Wall clock time and date at job start Tue Mar 31 2020 23:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.52446 * 2 1 4 4 C 1.53037 * 109.49918 * 120.07979 * 2 1 3 5 5 C 1.53046 * 109.52727 * 181.32414 * 4 2 1 6 6 C 1.53195 * 109.31317 * 298.61564 * 5 4 2 7 7 N 1.46925 * 108.76442 * 54.65345 * 6 5 4 8 8 C 1.34780 * 120.63265 * 126.40407 * 7 6 5 9 9 O 1.21581 * 120.00328 * 181.11210 * 8 7 6 10 10 N 1.34775 * 119.99604 * 1.11384 * 8 7 6 11 11 C 1.40193 * 120.00130 * 174.13991 * 10 8 7 12 12 C 1.40398 * 125.97055 * 359.72023 * 11 10 8 13 13 C 1.35250 * 107.86684 * 179.82307 * 12 11 10 14 14 N 1.34962 * 107.85713 * 0.43496 * 13 12 11 15 15 C 1.46502 * 125.97541 * 179.70858 * 14 13 12 16 16 C 1.50691 * 109.47458 * 124.99492 * 15 14 13 17 17 H 1.08002 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00370 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00736 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99669 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46953 * 90.00428 * 20 18 16 22 22 H 1.48500 * 109.47028 * 209.99958 * 20 18 16 23 23 H 1.48494 * 109.47390 * 330.00426 * 20 18 16 24 24 N 1.31216 * 125.97497 * 180.02562 * 11 10 8 25 25 C 1.46932 * 118.74253 * 306.38809 * 7 6 5 26 26 H 1.09004 * 109.69749 * 293.74912 * 25 7 6 27 27 C 1.52995 * 109.58629 * 173.39366 * 25 7 6 28 28 C 1.53000 * 109.47282 * 293.83168 * 27 25 7 29 29 N 1.46904 * 109.47183 * 173.48024 * 28 27 25 30 30 H 1.09000 * 109.47043 * 299.91523 * 1 2 3 31 31 H 1.08997 * 109.47323 * 59.91593 * 1 2 3 32 32 H 1.09003 * 109.46846 * 179.91816 * 1 2 3 33 33 H 1.08993 * 109.46468 * 301.33912 * 4 2 1 34 34 H 1.09002 * 109.46072 * 61.31477 * 4 2 1 35 35 H 1.08999 * 109.49724 * 58.57743 * 5 4 2 36 36 H 1.08998 * 109.49755 * 178.68062 * 5 4 2 37 37 H 1.09000 * 109.59692 * 294.87219 * 6 5 4 38 38 H 1.08994 * 109.70305 * 174.50412 * 6 5 4 39 39 H 0.97010 * 120.00216 * 354.15004 * 10 8 7 40 40 H 1.08004 * 126.06658 * 0.02562 * 12 11 10 41 41 H 1.08001 * 126.06937 * 180.17653 * 13 12 11 42 42 H 1.09001 * 109.46825 * 244.99453 * 15 14 13 43 43 H 1.08997 * 109.47107 * 4.99187 * 15 14 13 44 44 H 0.96993 * 120.00463 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47533 * 53.83761 * 27 25 7 46 46 H 1.09005 * 109.46593 * 173.83269 * 27 25 7 47 47 H 1.08997 * 109.47306 * 293.48367 * 28 27 25 48 48 H 1.08999 * 109.46934 * 53.48447 * 28 27 25 49 49 H 1.00894 * 110.99749 * 56.04766 * 29 28 27 50 50 H 1.00896 * 110.99993 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 1.2483 5 6 3.5709 -0.6946 1.2658 6 6 4.1054 -1.4266 0.0307 7 7 3.5046 -0.8291 -1.1696 8 6 4.2811 -0.3862 -2.1784 9 8 3.7728 0.1247 -3.1576 10 7 5.6209 -0.5099 -2.1016 11 6 6.4209 -0.1633 -3.1995 12 6 5.9611 0.3180 -4.4356 13 6 7.0391 0.5370 -5.2226 14 7 8.1404 0.1993 -4.5194 15 6 9.5233 0.2755 -4.9968 16 6 10.3391 1.1088 -4.0424 17 1 9.8739 1.5389 -3.1677 18 6 11.6793 1.3220 -4.2856 19 7 12.3915 2.0488 -3.4523 20 14 12.4841 0.5773 -5.7980 21 1 12.3813 1.5295 -6.9329 22 1 13.9148 0.3008 -5.5119 23 1 11.7960 -0.6902 -6.1515 24 7 7.7299 -0.2372 -3.2533 25 6 2.0413 -0.7237 -1.2496 26 1 1.6033 -1.7206 -1.2994 27 6 1.6518 0.0706 -2.4979 28 6 2.1276 1.5173 -2.3509 29 7 1.8939 2.2397 -3.6085 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6582 -0.2245 2.1389 34 1 1.6970 -1.7573 1.2351 35 1 3.9157 0.3393 1.2537 36 1 3.9337 -1.1892 2.1668 37 1 3.8376 -2.4817 0.0867 38 1 5.1898 -1.3267 -0.0150 39 1 6.0318 -0.8389 -1.2868 40 1 4.9298 0.4868 -4.7085 41 1 7.0214 0.9113 -6.2355 42 1 9.9439 -0.7285 -5.0535 43 1 9.5415 0.7334 -5.9858 44 1 13.3345 2.1985 -3.6233 45 1 2.1187 -0.3782 -3.3746 46 1 0.5682 0.0546 -2.6152 47 1 1.5751 2.0015 -1.5457 48 1 3.1924 1.5277 -2.1184 49 1 0.9234 2.1894 -3.8795 50 1 2.2005 3.1984 -3.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904346913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:30 Heat of formation + Delta-G solvation = 95.446131 kcal Electronic energy + Delta-G solvation = -30262.898552 eV Core-core repulsion = 26328.709518 eV Total energy + Delta-G solvation = -3934.189034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.32858 -40.20283 -38.02530 -36.03606 -34.28455 -33.78237 -33.08259 -32.36521 -31.12459 -29.33364 -28.65022 -27.03102 -26.69093 -24.94242 -23.01999 -22.65436 -21.64470 -21.44945 -20.39649 -19.52719 -19.03386 -17.69347 -17.01105 -16.54996 -15.94597 -15.87864 -15.63158 -15.53100 -14.90527 -14.77373 -14.59610 -14.33596 -13.97507 -13.65358 -13.55636 -13.31599 -13.16334 -12.94266 -12.77839 -12.47506 -12.32784 -12.21146 -12.02927 -11.97417 -11.74383 -11.35412 -11.22057 -11.02749 -10.95812 -10.77284 -10.69119 -10.57733 -10.33672 -9.86563 -9.85782 -9.44678 -8.91898 -8.73184 -8.67852 -8.27022 -8.04082 -7.34933 -6.19947 -4.21645 2.37935 2.68886 3.14831 3.18085 3.25022 3.25889 3.41279 3.89155 4.06674 4.26330 4.39641 4.43459 4.46357 4.65788 4.70995 4.93509 5.02820 5.07938 5.10660 5.23439 5.28665 5.36462 5.38306 5.41930 5.45810 5.51319 5.62595 5.68744 5.71934 5.78768 5.81116 5.82915 5.87639 6.08921 6.17365 6.27734 6.37830 6.45143 6.58382 6.67589 6.72338 6.89613 6.97308 7.33060 7.38595 7.56986 7.60178 7.90778 7.94775 8.39150 8.68799 8.72127 8.90726 9.35546 10.92887 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002660 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.212657 B =10522.984572 C =11274.079680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.109 3.891 7 N -0.624 5.624 8 C 0.702 3.298 9 O -0.527 6.527 10 N -0.647 5.647 11 C 0.280 3.720 12 C -0.277 4.277 13 C 0.048 3.952 14 N -0.323 5.323 15 C 0.233 3.767 16 C -0.532 4.532 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.264 1.264 24 N -0.304 5.304 25 C 0.175 3.825 26 H 0.071 0.929 27 C -0.121 4.121 28 C 0.082 3.918 29 N -0.835 5.835 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.402 0.598 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.267 0.733 45 H 0.118 0.882 46 H 0.046 0.954 47 H -0.003 1.003 48 H 0.085 0.915 49 H 0.327 0.673 50 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.670 -6.265 7.356 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.015 4.015 7 N -0.363 5.363 8 C 0.403 3.597 9 O -0.402 6.402 10 N -0.300 5.300 11 C 0.025 3.975 12 C -0.309 4.309 13 C -0.101 4.101 14 N -0.104 5.104 15 C 0.114 3.886 16 C -0.570 4.570 17 H 0.103 0.897 18 C -0.128 4.128 19 N -0.527 5.527 20 Si 0.699 3.301 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 N -0.135 5.135 25 C 0.071 3.929 26 H 0.089 0.911 27 C -0.158 4.158 28 C -0.048 4.048 29 N -0.363 5.363 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.239 0.761 40 H 0.184 0.816 41 H 0.183 0.817 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.136 0.864 46 H 0.064 0.936 47 H 0.015 0.985 48 H 0.103 0.897 49 H 0.138 0.862 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.152 -6.668 6.924 25.068 hybrid contribution -0.395 0.404 0.096 0.573 sum -23.547 -6.264 7.020 25.356 Atomic orbital electron populations 1.21793 0.94495 1.01933 1.01962 1.21688 0.95916 1.00681 0.94664 0.90240 1.21578 0.95086 1.00785 0.97662 1.21931 0.96265 1.01655 0.97607 1.21670 0.97853 0.97359 0.84588 1.47230 1.06106 1.64961 1.17953 1.15713 0.80360 0.79792 0.83794 1.91026 1.70427 1.46749 1.31960 1.41814 1.04406 1.68470 1.15304 1.18816 0.89486 1.00939 0.88240 1.21595 1.00652 1.15613 0.93015 1.22544 0.86587 1.01936 0.99070 1.48541 1.07179 1.46997 1.07731 1.19997 0.74417 0.98606 0.95590 1.21125 0.94092 1.31658 1.10135 0.89684 1.24836 0.96737 0.94655 0.96582 1.69874 1.08060 1.38288 1.36471 0.86909 0.79570 0.80257 0.83385 1.19727 1.20600 1.18852 1.77366 1.08642 1.25913 1.01600 1.21120 0.77630 0.98771 0.95382 0.91140 1.22205 0.98632 0.96124 0.98849 1.22034 1.01501 0.92792 0.88492 1.58501 1.24506 1.18692 1.34594 0.92561 0.92259 0.92557 0.91713 0.91773 0.91275 0.90546 0.91094 0.90286 0.76067 0.81580 0.81652 0.94197 0.93440 0.92242 0.86413 0.93562 0.98500 0.89659 0.86221 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.97 37.16 0.33 -0.57 16 2 C -0.11 -0.83 1.98 -90.50 -0.18 -1.01 16 3 H 0.08 0.73 6.17 -51.93 -0.32 0.41 16 4 C -0.11 -0.73 5.17 -26.69 -0.14 -0.87 16 5 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 6 C 0.11 0.88 6.42 -3.71 -0.02 0.86 16 7 N -0.62 -6.60 2.92 -170.91 -0.50 -7.10 16 8 C 0.70 10.06 7.03 -86.92 -0.61 9.45 16 9 O -0.53 -8.48 6.96 5.29 0.04 -8.44 16 10 N -0.65 -10.25 5.36 -15.51 -0.08 -10.33 16 11 C 0.28 5.63 8.10 -154.36 -1.25 4.38 16 12 C -0.28 -5.46 9.61 -39.83 -0.38 -5.84 16 13 C 0.05 0.94 11.44 -17.24 -0.20 0.74 16 14 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 15 C 0.23 5.62 5.33 -5.20 -0.03 5.60 16 16 C -0.53 -15.21 9.79 -34.45 -0.34 -15.55 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 18 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 20 Si 0.87 20.37 27.47 -169.99 -4.67 15.70 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 24 N -0.30 -7.08 12.42 31.44 0.39 -6.69 16 25 C 0.17 1.61 2.66 -67.60 -0.18 1.43 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 C -0.12 -1.31 4.34 -26.73 -0.12 -1.42 16 28 C 0.08 0.98 4.81 -3.82 -0.02 0.96 16 29 N -0.84 -9.91 9.54 -10.37 -0.10 -10.01 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.39 6.77 -51.93 -0.35 0.04 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.64 5.58 -51.93 -0.29 0.35 16 39 H 0.40 5.50 6.29 -40.82 -0.26 5.24 16 40 H 0.17 3.21 5.94 -52.48 -0.31 2.90 16 41 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 42 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 43 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.12 1.64 5.79 -52.87 -0.31 1.34 16 46 H 0.05 0.43 6.95 -51.93 -0.36 0.07 16 47 H 0.00 -0.03 6.62 -51.93 -0.34 -0.38 16 48 H 0.09 1.28 5.17 -51.93 -0.27 1.01 16 49 H 0.33 3.21 8.99 -39.29 -0.35 2.86 16 50 H 0.33 3.72 9.08 -39.29 -0.36 3.36 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -33.22 377.83 -9.75 -42.98 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.68 Total: 12.89 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.39 Total: -0.89 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: 0.25 Total: -67.94 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.04 Total: -8.44 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.22 -9.75 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904346913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.421 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds