Wall clock time and date at job start Wed Apr 1 2020 01:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47510 * 2 1 4 4 C 1.53006 * 109.47380 * 120.00041 * 2 1 3 5 5 C 1.52994 * 109.46798 * 64.99457 * 4 2 1 6 6 N 1.46510 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.59365 * 125.00487 * 6 5 4 8 8 C 1.36596 * 106.83943 * 180.02562 * 7 6 5 9 9 C 1.47520 * 125.77278 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99851 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00486 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.65510 * 179.97438 * 11 9 8 13 13 C 1.54319 * 107.27536 * 181.10480 * 12 11 9 14 14 H 1.09002 * 110.72059 * 263.83086 * 13 12 11 15 15 C 1.53001 * 110.87401 * 140.62577 * 13 12 11 16 16 C 1.55162 * 102.94182 * 22.19457 * 13 12 11 17 17 H 1.09004 * 111.00046 * 206.38876 * 16 13 12 18 18 N 1.46501 * 111.00400 * 82.57222 * 16 13 12 19 19 C 1.36932 * 119.99720 * 155.00299 * 18 16 13 20 20 H 1.08009 * 120.00252 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00195 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99413 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00241 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46956 * 60.00321 * 23 21 19 25 25 H 1.48501 * 109.47223 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47644 * 300.00161 * 23 21 19 27 27 C 1.47422 * 125.64414 * 0.02579 * 11 9 8 28 28 N 1.34399 * 108.45554 * 0.24126 * 8 7 6 29 29 N 1.28761 * 109.52623 * 359.58764 * 28 8 7 30 30 H 1.09005 * 109.46952 * 60.00008 * 1 2 3 31 31 H 1.08993 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47021 * 300.00347 * 1 2 3 33 33 H 1.09004 * 109.47021 * 239.99652 * 2 1 3 34 34 H 1.08998 * 109.47262 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47007 * 299.99959 * 3 2 1 36 36 H 1.09004 * 109.47262 * 59.99800 * 3 2 1 37 37 H 1.08998 * 109.46583 * 305.00190 * 4 2 1 38 38 H 1.08992 * 109.47330 * 185.00182 * 4 2 1 39 39 H 1.08993 * 109.47406 * 60.00828 * 5 4 2 40 40 H 1.09000 * 109.48000 * 300.00176 * 5 4 2 41 41 H 1.08001 * 126.58265 * 0.02562 * 7 6 5 42 42 H 1.09001 * 109.88087 * 61.68467 * 12 11 9 43 43 H 1.09003 * 109.87911 * 300.52619 * 12 11 9 44 44 H 1.09006 * 109.47176 * 303.95054 * 15 13 12 45 45 H 1.09005 * 109.47062 * 63.94737 * 15 13 12 46 46 H 1.08998 * 109.47130 * 183.94976 * 15 13 12 47 47 H 0.97001 * 119.99779 * 334.99691 * 18 16 13 48 48 H 0.97000 * 119.99503 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.37241 * 36.98803 * 27 11 9 50 50 H 1.08998 * 110.46196 * 274.70952 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6352 -2.1954 1.1880 6 7 2.1231 -2.8859 2.3845 7 6 1.3857 -3.6051 3.2542 8 6 2.2424 -4.0653 4.2134 9 6 1.8719 -4.9005 5.3716 10 8 0.7146 -5.2365 5.5335 11 7 2.8161 -5.2910 6.2504 12 6 2.5867 -6.1200 7.4428 13 6 3.9458 -6.2845 8.1549 14 1 4.4220 -7.2213 7.8655 15 6 3.7777 -6.2118 9.6739 16 6 4.7602 -5.0708 7.6341 17 1 5.8300 -5.2785 7.6593 18 7 4.4449 -3.8605 8.3970 19 6 5.3581 -2.8432 8.4753 20 1 6.3111 -2.9333 7.9750 21 6 5.0592 -1.6961 9.1976 22 7 3.8976 -1.5862 9.8069 23 14 6.3052 -0.3087 9.3050 24 1 6.6044 0.1946 7.9403 25 1 5.7478 0.7947 10.1278 26 1 7.5538 -0.8121 9.9317 27 6 4.2500 -4.9569 6.1758 28 7 3.4790 -3.6237 3.9268 29 7 3.4466 -2.9253 2.8455 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2617 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 2.0698 -2.6550 0.3004 40 1 0.5489 -2.2724 1.1421 41 1 0.3217 -3.7832 3.2025 42 1 2.2025 -7.0963 7.1471 43 1 1.8776 -5.6259 8.1069 44 1 3.2893 -5.2746 9.9410 45 1 3.1671 -7.0489 10.0124 46 1 4.7567 -6.2600 10.1506 47 1 3.5891 -3.7798 8.8465 48 1 3.6886 -0.7845 10.3113 49 1 4.3840 -3.9405 5.8055 50 1 4.7736 -5.6657 5.5343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939132204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:35 Heat of formation + Delta-G solvation = 45.459797 kcal Electronic energy + Delta-G solvation = -29461.908593 eV Core-core repulsion = 25525.551990 eV Total energy + Delta-G solvation = -3936.356604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.23385 -40.90472 -38.91219 -38.15764 -35.68594 -35.23426 -33.84019 -32.31735 -31.95565 -30.41804 -29.32936 -28.05101 -27.54884 -25.80110 -25.57207 -24.54660 -23.03009 -22.70442 -21.02529 -20.66286 -20.59063 -19.40270 -18.48330 -17.47366 -17.34716 -17.05993 -16.59972 -16.38539 -16.10384 -15.72632 -15.64660 -15.38389 -14.93775 -14.66255 -14.59795 -14.42508 -14.12428 -14.03257 -13.58090 -13.45052 -13.25368 -13.12679 -13.07484 -12.95387 -12.88292 -12.77967 -12.49984 -12.27280 -12.20230 -12.17798 -11.94699 -11.82063 -11.60228 -11.53883 -11.46741 -11.34532 -11.24542 -11.19478 -10.90062 -10.35946 -9.62179 -8.92089 -7.90584 -5.17384 0.14722 0.64743 1.11756 1.46697 1.49538 1.54716 2.00543 2.25490 2.57976 3.15498 3.29486 3.40793 3.58726 3.73023 3.79716 3.93064 3.95164 3.96697 4.00677 4.01953 4.15090 4.21645 4.29509 4.41877 4.48246 4.58416 4.69134 4.71526 4.74320 4.78977 4.81444 4.85374 4.94609 4.95616 5.03080 5.03953 5.06522 5.08950 5.26752 5.28221 5.32098 5.40485 5.45765 5.47781 5.51453 5.56440 5.63922 6.30801 6.49147 6.85027 7.12332 7.37898 8.13723 8.36604 9.32643 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.003388 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.795246 B = 8261.586938 C =10449.445884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.152 4.152 4 C -0.127 4.127 5 C 0.112 3.888 6 N -0.347 5.347 7 C 0.108 3.892 8 C -0.124 4.124 9 C 0.607 3.393 10 O -0.579 6.579 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.100 4.100 14 H 0.118 0.882 15 C -0.124 4.124 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.717 5.717 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.074 4.074 22 N -0.970 5.970 23 Si 0.966 3.034 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.274 1.274 27 C 0.083 3.917 28 N -0.220 5.220 29 N -0.092 5.092 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.238 0.762 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.373 0.627 48 H 0.247 0.753 49 H 0.072 0.928 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -4.395 -21.458 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 C -0.209 4.209 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.132 5.132 7 C -0.050 4.050 8 C -0.263 4.263 9 C 0.395 3.605 10 O -0.460 6.460 11 N -0.323 5.323 12 C -0.006 4.006 13 C -0.119 4.119 14 H 0.136 0.864 15 C -0.182 4.182 16 C 0.047 3.953 17 H 0.102 0.898 18 N -0.356 5.356 19 C -0.363 4.363 20 H 0.096 0.904 21 C -0.266 4.266 22 N -0.621 5.621 23 Si 0.796 3.204 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.200 1.200 27 C -0.043 4.043 28 N -0.093 5.093 29 N -0.072 5.072 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.255 0.745 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.206 0.794 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.736 -3.954 -21.734 22.823 hybrid contribution -0.692 1.100 0.731 1.491 sum -6.428 -2.853 -21.004 22.150 Atomic orbital electron populations 1.21974 0.94074 1.02848 1.02258 1.21024 0.96623 0.96023 0.96711 1.21862 1.00957 0.96005 1.02084 1.21936 1.01925 0.92946 0.99776 1.22659 1.02680 0.92410 0.82850 1.50854 1.06835 1.34689 1.20797 1.23779 1.00718 0.92015 0.88534 1.21439 0.90882 1.11635 1.02389 1.16683 0.83865 0.78966 0.80978 1.90721 1.18888 1.59563 1.76783 1.48197 1.09366 1.50125 1.24579 1.22078 0.98300 0.94570 0.85668 1.22528 0.93989 0.99377 0.96022 0.86410 1.21514 1.01956 1.01015 0.93714 1.21708 0.98142 0.86630 0.88846 0.89787 1.42462 1.18202 1.15518 1.59438 1.19604 0.97062 0.95288 1.24395 0.90377 1.25447 0.98831 1.00887 1.01435 1.69824 1.23763 1.28920 1.39549 0.85321 0.78834 0.79193 0.77096 1.21191 1.22621 1.19959 1.23379 0.79197 1.01495 1.00198 1.74780 1.21109 1.06522 1.06842 1.81887 0.97639 1.19986 1.07664 0.91591 0.90985 0.93305 0.89126 0.93065 0.91268 0.93515 0.92574 0.91873 0.86223 0.84285 0.74549 0.89864 0.93502 0.94842 0.90886 0.92383 0.79386 0.94391 0.90955 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.95 71.98 0.64 -0.54 16 2 C -0.08 -0.83 2.92 -10.79 -0.03 -0.86 16 3 C -0.15 -1.81 9.19 71.98 0.66 -1.15 16 4 C -0.13 -1.86 4.89 30.59 0.15 -1.71 16 5 C 0.11 1.35 6.30 86.38 0.54 1.89 16 6 N -0.35 -7.89 3.69 -347.10 -1.28 -9.17 16 7 C 0.11 2.66 11.27 83.85 0.95 3.61 16 8 C -0.12 -4.27 6.84 40.82 0.28 -3.99 16 9 C 0.61 23.52 7.85 86.69 0.68 24.20 16 10 O -0.58 -23.79 17.19 -4.02 -0.07 -23.86 16 11 N -0.59 -22.34 3.33 -815.57 -2.71 -25.06 16 12 C 0.12 3.90 6.46 86.73 0.56 4.46 16 13 C -0.10 -3.06 3.41 -9.61 -0.03 -3.09 16 14 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 15 C -0.12 -3.95 8.76 71.98 0.63 -3.32 16 16 C 0.16 6.04 3.47 46.39 0.16 6.20 16 17 H 0.08 3.06 8.09 -2.38 -0.02 3.04 16 18 N -0.72 -35.73 4.58 -316.34 -1.45 -37.18 16 19 C -0.23 -12.81 9.96 84.04 0.84 -11.98 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 23 Si 0.97 47.30 29.55 68.60 2.03 49.32 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 26 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 27 C 0.08 3.11 5.82 86.86 0.51 3.62 16 28 N -0.22 -8.09 9.39 -50.00 -0.47 -8.56 16 29 N -0.09 -2.94 13.65 37.02 0.51 -2.43 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.07 0.32 6.56 -2.39 -0.02 0.31 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.14 0.74 6.51 -2.39 -0.02 0.73 16 41 H 0.24 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.05 1.78 7.81 -2.39 -0.02 1.76 16 44 H 0.03 1.31 6.44 -2.38 -0.02 1.30 16 45 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.37 20.48 6.36 -92.71 -0.59 19.89 16 48 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.07 3.20 6.13 -2.39 -0.01 3.19 16 50 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -76.66 403.41 4.18 -72.48 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.34 Total: 31.21 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.00 Total: 13.51 kcal Atomic # 7 Polarization: -137.53 SS G_CDS: -5.12 Total: -142.66 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.07 Total: -23.86 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -76.66 4.18 -72.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939132204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.941 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds