Wall clock time and date at job start Wed Apr 1 2020 01:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 C 1.52994 * 109.47681 * 119.99926 * 2 1 3 5 5 C 1.53005 * 109.47637 * 174.99672 * 4 2 1 6 6 N 1.46494 * 109.47455 * 180.02562 * 5 4 2 7 7 C 1.34820 * 126.59452 * 124.99854 * 6 5 4 8 8 C 1.36590 * 106.83845 * 180.02562 * 7 6 5 9 9 C 1.47521 * 125.77065 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00131 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00301 * 180.02562 * 9 8 7 12 12 C 1.47023 * 125.64926 * 0.03914 * 11 9 8 13 13 C 1.54320 * 107.27576 * 181.02438 * 12 11 9 14 14 H 1.08990 * 110.72081 * 263.83328 * 13 12 11 15 15 N 1.46496 * 110.72131 * 140.55218 * 13 12 11 16 16 C 1.36937 * 120.00105 * 91.48188 * 15 13 12 17 17 H 1.08011 * 119.99816 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00719 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99432 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00509 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46634 * 60.00336 * 20 18 16 22 22 H 1.48505 * 109.47496 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47334 * 300.00675 * 20 18 16 24 24 C 1.55165 * 102.94006 * 22.19194 * 13 12 11 25 25 H 1.08999 * 111.03290 * 82.58574 * 24 13 12 26 26 C 1.52997 * 111.00426 * 206.42285 * 24 13 12 27 27 C 1.47424 * 125.64837 * 180.02562 * 11 9 8 28 28 N 1.34404 * 108.45998 * 0.24299 * 8 7 6 29 29 N 1.28757 * 109.52514 * 359.58840 * 28 8 7 30 30 H 1.09004 * 109.46763 * 299.99593 * 1 2 3 31 31 H 1.08997 * 109.47148 * 59.99853 * 1 2 3 32 32 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47136 * 240.00777 * 2 1 3 34 34 H 1.09007 * 109.47185 * 299.99939 * 3 2 1 35 35 H 1.08999 * 109.47213 * 60.00163 * 3 2 1 36 36 H 1.09008 * 109.47130 * 180.02562 * 3 2 1 37 37 H 1.09004 * 109.47116 * 55.00132 * 4 2 1 38 38 H 1.09000 * 109.47427 * 295.00296 * 4 2 1 39 39 H 1.09004 * 109.46492 * 60.00078 * 5 4 2 40 40 H 1.09000 * 109.47222 * 300.00750 * 5 4 2 41 41 H 1.07998 * 126.57575 * 0.02562 * 7 6 5 42 42 H 1.09006 * 109.88301 * 300.44420 * 12 11 9 43 43 H 1.09003 * 109.88253 * 61.44811 * 12 11 9 44 44 H 0.97005 * 120.00849 * 271.48063 * 15 13 12 45 45 H 0.97002 * 120.00046 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.47153 * 173.64942 * 26 24 13 47 47 H 1.09001 * 109.46832 * 53.65133 * 26 24 13 48 48 H 1.09004 * 109.47261 * 293.65114 * 26 24 13 49 49 H 1.08992 * 110.37079 * 37.06522 * 27 11 9 50 50 H 1.08998 * 110.36708 * 274.74024 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 7 4.0533 -1.5221 2.3836 7 6 4.8314 -2.6227 2.4144 8 6 5.0419 -2.9217 3.7305 9 6 5.8402 -4.0524 4.2409 10 8 6.3795 -4.8159 3.4632 11 7 5.9711 -4.2397 5.5691 12 6 5.3740 -3.3978 6.6161 13 6 5.8146 -3.9773 7.9769 14 1 5.0487 -4.6396 8.3802 15 7 6.1228 -2.9020 8.9228 16 6 5.1461 -2.4189 9.7522 17 1 4.1483 -2.8303 9.7085 18 6 5.4381 -1.4004 10.6489 19 7 6.6538 -0.8987 10.7018 20 14 4.1055 -0.7408 11.7797 21 1 3.5966 -1.8401 12.6386 22 1 4.6694 0.3344 12.6349 23 1 2.9914 -0.1930 10.9649 24 6 7.0957 -4.7752 7.6163 25 1 7.9647 -4.1190 7.5686 26 6 7.3279 -5.9169 8.6080 27 6 6.7364 -5.3229 6.2128 28 7 4.3937 -2.0152 4.4818 29 7 3.8008 -1.1666 3.7163 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6055 -1.7198 1.2951 38 1 1.7517 -0.1583 2.1369 39 1 3.9995 0.1676 1.1419 40 1 3.8533 -1.3939 0.3001 41 1 5.2147 -3.1639 1.5621 42 1 5.7315 -2.3729 6.5165 43 1 4.2872 -3.4207 6.5353 44 1 7.0187 -2.5322 8.9619 45 1 6.8578 -0.1867 11.3281 46 1 8.1651 -6.5274 8.2696 47 1 6.4307 -6.5327 8.6696 48 1 7.5534 -5.5039 9.5913 49 1 7.6423 -5.5363 5.6455 50 1 6.1233 -6.2198 6.3014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939132205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:38 Heat of formation + Delta-G solvation = 41.038933 kcal Electronic energy + Delta-G solvation = -28929.323862 eV Core-core repulsion = 24992.775555 eV Total energy + Delta-G solvation = -3936.548307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.24679 -40.91161 -38.88102 -38.14760 -35.86294 -35.26290 -33.88552 -32.52609 -31.99707 -30.41934 -29.12558 -28.04786 -27.58649 -25.89446 -25.57742 -24.37146 -22.89382 -22.61370 -21.36176 -21.02180 -20.52677 -19.08706 -18.63175 -17.49930 -17.41349 -17.14740 -16.72273 -16.40282 -15.91706 -15.71012 -15.52454 -15.32755 -15.00626 -14.76641 -14.63519 -14.48806 -14.09262 -14.02483 -13.68909 -13.51543 -13.32536 -13.14870 -13.00440 -12.82363 -12.79953 -12.78999 -12.61081 -12.24656 -12.16458 -12.06496 -12.02571 -11.95651 -11.71502 -11.66292 -11.55310 -11.45230 -11.23563 -11.15982 -10.88161 -10.36840 -9.63781 -9.02711 -7.91985 -5.21070 0.14817 0.62104 1.11968 1.49015 1.52182 1.57473 1.94080 2.19445 2.58530 3.11345 3.29848 3.39326 3.56826 3.73016 3.80028 3.85347 3.90784 3.95957 3.97578 4.00641 4.24377 4.26283 4.33705 4.39937 4.43035 4.48167 4.57804 4.68404 4.71863 4.73149 4.80136 4.88986 4.93941 4.96888 5.01679 5.02805 5.06259 5.15780 5.21726 5.27626 5.28369 5.37136 5.39402 5.46398 5.51149 5.52445 5.57215 6.28472 6.41382 6.82917 7.08953 7.36099 8.07870 8.32287 9.30957 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.002888 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.470756 B = 9691.988859 C =12056.272408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.156 4.156 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.347 5.347 7 C 0.114 3.886 8 C -0.129 4.129 9 C 0.613 3.387 10 O -0.568 6.568 11 N -0.602 5.602 12 C 0.105 3.895 13 C 0.169 3.831 14 H 0.071 0.929 15 N -0.719 5.719 16 C -0.239 4.239 17 H 0.077 0.923 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.282 1.282 24 C -0.105 4.105 25 H 0.070 0.930 26 C -0.125 4.125 27 C 0.118 3.882 28 N -0.226 5.226 29 N -0.095 5.095 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.146 0.854 41 H 0.244 0.756 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.375 0.625 45 H 0.250 0.750 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -3.576 -25.870 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.213 4.213 4 C -0.164 4.164 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.045 4.045 8 C -0.269 4.269 9 C 0.401 3.599 10 O -0.449 6.449 11 N -0.333 5.333 12 C -0.021 4.021 13 C 0.058 3.942 14 H 0.089 0.911 15 N -0.358 5.358 16 C -0.370 4.370 17 H 0.094 0.906 18 C -0.263 4.263 19 N -0.618 5.618 20 Si 0.798 3.202 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.208 1.208 24 C -0.125 4.125 25 H 0.089 0.911 26 C -0.183 4.183 27 C -0.003 4.003 28 N -0.099 5.099 29 N -0.075 5.075 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.164 0.836 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.207 0.793 45 H 0.059 0.941 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.103 0.897 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.673 -2.893 -25.337 26.631 hybrid contribution 0.064 0.514 0.396 0.652 sum -7.609 -2.379 -24.941 26.184 Atomic orbital electron populations 1.21851 0.94942 1.01970 1.02025 1.21024 0.96050 0.96321 0.96942 1.21977 1.01569 0.95704 1.02061 1.21923 0.92653 1.01855 0.99929 1.22684 0.96283 0.99647 0.82281 1.50915 1.33638 1.19674 1.08922 1.23854 0.92327 0.88827 0.99455 1.21527 1.10964 1.02442 0.92011 1.16608 0.79546 0.82809 0.80942 1.90736 1.50677 1.47418 1.56021 1.48324 1.50311 1.30026 1.04640 1.22871 0.97182 0.94040 0.87982 1.21505 0.96021 0.89313 0.87364 0.91061 1.42426 1.10777 1.41244 1.41317 1.19570 0.92271 1.13508 1.11676 0.90550 1.25495 0.98542 1.00167 1.02145 1.69808 1.20481 1.30582 1.40966 0.85285 0.78559 0.77680 0.78695 1.20098 1.22318 1.20844 1.22565 0.97659 0.97990 0.94250 0.91133 1.21548 1.02587 0.96429 0.97706 1.22395 0.96307 0.89623 0.92019 1.74902 1.05948 1.01525 1.27525 1.81969 1.21766 1.19485 0.84322 0.93585 0.91472 0.92560 0.88691 0.91608 0.93627 0.91684 0.91409 0.92340 0.87175 0.83610 0.73981 0.93222 0.92613 0.79286 0.94098 0.90471 0.91566 0.93514 0.89747 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 71.98 0.66 -0.71 16 2 C -0.08 -0.64 2.92 -10.80 -0.03 -0.67 16 3 C -0.16 -1.25 8.95 71.98 0.64 -0.61 16 4 C -0.13 -1.46 4.89 30.59 0.15 -1.31 16 5 C 0.11 1.12 6.30 86.38 0.54 1.66 16 6 N -0.35 -7.16 3.69 -347.10 -1.28 -8.44 16 7 C 0.11 2.41 11.27 83.85 0.95 3.36 16 8 C -0.13 -4.05 6.85 40.81 0.28 -3.77 16 9 C 0.61 20.98 7.85 86.69 0.68 21.66 16 10 O -0.57 -20.07 17.12 -4.01 -0.07 -20.14 16 11 N -0.60 -20.89 3.33 -815.60 -2.71 -23.60 16 12 C 0.11 4.16 5.27 86.73 0.46 4.62 16 13 C 0.17 6.71 3.08 46.18 0.14 6.85 16 14 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 15 N -0.72 -36.18 5.15 -317.33 -1.63 -37.81 16 16 C -0.24 -13.23 9.96 84.03 0.84 -12.39 16 17 H 0.08 4.08 7.83 -2.90 -0.02 4.05 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.97 -59.65 13.06 21.65 0.28 -59.36 16 20 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 C -0.10 -3.38 3.27 -9.41 -0.03 -3.41 16 25 H 0.07 2.47 8.01 -2.39 -0.02 2.45 16 26 C -0.13 -3.42 9.29 71.98 0.67 -2.75 16 27 C 0.12 3.49 6.38 86.85 0.55 4.04 16 28 N -0.23 -8.15 9.77 -50.00 -0.49 -8.64 16 29 N -0.10 -2.99 13.65 37.02 0.51 -2.49 16 30 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.04 0.50 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.41 6.57 -2.38 -0.02 0.40 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.98 6.57 -2.39 -0.02 0.96 16 40 H 0.15 0.30 8.08 -2.39 -0.02 0.29 16 41 H 0.24 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.05 2.27 7.51 -2.38 -0.02 2.25 16 43 H 0.06 2.27 7.72 -2.39 -0.02 2.25 16 44 H 0.37 20.39 7.76 -92.70 -0.72 19.67 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 48 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 50 H 0.09 2.26 8.03 -2.39 -0.02 2.24 16 Total: -1.00 -74.85 407.57 3.80 -71.04 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.21 Total: 27.71 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.97 Total: 12.91 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -5.33 Total: -140.35 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -74.85 3.80 -71.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939132205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.080 kcal (2) G-P(sol) polarization free energy of solvation -74.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds