Wall clock time and date at job start Wed Apr 1 2020 01:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 C 1.52994 * 109.46748 * 119.99850 * 2 1 3 5 5 C 1.52998 * 109.47364 * 65.00086 * 4 2 1 6 6 N 1.46498 * 109.47148 * 179.97438 * 5 4 2 7 7 C 1.34820 * 126.59304 * 124.99684 * 6 5 4 8 8 C 1.36601 * 106.84007 * 179.97438 * 7 6 5 9 9 C 1.47521 * 125.77233 * 179.97438 * 8 7 6 10 10 O 1.21606 * 119.99595 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00208 * 179.97438 * 9 8 7 12 12 C 1.47428 * 125.64908 * 180.02562 * 11 9 8 13 13 C 1.54900 * 104.83449 * 204.09618 * 12 11 9 14 14 H 1.09011 * 111.00318 * 81.06450 * 13 12 11 15 15 C 1.52996 * 111.00779 * 204.91826 * 13 12 11 16 16 C 1.55161 * 101.58443 * 322.99535 * 13 12 11 17 17 H 1.09001 * 110.86964 * 277.07237 * 16 13 12 18 18 N 1.46499 * 110.72445 * 153.86349 * 16 13 12 19 19 C 1.36935 * 119.99938 * 160.02467 * 18 16 13 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99632 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99535 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 0.27829 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47017 * 125.64569 * 359.97438 * 11 9 8 28 28 N 1.34404 * 108.45718 * 0.24652 * 8 7 6 29 29 N 1.28758 * 109.52063 * 359.58283 * 28 8 7 30 30 H 1.09001 * 109.47427 * 60.00064 * 1 2 3 31 31 H 1.08994 * 109.47446 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47323 * 300.00323 * 1 2 3 33 33 H 1.08994 * 109.46751 * 240.00100 * 2 1 3 34 34 H 1.09001 * 109.46850 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47141 * 299.99694 * 3 2 1 36 36 H 1.08999 * 109.47333 * 59.99682 * 3 2 1 37 37 H 1.09001 * 109.47337 * 304.99232 * 4 2 1 38 38 H 1.09004 * 109.47308 * 185.00245 * 4 2 1 39 39 H 1.09001 * 109.47040 * 59.99831 * 5 4 2 40 40 H 1.08999 * 109.47037 * 299.99601 * 5 4 2 41 41 H 1.08002 * 126.57770 * 0.02562 * 7 6 5 42 42 H 1.09005 * 110.36611 * 322.94125 * 12 11 9 43 43 H 1.09004 * 110.36164 * 85.14898 * 12 11 9 44 44 H 1.08998 * 109.47394 * 172.19820 * 15 13 12 45 45 H 1.08996 * 109.46838 * 292.19667 * 15 13 12 46 46 H 1.09000 * 109.46980 * 52.19595 * 15 13 12 47 47 H 0.97004 * 119.99469 * 340.02536 * 18 16 13 48 48 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.88548 * 59.56087 * 27 11 9 50 50 H 1.08995 * 110.01292 * 298.45786 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6351 -2.1954 1.1880 6 7 2.1239 -2.8861 2.3839 7 6 1.3871 -3.6054 3.2542 8 6 2.2448 -4.0668 4.2120 9 6 1.8752 -4.9025 5.3702 10 8 0.7179 -5.2387 5.5327 11 7 2.8203 -5.2942 6.2475 12 6 2.5913 -6.1270 7.4423 13 6 3.7622 -5.7825 8.3962 14 1 3.5654 -4.8574 8.9381 15 6 4.0381 -6.9347 9.3643 16 6 4.9355 -5.6027 7.3969 17 1 5.3733 -6.5659 7.1346 18 7 5.9538 -4.7057 7.9491 19 6 7.2274 -4.7239 7.4464 20 1 7.4811 -5.3992 6.6427 21 6 8.1920 -3.8737 7.9692 22 7 9.4164 -3.8915 7.4864 23 14 7.7548 -2.7102 9.3637 24 1 7.2854 -1.4183 8.8016 25 1 6.6774 -3.3111 10.1903 26 1 8.9540 -2.4762 10.2077 27 6 4.2506 -4.9627 6.1709 28 7 3.4813 -3.6257 3.9242 29 7 3.4480 -2.9266 2.8434 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6053 -0.2616 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 2.0698 -2.6550 0.3003 40 1 0.5488 -2.2723 1.1421 41 1 0.3231 -3.7834 3.2032 42 1 1.6376 -5.8727 7.9049 43 1 2.6138 -7.1842 7.1777 44 1 4.9478 -6.7262 9.9274 45 1 3.2000 -7.0387 10.0534 46 1 4.1629 -7.8599 8.8018 47 1 5.7257 -4.0990 8.6707 48 1 10.0906 -3.2976 7.8520 49 1 4.3822 -3.8809 6.1957 50 1 4.6787 -5.3672 5.2538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939132202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:28 Heat of formation + Delta-G solvation = 67.034224 kcal Electronic energy + Delta-G solvation = -29029.051385 eV Core-core repulsion = 25093.630319 eV Total energy + Delta-G solvation = -3935.421066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.20743 -39.61707 -37.69648 -37.46918 -34.49613 -34.07214 -32.48887 -31.10584 -30.89977 -29.66187 -27.80074 -27.67540 -26.47720 -24.85025 -23.95163 -22.92942 -21.93393 -21.12662 -20.52934 -20.09537 -19.44943 -17.58382 -17.44241 -16.39570 -16.30188 -15.98892 -15.73744 -15.25876 -14.81258 -14.72061 -14.30082 -14.21396 -13.97895 -13.61885 -13.40967 -13.21743 -13.11345 -12.81256 -12.55617 -12.54178 -12.42050 -12.31896 -12.12435 -11.90378 -11.66333 -11.48112 -11.38265 -11.31920 -11.15842 -11.04397 -10.95705 -10.64575 -10.58207 -10.38162 -10.28526 -10.03359 -9.89395 -9.56279 -9.29351 -8.92957 -8.29762 -7.29891 -5.75347 -3.12246 1.10014 1.82614 1.92597 3.16887 3.39303 3.42424 3.42736 3.47551 3.95625 4.16944 4.25800 4.36954 4.48820 4.57835 4.60750 4.71716 4.77812 4.84144 4.99838 5.10000 5.11392 5.15765 5.16360 5.20671 5.33888 5.37431 5.45231 5.50827 5.52079 5.60190 5.66325 5.73420 5.78151 5.82367 5.84479 5.86547 5.87411 5.93658 6.18397 6.21828 6.27347 6.41251 6.54531 6.57907 6.64697 6.91433 7.73337 7.96516 8.00771 8.31922 8.43443 9.20275 9.92467 10.10824 11.42660 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.002942 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.699050 B = 9514.265747 C =11551.383440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.131 4.131 5 C 0.121 3.879 6 N -0.364 5.364 7 C 0.086 3.914 8 C -0.096 4.096 9 C 0.615 3.385 10 O -0.556 6.556 11 N -0.598 5.598 12 C 0.116 3.884 13 C -0.118 4.118 14 H 0.081 0.919 15 C -0.134 4.134 16 C 0.180 3.820 17 H 0.074 0.926 18 N -0.735 5.735 19 C -0.245 4.245 20 H 0.093 0.907 21 C 0.008 3.992 22 N -0.931 5.931 23 Si 0.882 3.118 24 H -0.284 1.284 25 H -0.276 1.276 26 H -0.291 1.291 27 C 0.083 3.917 28 N -0.187 5.187 29 N -0.062 5.062 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.201 0.799 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.363 0.637 48 H 0.259 0.741 49 H 0.080 0.920 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.139 3.854 -13.018 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.169 4.169 5 C 0.000 4.000 6 N -0.149 5.149 7 C -0.071 4.071 8 C -0.235 4.235 9 C 0.401 3.599 10 O -0.435 6.435 11 N -0.329 5.329 12 C -0.007 4.007 13 C -0.138 4.138 14 H 0.100 0.900 15 C -0.192 4.192 16 C 0.068 3.932 17 H 0.092 0.908 18 N -0.377 5.377 19 C -0.375 4.375 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.202 1.202 26 H -0.218 1.218 27 C -0.042 4.042 28 N -0.060 5.060 29 N -0.042 5.042 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.218 0.782 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.197 0.803 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.106 4.125 -13.392 24.508 hybrid contribution -1.180 0.801 0.882 1.676 sum -21.286 4.926 -12.510 25.177 Atomic orbital electron populations 1.21963 0.95036 1.01815 1.02326 1.21060 0.95920 0.96783 0.97439 1.21826 1.01459 0.95283 1.02002 1.21989 1.03401 0.92227 0.99266 1.22150 1.00414 0.93326 0.84109 1.50623 1.08172 1.35751 1.20349 1.23282 0.99728 0.93925 0.90121 1.21409 0.90029 1.10311 1.01778 1.16389 0.84069 0.78985 0.80432 1.90765 1.18380 1.58653 1.75731 1.48291 1.09629 1.50273 1.24735 1.22291 0.98980 0.94640 0.84743 1.22668 0.95156 0.99759 0.96175 0.90023 1.21621 1.01765 0.97184 0.98618 1.21281 0.87804 0.94076 0.89997 0.90825 1.42686 1.07963 1.45158 1.41871 1.19067 0.84426 1.18604 1.15379 0.88960 1.24653 0.95489 0.99394 0.99226 1.69704 1.02162 1.41413 1.44549 0.86594 0.77257 0.81874 0.83073 1.21088 1.20244 1.21774 1.23303 0.77295 1.02236 1.01365 1.74942 1.19723 1.05244 1.06126 1.82086 0.95154 1.19292 1.07714 0.92298 0.92572 0.92379 0.90607 0.92248 0.92392 0.92508 0.90903 0.89693 0.88436 0.87813 0.78195 0.90701 0.91185 0.91440 0.93086 0.92478 0.80340 0.93048 0.90155 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 8.95 37.16 0.33 -0.30 16 2 C -0.09 -0.46 2.92 -90.62 -0.26 -0.73 16 3 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 4 C -0.13 -0.88 4.89 -26.74 -0.13 -1.01 16 5 C 0.12 0.78 6.29 -4.04 -0.03 0.75 16 6 N -0.36 -4.02 3.69 -61.06 -0.23 -4.25 16 7 C 0.09 1.00 11.27 -16.83 -0.19 0.81 16 8 C -0.10 -1.50 6.85 -83.55 -0.57 -2.07 16 9 C 0.61 10.42 7.85 -12.48 -0.10 10.32 16 10 O -0.56 -10.02 17.12 5.27 0.09 -9.93 16 11 N -0.60 -10.07 3.33 -171.75 -0.57 -10.64 16 12 C 0.12 1.70 6.37 -2.53 -0.02 1.68 16 13 C -0.12 -1.80 3.25 -88.48 -0.29 -2.09 16 14 H 0.08 1.29 8.00 -51.92 -0.42 0.87 16 15 C -0.13 -1.79 9.31 37.16 0.35 -1.45 16 16 C 0.18 3.39 3.06 -66.09 -0.20 3.19 16 17 H 0.07 1.41 8.02 -51.93 -0.42 1.00 16 18 N -0.74 -16.92 4.98 -51.65 -0.26 -17.18 16 19 C -0.25 -6.77 10.46 -15.06 -0.16 -6.93 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 22 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 23 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 C 0.08 1.55 5.27 -3.06 -0.02 1.54 16 28 N -0.19 -3.25 9.78 32.85 0.32 -2.93 16 29 N -0.06 -0.96 13.65 60.35 0.82 -0.14 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.18 6.56 -51.93 -0.34 -0.16 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.39 6.51 -51.93 -0.34 0.05 16 41 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 43 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 47 H 0.36 8.28 5.57 -40.82 -0.23 8.05 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.08 1.67 7.50 -51.93 -0.39 1.28 16 50 H 0.07 1.36 7.74 -51.93 -0.40 0.96 16 LS Contribution 404.40 15.07 6.09 6.09 Total: -1.00 -34.37 404.40 -7.15 -41.51 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.45 Total: 5.12 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.04 Total: 3.38 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: 0.87 Total: -63.48 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.37 -7.15 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939132202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.548 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds