Wall clock time and date at job start Wed Apr 1 2020 01:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47510 * 2 1 4 4 C 1.53006 * 109.47380 * 120.00041 * 2 1 3 5 5 C 1.52994 * 109.46798 * 64.99457 * 4 2 1 6 6 N 1.46510 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.59365 * 125.00487 * 6 5 4 8 8 C 1.36596 * 106.83943 * 180.02562 * 7 6 5 9 9 C 1.47520 * 125.77278 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99851 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00486 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.65510 * 179.97438 * 11 9 8 13 13 C 1.54319 * 107.27536 * 181.10480 * 12 11 9 14 14 H 1.09002 * 110.72059 * 263.83086 * 13 12 11 15 15 C 1.53001 * 110.87401 * 140.62577 * 13 12 11 16 16 C 1.55162 * 102.94182 * 22.19457 * 13 12 11 17 17 H 1.09004 * 111.00046 * 206.38876 * 16 13 12 18 18 N 1.46501 * 111.00400 * 82.57222 * 16 13 12 19 19 C 1.36932 * 119.99720 * 155.00299 * 18 16 13 20 20 H 1.08009 * 120.00252 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00195 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99413 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00241 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46956 * 60.00321 * 23 21 19 25 25 H 1.48501 * 109.47223 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47644 * 300.00161 * 23 21 19 27 27 C 1.47422 * 125.64414 * 0.02579 * 11 9 8 28 28 N 1.34399 * 108.45554 * 0.24126 * 8 7 6 29 29 N 1.28761 * 109.52623 * 359.58764 * 28 8 7 30 30 H 1.09005 * 109.46952 * 60.00008 * 1 2 3 31 31 H 1.08993 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47021 * 300.00347 * 1 2 3 33 33 H 1.09004 * 109.47021 * 239.99652 * 2 1 3 34 34 H 1.08998 * 109.47262 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47007 * 299.99959 * 3 2 1 36 36 H 1.09004 * 109.47262 * 59.99800 * 3 2 1 37 37 H 1.08998 * 109.46583 * 305.00190 * 4 2 1 38 38 H 1.08992 * 109.47330 * 185.00182 * 4 2 1 39 39 H 1.08993 * 109.47406 * 60.00828 * 5 4 2 40 40 H 1.09000 * 109.48000 * 300.00176 * 5 4 2 41 41 H 1.08001 * 126.58265 * 0.02562 * 7 6 5 42 42 H 1.09001 * 109.88087 * 61.68467 * 12 11 9 43 43 H 1.09003 * 109.87911 * 300.52619 * 12 11 9 44 44 H 1.09006 * 109.47176 * 303.95054 * 15 13 12 45 45 H 1.09005 * 109.47062 * 63.94737 * 15 13 12 46 46 H 1.08998 * 109.47130 * 183.94976 * 15 13 12 47 47 H 0.97001 * 119.99779 * 334.99691 * 18 16 13 48 48 H 0.97000 * 119.99503 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.37241 * 36.98803 * 27 11 9 50 50 H 1.08998 * 110.46196 * 274.70952 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1231 -2.8859 2.3845 7 6 1.3857 -3.6051 3.2542 8 6 2.2424 -4.0653 4.2134 9 6 1.8719 -4.9005 5.3716 10 8 0.7146 -5.2365 5.5335 11 7 2.8161 -5.2910 6.2504 12 6 2.5867 -6.1200 7.4428 13 6 3.9458 -6.2845 8.1549 14 1 4.4220 -7.2213 7.8655 15 6 3.7777 -6.2118 9.6739 16 6 4.7602 -5.0708 7.6341 17 1 5.8300 -5.2785 7.6593 18 7 4.4449 -3.8605 8.3970 19 6 5.3581 -2.8432 8.4753 20 1 6.3111 -2.9333 7.9750 21 6 5.0592 -1.6961 9.1976 22 7 3.8976 -1.5862 9.8069 23 14 6.3052 -0.3087 9.3050 24 1 6.6044 0.1946 7.9403 25 1 5.7478 0.7947 10.1278 26 1 7.5538 -0.8121 9.9317 27 6 4.2500 -4.9569 6.1758 28 7 3.4790 -3.6237 3.9268 29 7 3.4466 -2.9253 2.8455 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2617 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 2.0698 -2.6550 0.3004 40 1 0.5489 -2.2724 1.1421 41 1 0.3217 -3.7832 3.2025 42 1 2.2025 -7.0963 7.1471 43 1 1.8776 -5.6259 8.1069 44 1 3.2893 -5.2746 9.9410 45 1 3.1671 -7.0489 10.0124 46 1 4.7567 -6.2600 10.1506 47 1 3.5891 -3.7798 8.8465 48 1 3.6886 -0.7845 10.3113 49 1 4.3840 -3.9405 5.8055 50 1 4.7736 -5.6657 5.5343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939132204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:36 Heat of formation + Delta-G solvation = 67.391449 kcal Electronic energy + Delta-G solvation = -29460.957565 eV Core-core repulsion = 25525.551990 eV Total energy + Delta-G solvation = -3935.405576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.08503 -39.44828 -37.60415 -37.32764 -34.38485 -33.73830 -32.27793 -30.93350 -30.37887 -29.54091 -27.63428 -27.60010 -26.23427 -24.75493 -23.82015 -23.15135 -21.85818 -21.46076 -20.45863 -19.36207 -19.12830 -17.61458 -17.11810 -16.19630 -16.12047 -15.80322 -15.63075 -15.10787 -14.69468 -14.50697 -14.35577 -14.02470 -13.87714 -13.60454 -13.50362 -12.94957 -12.86726 -12.71460 -12.60216 -12.41723 -12.17782 -12.01793 -11.92799 -11.72048 -11.55935 -11.40083 -11.17906 -11.06826 -11.02335 -10.87759 -10.81869 -10.58951 -10.32196 -10.25388 -10.16841 -9.86488 -9.73772 -9.54575 -9.15300 -8.91797 -8.10174 -6.92055 -5.73350 -3.01874 1.22598 1.97130 2.03387 3.38024 3.47075 3.51584 3.52347 3.64588 4.04882 4.27537 4.35929 4.46140 4.56605 4.61997 4.73542 4.81054 4.84897 5.01040 5.17241 5.19053 5.23331 5.29585 5.32018 5.42533 5.43197 5.45374 5.53590 5.59153 5.67892 5.74551 5.78579 5.82063 5.89985 5.94433 5.96216 6.02952 6.13100 6.34517 6.36726 6.38718 6.47174 6.51161 6.73242 6.75939 7.00084 7.05761 7.74318 7.95222 8.10251 8.44614 8.53505 9.56385 10.12411 10.47356 11.48908 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.003388 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.795246 B = 8261.586938 C =10449.445884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.131 4.131 5 C 0.122 3.878 6 N -0.364 5.364 7 C 0.085 3.915 8 C -0.087 4.087 9 C 0.614 3.386 10 O -0.557 6.557 11 N -0.586 5.586 12 C 0.118 3.882 13 C -0.116 4.116 14 H 0.079 0.921 15 C -0.130 4.130 16 C 0.169 3.831 17 H 0.074 0.926 18 N -0.708 5.708 19 C -0.239 4.239 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.069 3.931 28 N -0.189 5.189 29 N -0.068 5.068 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.201 0.799 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.386 0.614 48 H 0.255 0.745 49 H 0.102 0.898 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 -3.124 -19.249 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.149 5.149 7 C -0.071 4.071 8 C -0.226 4.226 9 C 0.401 3.599 10 O -0.437 6.437 11 N -0.316 5.316 12 C -0.005 4.005 13 C -0.136 4.136 14 H 0.097 0.903 15 C -0.188 4.188 16 C 0.057 3.943 17 H 0.092 0.908 18 N -0.348 5.348 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.212 1.212 27 C -0.056 4.056 28 N -0.063 5.063 29 N -0.048 5.048 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.218 0.782 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.221 0.779 48 H 0.065 0.935 49 H 0.120 0.880 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.531 -2.660 -19.472 20.416 hybrid contribution -0.729 0.718 0.177 1.039 sum -6.261 -1.942 -19.295 20.378 Atomic orbital electron populations 1.21966 0.95020 1.01833 1.02358 1.21058 0.95955 0.96746 0.97374 1.21828 1.01370 0.95337 1.02044 1.21993 1.03313 0.92298 0.99347 1.22123 1.00437 0.93301 0.84017 1.50539 1.08155 1.35863 1.20371 1.23270 0.99709 0.93971 0.90180 1.21397 0.89921 1.09874 1.01418 1.16337 0.84080 0.79051 0.80468 1.90756 1.18329 1.58575 1.75999 1.48071 1.09406 1.49912 1.24201 1.21983 0.98101 0.94034 0.86337 1.22549 0.95130 0.99495 0.96424 0.90314 1.21592 1.01939 1.01782 0.93511 1.21417 0.96962 0.87105 0.88853 0.90802 1.42337 1.19227 1.14367 1.58845 1.19207 0.96703 0.94886 1.26253 0.91050 1.24716 0.97064 0.98345 1.00507 1.69659 1.21788 1.28640 1.37839 0.86297 0.80575 0.82077 0.77418 1.21301 1.21842 1.21233 1.23633 0.78798 1.02414 1.00797 1.74816 1.20107 1.05526 1.05839 1.81994 0.95439 1.19636 1.07775 0.92344 0.92569 0.92281 0.90722 0.92327 0.92440 0.92410 0.90742 0.89788 0.88599 0.87854 0.78218 0.92184 0.91276 0.91099 0.93870 0.92254 0.77873 0.93531 0.88027 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.95 37.16 0.33 -0.46 16 2 C -0.09 -0.54 2.92 -90.62 -0.26 -0.80 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C -0.13 -1.03 4.89 -26.73 -0.13 -1.16 16 5 C 0.12 0.91 6.30 -4.04 -0.03 0.88 16 6 N -0.36 -4.44 3.69 -61.06 -0.23 -4.67 16 7 C 0.09 1.13 11.27 -16.84 -0.19 0.94 16 8 C -0.09 -1.51 6.84 -83.55 -0.57 -2.08 16 9 C 0.61 11.90 7.85 -12.48 -0.10 11.80 16 10 O -0.56 -11.54 17.19 5.28 0.09 -11.45 16 11 N -0.59 -11.11 3.33 -171.75 -0.57 -11.68 16 12 C 0.12 2.04 6.46 -3.07 -0.02 2.02 16 13 C -0.12 -1.89 3.41 -88.78 -0.30 -2.19 16 14 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.13 -2.14 8.76 37.16 0.33 -1.82 16 16 C 0.17 3.31 3.47 -65.78 -0.23 3.08 16 17 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 18 N -0.71 -17.32 4.58 -51.34 -0.23 -17.55 16 19 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.07 1.32 5.82 -2.53 -0.01 1.30 16 28 N -0.19 -3.46 9.39 32.85 0.31 -3.15 16 29 N -0.07 -1.10 13.65 60.35 0.82 -0.28 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 6.56 -51.93 -0.34 -0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.50 6.51 -51.93 -0.34 0.17 16 41 H 0.20 1.95 8.06 -52.49 -0.42 1.53 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.29 7.81 -51.93 -0.41 0.89 16 44 H 0.07 1.38 6.44 -51.93 -0.33 1.04 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.39 10.22 6.36 -40.82 -0.26 9.96 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.10 2.21 6.13 -51.93 -0.32 1.89 16 50 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -33.81 403.41 -7.42 -41.23 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.30 Total: 7.52 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -1.09 Total: 3.82 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.82 Total: -64.75 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.81 -7.42 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939132204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.621 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds