0.02 -66.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904346912.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.567 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds