Wall clock time and date at job start Tue Mar 31 2020 23:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.52446 * 2 1 4 4 C 1.53037 * 109.49918 * 120.07979 * 2 1 3 5 5 C 1.53046 * 109.52727 * 181.32414 * 4 2 1 6 6 C 1.53195 * 109.31317 * 298.61564 * 5 4 2 7 7 N 1.46925 * 108.76442 * 54.65345 * 6 5 4 8 8 C 1.34780 * 120.63265 * 126.40407 * 7 6 5 9 9 O 1.21581 * 120.00328 * 181.11210 * 8 7 6 10 10 N 1.34775 * 119.99604 * 1.11384 * 8 7 6 11 11 C 1.40193 * 120.00130 * 174.13991 * 10 8 7 12 12 C 1.40398 * 125.97055 * 359.72023 * 11 10 8 13 13 C 1.35250 * 107.86684 * 179.82307 * 12 11 10 14 14 N 1.34962 * 107.85713 * 0.43496 * 13 12 11 15 15 C 1.46502 * 125.97541 * 179.70858 * 14 13 12 16 16 C 1.50691 * 109.47458 * 124.99492 * 15 14 13 17 17 H 1.08002 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00370 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00736 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99669 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46953 * 90.00428 * 20 18 16 22 22 H 1.48500 * 109.47028 * 209.99958 * 20 18 16 23 23 H 1.48494 * 109.47390 * 330.00426 * 20 18 16 24 24 N 1.31216 * 125.97497 * 180.02562 * 11 10 8 25 25 C 1.46932 * 118.74253 * 306.38809 * 7 6 5 26 26 H 1.09004 * 109.69749 * 293.74912 * 25 7 6 27 27 C 1.52995 * 109.58629 * 173.39366 * 25 7 6 28 28 C 1.53000 * 109.47282 * 293.83168 * 27 25 7 29 29 N 1.46904 * 109.47183 * 173.48024 * 28 27 25 30 30 H 1.09000 * 109.47043 * 299.91523 * 1 2 3 31 31 H 1.08997 * 109.47323 * 59.91593 * 1 2 3 32 32 H 1.09003 * 109.46846 * 179.91816 * 1 2 3 33 33 H 1.08993 * 109.46468 * 301.33912 * 4 2 1 34 34 H 1.09002 * 109.46072 * 61.31477 * 4 2 1 35 35 H 1.08999 * 109.49724 * 58.57743 * 5 4 2 36 36 H 1.08998 * 109.49755 * 178.68062 * 5 4 2 37 37 H 1.09000 * 109.59692 * 294.87219 * 6 5 4 38 38 H 1.08994 * 109.70305 * 174.50412 * 6 5 4 39 39 H 0.97010 * 120.00216 * 354.15004 * 10 8 7 40 40 H 1.08004 * 126.06658 * 0.02562 * 12 11 10 41 41 H 1.08001 * 126.06937 * 180.17653 * 13 12 11 42 42 H 1.09001 * 109.46825 * 244.99453 * 15 14 13 43 43 H 1.08997 * 109.47107 * 4.99187 * 15 14 13 44 44 H 0.96993 * 120.00463 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47533 * 53.83761 * 27 25 7 46 46 H 1.09005 * 109.46593 * 173.83269 * 27 25 7 47 47 H 1.08997 * 109.47306 * 293.48367 * 28 27 25 48 48 H 1.08999 * 109.46934 * 53.48447 * 28 27 25 49 49 H 1.00894 * 110.99749 * 56.04766 * 29 28 27 50 50 H 1.00896 * 110.99993 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 1.2483 5 6 3.5709 -0.6946 1.2658 6 6 4.1054 -1.4266 0.0307 7 7 3.5046 -0.8291 -1.1696 8 6 4.2811 -0.3862 -2.1784 9 8 3.7728 0.1247 -3.1576 10 7 5.6209 -0.5099 -2.1016 11 6 6.4209 -0.1633 -3.1995 12 6 5.9611 0.3180 -4.4356 13 6 7.0391 0.5370 -5.2226 14 7 8.1404 0.1993 -4.5194 15 6 9.5233 0.2755 -4.9968 16 6 10.3391 1.1088 -4.0424 17 1 9.8739 1.5389 -3.1677 18 6 11.6793 1.3220 -4.2856 19 7 12.3915 2.0488 -3.4523 20 14 12.4841 0.5773 -5.7980 21 1 12.3813 1.5295 -6.9329 22 1 13.9148 0.3008 -5.5119 23 1 11.7960 -0.6902 -6.1515 24 7 7.7299 -0.2372 -3.2533 25 6 2.0413 -0.7237 -1.2496 26 1 1.6033 -1.7206 -1.2994 27 6 1.6518 0.0706 -2.4979 28 6 2.1276 1.5173 -2.3509 29 7 1.8939 2.2397 -3.6085 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6582 -0.2245 2.1389 34 1 1.6970 -1.7573 1.2351 35 1 3.9157 0.3393 1.2537 36 1 3.9337 -1.1892 2.1668 37 1 3.8376 -2.4817 0.0867 38 1 5.1898 -1.3267 -0.0150 39 1 6.0318 -0.8389 -1.2868 40 1 4.9298 0.4868 -4.7085 41 1 7.0214 0.9113 -6.2355 42 1 9.9439 -0.7285 -5.0535 43 1 9.5415 0.7334 -5.9858 44 1 13.3345 2.1985 -3.6233 45 1 2.1187 -0.3782 -3.3746 46 1 0.5682 0.0546 -2.6152 47 1 1.5751 2.0015 -1.5457 48 1 3.1924 1.5277 -2.1184 49 1 0.9234 2.1894 -3.8795 50 1 2.2005 3.1984 -3.5371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904346913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:21 Heat of formation + Delta-G solvation = 71.801594 kcal Electronic energy + Delta-G solvation = -30263.923856 eV Core-core repulsion = 26328.709518 eV Total energy + Delta-G solvation = -3935.214338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 9.12 seconds Orbital eigenvalues (eV) -42.45663 -41.62024 -38.97807 -37.04547 -35.74965 -34.95920 -34.52641 -33.12791 -32.89442 -30.91156 -29.60154 -28.78741 -27.31369 -25.94200 -24.45346 -23.78523 -22.82349 -22.31462 -21.81809 -20.78150 -20.07430 -19.08016 -18.72052 -18.01766 -17.22519 -16.99356 -16.61148 -16.34943 -16.31763 -16.02966 -15.58387 -15.39607 -15.37028 -14.82497 -14.65219 -14.42332 -14.19984 -14.16255 -14.04620 -13.74822 -13.67573 -13.36570 -13.03869 -12.93687 -12.61877 -12.52229 -12.49000 -12.33250 -11.94072 -11.88549 -11.80248 -11.68909 -11.52677 -11.41253 -11.22028 -11.10821 -10.85964 -10.02575 -9.68073 -9.56422 -9.19095 -8.91797 -8.36802 -6.46728 1.11021 1.20981 1.36944 1.40333 1.49976 1.79663 2.07357 2.29672 2.50082 2.86037 2.95889 3.65796 3.79286 3.81451 3.93665 4.00394 4.05120 4.23660 4.25284 4.31125 4.42148 4.51715 4.58840 4.61639 4.64271 4.76767 4.80014 4.83752 4.84637 4.89211 4.94090 5.00858 5.01917 5.10871 5.18557 5.21386 5.26403 5.29591 5.35247 5.35549 5.51710 5.63276 5.76636 5.85596 5.99276 6.10434 6.45956 6.48140 6.58792 6.70460 6.75473 7.15256 7.18427 7.57722 8.80480 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.002660 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.212657 B =10522.984572 C =11274.079680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.102 3.898 7 N -0.615 5.615 8 C 0.695 3.305 9 O -0.545 6.545 10 N -0.646 5.646 11 C 0.288 3.712 12 C -0.284 4.284 13 C 0.055 3.945 14 N -0.347 5.347 15 C 0.241 3.759 16 C -0.545 4.545 17 H 0.025 0.975 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.956 3.044 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.240 1.240 24 N -0.356 5.356 25 C 0.172 3.828 26 H 0.087 0.913 27 C -0.112 4.112 28 C 0.090 3.910 29 N -0.848 5.848 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.409 0.591 40 H 0.171 0.829 41 H 0.206 0.794 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.272 0.728 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.008 0.992 48 H 0.052 0.948 49 H 0.339 0.661 50 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.478 -7.856 6.501 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.021 4.021 7 N -0.353 5.353 8 C 0.397 3.603 9 O -0.421 6.421 10 N -0.300 5.300 11 C 0.032 3.968 12 C -0.315 4.315 13 C -0.092 4.092 14 N -0.129 5.129 15 C 0.121 3.879 16 C -0.583 4.583 17 H 0.043 0.957 18 C -0.185 4.185 19 N -0.582 5.582 20 Si 0.777 3.223 21 H -0.177 1.177 22 H -0.206 1.206 23 H -0.163 1.163 24 N -0.187 5.187 25 C 0.069 3.931 26 H 0.105 0.895 27 C -0.150 4.150 28 C -0.040 4.040 29 N -0.377 5.377 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.188 0.812 41 H 0.222 0.778 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.026 0.974 48 H 0.070 0.930 49 H 0.151 0.849 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.035 -8.275 6.111 27.066 hybrid contribution 0.006 0.958 0.504 1.082 sum -25.030 -7.317 6.615 26.903 Atomic orbital electron populations 1.21768 0.93077 1.02779 1.02168 1.21615 0.96954 0.99438 0.94332 0.92159 1.21576 0.94344 1.01551 0.97257 1.21912 0.96896 1.00614 0.97622 1.21917 0.97631 0.98529 0.83981 1.47313 1.06470 1.63878 1.17598 1.15929 0.79906 0.79908 0.84537 1.91024 1.70505 1.47514 1.33079 1.41937 1.04862 1.68589 1.14655 1.19142 0.89045 0.99157 0.89435 1.21739 1.00866 1.15908 0.93000 1.23205 0.85417 1.00247 1.00379 1.48431 1.07376 1.48835 1.08300 1.19834 0.74651 0.97887 0.95539 1.21239 0.95164 1.32476 1.09455 0.95685 1.25930 0.97112 0.94794 1.00658 1.70052 1.08707 1.40195 1.39294 0.85609 0.77976 0.80390 0.78361 1.17743 1.20566 1.16278 1.77282 1.10291 1.28400 1.02725 1.21313 0.76629 0.99581 0.95585 0.89516 1.22035 0.99377 0.95216 0.98371 1.21858 0.99523 0.93788 0.88829 1.58481 1.25564 1.18911 1.34783 0.91765 0.92709 0.91355 0.90720 0.90316 0.93033 0.88603 0.88982 0.90817 0.75176 0.81185 0.77752 0.93829 0.90268 0.91899 0.89426 0.91705 0.97439 0.92984 0.84877 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.97 71.98 0.65 -0.73 16 2 C -0.10 -1.37 1.98 -10.72 -0.02 -1.40 16 3 H 0.06 1.05 6.17 -2.38 -0.01 1.04 16 4 C -0.11 -1.11 5.17 30.62 0.16 -0.96 16 5 C -0.13 -1.60 6.08 30.68 0.19 -1.42 16 6 C 0.10 1.52 6.42 86.36 0.55 2.08 16 7 N -0.61 -12.61 2.92 -812.89 -2.38 -14.99 16 8 C 0.70 20.21 7.03 179.05 1.26 21.47 16 9 O -0.55 -17.86 6.96 -3.97 -0.03 -17.89 16 10 N -0.65 -21.05 5.36 -321.24 -1.72 -22.77 16 11 C 0.29 11.91 8.10 133.31 1.08 12.99 16 12 C -0.28 -11.22 9.61 22.11 0.21 -11.01 16 13 C 0.06 2.14 11.44 83.52 0.96 3.09 16 14 N -0.35 -16.13 3.67 -351.85 -1.29 -17.42 16 15 C 0.24 11.49 5.33 85.63 0.46 11.95 16 16 C -0.55 -32.20 9.79 25.60 0.25 -31.95 16 17 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 18 C 0.01 0.78 5.47 84.65 0.46 1.25 16 19 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 20 Si 0.96 41.46 27.47 68.60 1.88 43.35 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.24 -9.41 6.54 99.48 0.65 -8.75 16 24 N -0.36 -17.13 12.42 -54.44 -0.68 -17.80 16 25 C 0.17 2.91 2.66 44.97 0.12 3.03 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 27 C -0.11 -2.34 4.34 30.59 0.13 -2.21 16 28 C 0.09 2.15 4.81 86.30 0.41 2.57 16 29 N -0.85 -20.05 9.54 -186.72 -1.78 -21.83 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.60 6.77 -2.39 -0.02 0.58 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.18 5.58 -2.39 -0.01 1.17 16 39 H 0.41 11.63 6.29 -92.70 -0.58 11.05 16 40 H 0.17 6.60 5.94 -2.91 -0.02 6.59 16 41 H 0.21 5.99 8.06 -2.91 -0.02 5.97 16 42 H 0.04 2.04 7.20 -2.39 -0.02 2.02 16 43 H 0.08 3.27 7.50 -2.39 -0.02 3.25 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.09 2.44 5.79 -17.36 -0.10 2.34 16 46 H 0.06 1.10 6.95 -2.38 -0.02 1.08 16 47 H 0.01 0.17 6.62 -2.39 -0.02 0.15 16 48 H 0.05 1.61 5.17 -2.39 -0.01 1.60 16 49 H 0.34 6.43 8.99 -89.70 -0.81 5.63 16 50 H 0.34 7.54 9.08 -89.70 -0.81 6.73 16 Total: -1.00 -76.85 377.83 -0.18 -77.02 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -1.35 Total: 42.26 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.87 Total: 8.75 kcal Atomic # 7 Polarization: -145.95 SS G_CDS: -7.55 Total: -153.50 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.03 Total: -17.89 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.35 kcal Total: -76.85 -0.18 -77.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904346913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.824 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.12 seconds