Wall clock time and date at job start Wed Apr 1 2020 01:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 C 1.52994 * 109.47681 * 119.99926 * 2 1 3 5 5 C 1.53005 * 109.47637 * 174.99672 * 4 2 1 6 6 N 1.46494 * 109.47455 * 180.02562 * 5 4 2 7 7 C 1.34820 * 126.59452 * 124.99854 * 6 5 4 8 8 C 1.36590 * 106.83845 * 180.02562 * 7 6 5 9 9 C 1.47521 * 125.77065 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00131 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00301 * 180.02562 * 9 8 7 12 12 C 1.47023 * 125.64926 * 0.03914 * 11 9 8 13 13 C 1.54320 * 107.27576 * 181.02438 * 12 11 9 14 14 H 1.08990 * 110.72081 * 263.83328 * 13 12 11 15 15 N 1.46496 * 110.72131 * 140.55218 * 13 12 11 16 16 C 1.36937 * 120.00105 * 91.48188 * 15 13 12 17 17 H 1.08011 * 119.99816 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00719 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99432 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00509 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46634 * 60.00336 * 20 18 16 22 22 H 1.48505 * 109.47496 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47334 * 300.00675 * 20 18 16 24 24 C 1.55165 * 102.94006 * 22.19194 * 13 12 11 25 25 H 1.08999 * 111.03290 * 82.58574 * 24 13 12 26 26 C 1.52997 * 111.00426 * 206.42285 * 24 13 12 27 27 C 1.47424 * 125.64837 * 180.02562 * 11 9 8 28 28 N 1.34404 * 108.45998 * 0.24299 * 8 7 6 29 29 N 1.28757 * 109.52514 * 359.58840 * 28 8 7 30 30 H 1.09004 * 109.46763 * 299.99593 * 1 2 3 31 31 H 1.08997 * 109.47148 * 59.99853 * 1 2 3 32 32 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47136 * 240.00777 * 2 1 3 34 34 H 1.09007 * 109.47185 * 299.99939 * 3 2 1 35 35 H 1.08999 * 109.47213 * 60.00163 * 3 2 1 36 36 H 1.09008 * 109.47130 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47116 * 55.00132 * 4 2 1 38 38 H 1.09000 * 109.47427 * 295.00296 * 4 2 1 39 39 H 1.09004 * 109.46492 * 60.00078 * 5 4 2 40 40 H 1.09000 * 109.47222 * 300.00750 * 5 4 2 41 41 H 1.07998 * 126.57575 * 0.02562 * 7 6 5 42 42 H 1.09006 * 109.88301 * 300.44420 * 12 11 9 43 43 H 1.09003 * 109.88253 * 61.44811 * 12 11 9 44 44 H 0.97005 * 120.00849 * 271.48063 * 15 13 12 45 45 H 0.97002 * 120.00046 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.47153 * 173.64942 * 26 24 13 47 47 H 1.09001 * 109.46832 * 53.65133 * 26 24 13 48 48 H 1.09004 * 109.47261 * 293.65114 * 26 24 13 49 49 H 1.08992 * 110.37079 * 37.06522 * 27 11 9 50 50 H 1.08998 * 110.36708 * 274.74024 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5221 2.3836 7 6 4.8314 -2.6227 2.4144 8 6 5.0419 -2.9217 3.7305 9 6 5.8402 -4.0524 4.2409 10 8 6.3795 -4.8159 3.4632 11 7 5.9711 -4.2397 5.5691 12 6 5.3740 -3.3978 6.6161 13 6 5.8146 -3.9773 7.9769 14 1 5.0487 -4.6396 8.3802 15 7 6.1228 -2.9020 8.9228 16 6 5.1461 -2.4189 9.7522 17 1 4.1483 -2.8303 9.7085 18 6 5.4381 -1.4004 10.6489 19 7 6.6538 -0.8987 10.7018 20 14 4.1055 -0.7408 11.7797 21 1 3.5966 -1.8401 12.6386 22 1 4.6694 0.3344 12.6349 23 1 2.9914 -0.1930 10.9649 24 6 7.0957 -4.7752 7.6163 25 1 7.9647 -4.1190 7.5686 26 6 7.3279 -5.9169 8.6080 27 6 6.7364 -5.3229 6.2128 28 7 4.3937 -2.0152 4.4818 29 7 3.8008 -1.1666 3.7163 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6055 -1.7198 1.2951 38 1 1.7517 -0.1583 2.1369 39 1 3.9995 0.1676 1.1419 40 1 3.8533 -1.3939 0.3001 41 1 5.2147 -3.1639 1.5621 42 1 5.7315 -2.3729 6.5165 43 1 4.2872 -3.4207 6.5353 44 1 7.0187 -2.5322 8.9619 45 1 6.8578 -0.1867 11.3281 46 1 8.1651 -6.5274 8.2696 47 1 6.4307 -6.5327 8.6696 48 1 7.5534 -5.5039 9.5913 49 1 7.6423 -5.5363 5.6455 50 1 6.1233 -6.2198 6.3014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939132205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:39 Heat of formation + Delta-G solvation = 62.603809 kcal Electronic energy + Delta-G solvation = -28928.388739 eV Core-core repulsion = 24992.775555 eV Total energy + Delta-G solvation = -3935.613184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.18085 -39.52512 -37.66265 -37.37363 -34.47202 -33.94596 -32.40959 -31.02735 -30.60097 -29.64041 -27.64969 -27.40740 -26.39165 -24.83234 -24.00479 -23.04349 -21.91333 -21.24619 -20.47683 -19.85293 -19.38409 -17.50902 -17.06356 -16.52453 -16.23283 -15.91049 -15.60263 -15.13201 -14.76508 -14.57335 -14.48727 -14.21581 -13.90820 -13.45976 -13.44749 -13.06669 -13.03194 -12.75645 -12.57365 -12.47120 -12.34823 -12.16025 -12.10299 -11.81331 -11.55159 -11.43902 -11.26062 -11.19994 -11.08709 -11.00916 -10.87270 -10.56995 -10.51808 -10.32788 -10.19010 -9.98690 -9.84898 -9.63107 -9.26059 -8.88858 -8.21869 -6.98441 -5.75284 -3.05014 1.12551 1.86066 1.94607 3.24224 3.47424 3.47807 3.51789 3.52772 3.97444 4.19781 4.25027 4.39956 4.45978 4.59366 4.67167 4.71087 4.83980 4.90756 5.08271 5.12649 5.15068 5.20585 5.26758 5.31108 5.35182 5.42008 5.48422 5.50271 5.66524 5.67060 5.72218 5.79201 5.80917 5.87873 5.90432 5.97812 6.02008 6.10087 6.29333 6.31063 6.36945 6.55866 6.65934 6.70734 6.73691 7.03230 7.72482 7.82121 8.00531 8.37464 8.42613 9.54182 10.08433 10.43476 11.46871 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.002888 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.470756 B = 9691.988859 C =12056.272408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.365 5.365 7 C 0.086 3.914 8 C -0.094 4.094 9 C 0.613 3.387 10 O -0.558 6.558 11 N -0.596 5.596 12 C 0.082 3.918 13 C 0.175 3.825 14 H 0.068 0.932 15 N -0.709 5.709 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.285 1.285 24 C -0.116 4.116 25 H 0.083 0.917 26 C -0.132 4.132 27 C 0.115 3.885 28 N -0.187 5.187 29 N -0.064 5.064 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.201 0.799 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -2.273 -23.270 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.212 4.212 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.149 5.149 7 C -0.071 4.071 8 C -0.233 4.233 9 C 0.400 3.600 10 O -0.437 6.437 11 N -0.327 5.327 12 C -0.044 4.044 13 C 0.063 3.937 14 H 0.086 0.914 15 N -0.349 5.349 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.211 1.211 24 C -0.136 4.136 25 H 0.102 0.898 26 C -0.189 4.189 27 C -0.007 4.007 28 N -0.060 5.060 29 N -0.044 5.044 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.218 0.782 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.180 -1.573 -22.702 23.863 hybrid contribution -0.038 0.119 -0.217 0.251 sum -7.218 -1.454 -22.919 24.073 Atomic orbital electron populations 1.21827 0.94507 1.02022 1.02190 1.21054 0.96462 0.96421 0.97184 1.21961 1.01059 0.95752 1.02404 1.21986 0.92489 1.02331 1.00036 1.22147 0.96483 0.98555 0.82863 1.50606 1.35023 1.20187 1.09119 1.23284 0.94291 0.89647 0.99886 1.21424 1.09469 1.02124 0.90323 1.16397 0.79776 0.82597 0.81269 1.90757 1.50024 1.46830 1.56061 1.48306 1.49993 1.29805 1.04643 1.23417 0.97926 0.95387 0.87641 1.21309 0.94000 0.90184 0.88236 0.91433 1.42324 1.11817 1.40161 1.40574 1.19206 0.91665 1.14229 1.12212 0.91053 1.24734 0.96565 0.99212 1.00058 1.69654 1.18623 1.29769 1.39882 0.86275 0.81067 0.78356 0.80540 1.21262 1.21767 1.21136 1.22670 1.00065 0.97936 0.92918 0.89849 1.21592 1.00823 0.96987 0.99531 1.22297 0.95689 0.89683 0.93078 1.74932 1.04765 1.00478 1.25874 1.82068 1.20924 1.19112 0.82328 0.92307 0.92376 0.92555 0.90857 0.92387 0.92108 0.92490 0.90951 0.89724 0.88257 0.87968 0.78179 0.90171 0.91722 0.77925 0.93436 0.93277 0.92820 0.91404 0.90807 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.09 -0.45 2.92 -90.63 -0.26 -0.71 16 3 C -0.15 -0.76 8.95 37.16 0.33 -0.42 16 4 C -0.13 -0.85 4.89 -26.73 -0.13 -0.98 16 5 C 0.12 0.79 6.30 -4.04 -0.03 0.76 16 6 N -0.36 -4.08 3.69 -61.06 -0.23 -4.31 16 7 C 0.09 1.01 11.27 -16.83 -0.19 0.82 16 8 C -0.09 -1.50 6.85 -83.55 -0.57 -2.07 16 9 C 0.61 10.74 7.85 -12.48 -0.10 10.64 16 10 O -0.56 -10.36 17.12 5.28 0.09 -10.27 16 11 N -0.60 -10.46 3.33 -171.76 -0.57 -11.03 16 12 C 0.08 1.58 5.27 -3.07 -0.02 1.56 16 13 C 0.18 3.45 3.08 -66.10 -0.20 3.25 16 14 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 15 N -0.71 -17.37 5.15 -51.65 -0.27 -17.63 16 16 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.12 -1.90 3.27 -88.48 -0.29 -2.19 16 25 H 0.08 1.45 8.01 -51.93 -0.42 1.04 16 26 C -0.13 -1.91 9.29 37.16 0.35 -1.56 16 27 C 0.12 1.79 6.38 -2.54 -0.02 1.77 16 28 N -0.19 -3.29 9.77 32.85 0.32 -2.97 16 29 N -0.06 -1.00 13.65 60.35 0.82 -0.17 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.25 6.57 -51.92 -0.34 -0.09 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.58 6.57 -51.93 -0.34 0.24 16 40 H 0.10 0.37 8.08 -51.93 -0.42 -0.05 16 41 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.08 1.75 7.51 -51.93 -0.39 1.36 16 43 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 44 H 0.39 10.12 7.76 -40.82 -0.32 9.80 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.73 8.11 -51.93 -0.42 0.30 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 50 H 0.07 0.96 8.03 -51.93 -0.42 0.55 16 LS Contribution 407.57 15.07 6.14 6.14 Total: -1.00 -33.28 407.57 -7.51 -40.79 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.49 Total: 5.94 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.03 Total: 3.31 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 0.81 Total: -63.30 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.28 -7.51 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939132205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.395 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds