Wall clock time and date at job start Wed Apr 1 2020 01:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 C 1.52994 * 109.46748 * 119.99850 * 2 1 3 5 5 C 1.52998 * 109.47364 * 65.00086 * 4 2 1 6 6 N 1.46498 * 109.47148 * 179.97438 * 5 4 2 7 7 C 1.34820 * 126.59304 * 124.99684 * 6 5 4 8 8 C 1.36601 * 106.84007 * 179.97438 * 7 6 5 9 9 C 1.47521 * 125.77233 * 179.97438 * 8 7 6 10 10 O 1.21606 * 119.99595 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00208 * 179.97438 * 9 8 7 12 12 C 1.47428 * 125.64908 * 180.02562 * 11 9 8 13 13 C 1.54900 * 104.83449 * 204.09618 * 12 11 9 14 14 H 1.09011 * 111.00318 * 81.06450 * 13 12 11 15 15 C 1.52996 * 111.00779 * 204.91826 * 13 12 11 16 16 C 1.55161 * 101.58443 * 322.99535 * 13 12 11 17 17 H 1.09001 * 110.86964 * 277.07237 * 16 13 12 18 18 N 1.46499 * 110.72445 * 153.86349 * 16 13 12 19 19 C 1.36935 * 119.99938 * 160.02467 * 18 16 13 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99632 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99535 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 0.27829 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71949 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72145 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72253 * 23 21 19 27 27 C 1.47017 * 125.64569 * 359.97438 * 11 9 8 28 28 N 1.34404 * 108.45718 * 0.24652 * 8 7 6 29 29 N 1.28758 * 109.52063 * 359.58283 * 28 8 7 30 30 H 1.09001 * 109.47427 * 60.00064 * 1 2 3 31 31 H 1.08994 * 109.47446 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47323 * 300.00323 * 1 2 3 33 33 H 1.08994 * 109.46751 * 240.00100 * 2 1 3 34 34 H 1.09001 * 109.46850 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47141 * 299.99694 * 3 2 1 36 36 H 1.08999 * 109.47333 * 59.99682 * 3 2 1 37 37 H 1.09001 * 109.47337 * 304.99232 * 4 2 1 38 38 H 1.09004 * 109.47308 * 185.00245 * 4 2 1 39 39 H 1.09001 * 109.47040 * 59.99831 * 5 4 2 40 40 H 1.08999 * 109.47037 * 299.99601 * 5 4 2 41 41 H 1.08002 * 126.57770 * 0.02562 * 7 6 5 42 42 H 1.09005 * 110.36611 * 322.94125 * 12 11 9 43 43 H 1.09004 * 110.36164 * 85.14898 * 12 11 9 44 44 H 1.08998 * 109.47394 * 172.19820 * 15 13 12 45 45 H 1.08996 * 109.46838 * 292.19667 * 15 13 12 46 46 H 1.09000 * 109.46980 * 52.19595 * 15 13 12 47 47 H 0.97004 * 119.99469 * 340.02536 * 18 16 13 48 48 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.88548 * 59.56087 * 27 11 9 50 50 H 1.08995 * 110.01292 * 298.45786 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6351 -2.1954 1.1880 6 7 2.1239 -2.8861 2.3839 7 6 1.3871 -3.6054 3.2542 8 6 2.2448 -4.0668 4.2120 9 6 1.8752 -4.9025 5.3702 10 8 0.7179 -5.2387 5.5327 11 7 2.8203 -5.2942 6.2475 12 6 2.5913 -6.1270 7.4423 13 6 3.7622 -5.7825 8.3962 14 1 3.5654 -4.8574 8.9381 15 6 4.0381 -6.9347 9.3643 16 6 4.9355 -5.6027 7.3969 17 1 5.3733 -6.5659 7.1346 18 7 5.9538 -4.7057 7.9491 19 6 7.2274 -4.7239 7.4464 20 1 7.4811 -5.3992 6.6427 21 6 8.1920 -3.8737 7.9692 22 7 9.4164 -3.8915 7.4864 23 14 7.7548 -2.7102 9.3637 24 1 7.2854 -1.4183 8.8016 25 1 6.6774 -3.3111 10.1903 26 1 8.9540 -2.4762 10.2077 27 6 4.2506 -4.9627 6.1709 28 7 3.4813 -3.6257 3.9242 29 7 3.4480 -2.9266 2.8434 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6053 -0.2616 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 2.0698 -2.6550 0.3003 40 1 0.5488 -2.2723 1.1421 41 1 0.3231 -3.7834 3.2032 42 1 1.6376 -5.8727 7.9049 43 1 2.6138 -7.1842 7.1777 44 1 4.9478 -6.7262 9.9274 45 1 3.2000 -7.0387 10.0534 46 1 4.1629 -7.8599 8.8018 47 1 5.7257 -4.0990 8.6707 48 1 10.0906 -3.2976 7.8520 49 1 4.3822 -3.8809 6.1957 50 1 4.6787 -5.3672 5.2538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939132202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:27 Heat of formation + Delta-G solvation = 43.941707 kcal Electronic energy + Delta-G solvation = -29030.052752 eV Core-core repulsion = 25093.630319 eV Total energy + Delta-G solvation = -3936.422433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.25603 -40.95019 -38.94698 -38.16175 -35.97179 -35.26839 -33.94793 -32.89842 -32.03052 -30.43177 -29.45416 -28.04482 -27.59064 -25.73938 -25.58401 -24.28232 -22.88260 -22.53597 -21.59120 -21.01955 -20.60800 -19.50139 -18.63557 -17.56136 -17.41949 -17.07623 -16.72079 -16.28525 -16.19754 -15.83766 -15.65262 -15.11940 -14.92552 -14.86089 -14.59654 -14.57503 -14.24359 -14.12163 -13.78645 -13.62560 -13.28576 -13.21642 -13.13895 -12.97922 -12.93326 -12.87523 -12.55185 -12.27632 -12.15754 -12.05413 -11.94671 -11.89211 -11.78811 -11.60453 -11.53532 -11.45992 -11.26508 -11.25196 -10.94535 -10.38480 -9.66164 -9.34560 -7.99822 -5.34430 0.14088 0.61141 1.11195 1.38568 1.42319 1.48770 1.91748 2.18352 2.50082 3.07791 3.27972 3.30382 3.48070 3.65138 3.72954 3.76193 3.86635 3.92473 3.96068 4.01857 4.13880 4.21992 4.29617 4.34157 4.42726 4.46747 4.58187 4.65219 4.71206 4.71811 4.79790 4.85133 4.92481 4.95544 5.00789 5.03668 5.07864 5.11701 5.17101 5.25176 5.27634 5.33192 5.41061 5.45968 5.49508 5.51804 5.79580 6.23612 6.38301 6.81873 7.07186 7.09316 7.82428 8.01809 9.21568 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.002942 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.699050 B = 9514.265747 C =11551.383440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.126 4.126 5 C 0.111 3.889 6 N -0.347 5.347 7 C 0.114 3.886 8 C -0.130 4.130 9 C 0.615 3.385 10 O -0.566 6.566 11 N -0.602 5.602 12 C 0.117 3.883 13 C -0.104 4.104 14 H 0.082 0.918 15 C -0.130 4.130 16 C 0.171 3.829 17 H 0.069 0.931 18 N -0.736 5.736 19 C -0.226 4.226 20 H 0.059 0.941 21 C -0.061 4.061 22 N -0.983 5.983 23 Si 0.950 3.050 24 H -0.286 1.286 25 H -0.246 1.246 26 H -0.296 1.296 27 C 0.105 3.895 28 N -0.227 5.227 29 N -0.096 5.096 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.144 0.856 41 H 0.244 0.756 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.367 0.633 48 H 0.257 0.743 49 H 0.055 0.945 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.954 3.768 -12.928 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 C -0.209 4.209 4 C -0.164 4.164 5 C -0.007 4.007 6 N -0.132 5.132 7 C -0.045 4.045 8 C -0.270 4.270 9 C 0.403 3.597 10 O -0.446 6.446 11 N -0.333 5.333 12 C -0.004 4.004 13 C -0.124 4.124 14 H 0.100 0.900 15 C -0.187 4.187 16 C 0.062 3.938 17 H 0.087 0.913 18 N -0.378 5.378 19 C -0.357 4.357 20 H 0.077 0.923 21 C -0.252 4.252 22 N -0.633 5.633 23 Si 0.777 3.223 24 H -0.212 1.212 25 H -0.170 1.170 26 H -0.223 1.223 27 C -0.021 4.021 28 N -0.100 5.100 29 N -0.076 5.076 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.162 0.838 41 H 0.260 0.740 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.201 0.799 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.976 4.028 -13.319 27.721 hybrid contribution -0.094 0.814 0.665 1.055 sum -24.070 4.843 -12.654 27.621 Atomic orbital electron populations 1.21963 0.93814 1.02871 1.02371 1.21025 0.96816 0.96023 0.96696 1.21856 1.00831 0.95992 1.02200 1.21921 1.01784 0.92823 0.99912 1.22665 1.02765 0.92488 0.82790 1.50927 1.06786 1.34648 1.20803 1.23863 1.00832 0.91596 0.88175 1.21554 0.90586 1.11913 1.02943 1.16567 0.83818 0.78755 0.80588 1.90745 1.18454 1.59266 1.76175 1.48302 1.08607 1.50776 1.25662 1.22429 0.99071 0.95195 0.83724 1.22596 0.93217 1.00813 0.95782 0.90004 1.21604 1.02151 0.96491 0.98490 1.21468 0.88184 0.92840 0.91356 0.91319 1.42606 1.07141 1.46055 1.41998 1.18990 0.86256 1.16772 1.13665 0.92323 1.25444 0.95385 1.01827 1.02547 1.69885 1.03569 1.43059 1.46803 0.85484 0.77537 0.79288 0.79944 1.21240 1.17009 1.22275 1.22785 0.78730 1.00348 1.00275 1.74914 1.21318 1.06436 1.07290 1.81989 0.97700 1.20070 1.07850 0.91788 0.90985 0.92870 0.89638 0.93328 0.91421 0.93089 0.91853 0.92239 0.86841 0.83833 0.73984 0.89314 0.89593 0.93046 0.90221 0.91590 0.79884 0.93427 0.92610 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.95 71.98 0.64 -0.19 16 2 C -0.09 -0.71 2.92 -10.80 -0.03 -0.74 16 3 C -0.15 -1.57 9.19 71.98 0.66 -0.91 16 4 C -0.13 -1.56 4.89 30.59 0.15 -1.41 16 5 C 0.11 1.13 6.29 86.38 0.54 1.68 16 6 N -0.35 -7.11 3.69 -347.09 -1.28 -8.39 16 7 C 0.11 2.35 11.27 83.85 0.95 3.30 16 8 C -0.13 -3.97 6.85 40.82 0.28 -3.69 16 9 C 0.61 20.19 7.85 86.69 0.68 20.87 16 10 O -0.57 -19.18 17.12 -4.05 -0.07 -19.25 16 11 N -0.60 -19.84 3.33 -815.54 -2.71 -22.55 16 12 C 0.12 3.18 6.37 86.85 0.55 3.73 16 13 C -0.10 -3.00 3.25 -9.40 -0.03 -3.03 16 14 H 0.08 2.39 8.00 -2.38 -0.02 2.37 16 15 C -0.13 -3.12 9.31 71.98 0.67 -2.45 16 16 C 0.17 6.47 3.06 46.18 0.14 6.61 16 17 H 0.07 2.67 8.02 -2.39 -0.02 2.65 16 18 N -0.74 -34.01 4.98 -317.31 -1.58 -35.59 16 19 C -0.23 -12.85 10.46 84.03 0.88 -11.97 16 20 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 21 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 22 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 23 Si 0.95 45.96 27.74 68.60 1.90 47.86 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 C 0.10 3.99 5.27 86.73 0.46 4.45 16 28 N -0.23 -8.11 9.78 -49.99 -0.49 -8.60 16 29 N -0.10 -3.02 13.65 37.02 0.51 -2.51 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.16 6.56 -2.39 -0.02 0.15 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.14 0.38 6.51 -2.39 -0.02 0.37 16 41 H 0.24 2.73 8.06 -2.91 -0.02 2.70 16 42 H 0.09 2.22 8.04 -2.38 -0.02 2.20 16 43 H 0.09 2.08 7.99 -2.38 -0.02 2.06 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 47 H 0.37 16.35 5.57 -92.71 -0.52 15.83 16 48 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 49 H 0.06 2.41 7.50 -2.39 -0.02 2.39 16 50 H 0.05 2.15 7.74 -2.39 -0.02 2.13 16 Total: -1.00 -78.48 404.40 3.94 -74.55 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.35 Total: 24.83 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 7.01 Total: 13.11 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -5.26 Total: -141.09 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.07 Total: -19.25 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Total: -78.48 3.94 -74.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939132202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.488 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds