Wall clock time and date at job start Wed Apr 1 2020 01:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.64125 * 2 1 4 4 C 1.54319 * 110.71930 * 236.66233 * 2 1 3 5 5 N 1.47028 * 107.27238 * 219.44302 * 4 2 1 6 6 C 1.34775 * 125.64663 * 178.95925 * 5 4 2 7 7 O 1.21601 * 120.00339 * 354.17238 * 6 5 4 8 8 C 1.47433 * 119.99890 * 174.16686 * 6 5 4 9 9 C 1.41290 * 126.41371 * 352.83250 * 8 6 5 10 10 N 1.30441 * 108.02325 * 179.87824 * 9 8 6 11 11 N 1.39930 * 108.89827 * 0.38739 * 10 9 8 12 12 C 1.46494 * 125.75713 * 179.73253 * 11 10 9 13 13 C 1.53001 * 109.47372 * 305.02075 * 12 11 10 14 14 N 1.46896 * 109.47572 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99794 * 66.04854 * 14 13 12 16 16 C 1.46905 * 111.00056 * 189.99856 * 14 13 12 17 17 C 1.34263 * 108.48958 * 359.74860 * 11 10 9 18 18 C 1.47422 * 108.70177 * 358.93867 * 5 4 2 19 19 C 1.54911 * 104.83267 * 24.12949 * 18 5 4 20 20 H 1.09010 * 111.03691 * 81.07242 * 19 18 5 21 21 N 1.46497 * 111.00631 * 204.91347 * 19 18 5 22 22 C 1.36936 * 119.99811 * 267.19832 * 21 19 18 23 23 H 1.07996 * 120.00224 * 359.97438 * 22 21 19 24 24 C 1.38812 * 119.99750 * 179.97438 * 22 21 19 25 25 N 1.31628 * 119.99867 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00262 * 180.27485 * 24 22 21 27 27 H 1.48496 * 109.47275 * 179.72906 * 26 24 22 28 28 H 1.48503 * 109.47049 * 299.72669 * 26 24 22 29 29 H 1.48497 * 109.46977 * 59.72388 * 26 24 22 30 30 H 1.09008 * 109.47012 * 296.85572 * 1 2 3 31 31 H 1.08990 * 109.47437 * 56.85799 * 1 2 3 32 32 H 1.09005 * 109.47422 * 176.86277 * 1 2 3 33 33 H 1.09000 * 109.88742 * 338.86075 * 4 2 1 34 34 H 1.09000 * 109.88794 * 100.02533 * 4 2 1 35 35 H 1.08004 * 125.98600 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.47313 * 65.02241 * 12 11 10 37 37 H 1.09002 * 109.47326 * 185.02420 * 12 11 10 38 38 H 1.08998 * 109.47037 * 300.00335 * 13 12 11 39 39 H 1.09003 * 109.46902 * 59.99446 * 13 12 11 40 40 H 1.08998 * 109.47237 * 59.99996 * 15 14 13 41 41 H 1.08999 * 109.47267 * 180.02562 * 15 14 13 42 42 H 1.09006 * 109.47251 * 299.99801 * 15 14 13 43 43 H 1.09000 * 109.46404 * 60.00316 * 16 14 13 44 44 H 1.09000 * 109.47111 * 180.02562 * 16 14 13 45 45 H 1.08997 * 109.47255 * 300.00097 * 16 14 13 46 46 H 1.08001 * 126.28934 * 179.97438 * 17 11 10 47 47 H 1.08999 * 110.36988 * 265.28788 * 18 5 4 48 48 H 1.09004 * 110.36438 * 142.96492 * 18 5 4 49 49 H 0.96998 * 119.99575 * 87.19337 * 21 19 18 50 50 H 0.96994 * 119.99430 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7932 -1.2059 5 7 3.2445 -1.5520 -0.7363 6 6 3.9920 -2.3864 -1.4856 7 8 3.6576 -2.6441 -2.6260 8 6 5.2153 -2.9866 -0.9227 9 6 5.8049 -2.6765 0.3233 10 7 6.8690 -3.4181 0.4620 11 7 7.0140 -4.2199 -0.6756 12 6 8.0887 -5.1877 -0.9094 13 6 9.4430 -4.4899 -0.7688 14 7 10.5206 -5.4604 -1.0027 15 6 10.5126 -5.9306 -2.3944 16 6 11.8276 -4.8918 -0.6467 17 6 6.0024 -3.9525 -1.5168 18 6 3.4633 -1.2486 0.6896 19 6 2.0790 -0.7933 1.2152 20 1 1.4447 -1.6507 1.4407 21 7 2.2214 0.0737 2.3874 22 6 2.1868 -0.4651 3.6458 23 1 2.0540 -1.5292 3.7741 24 6 2.3223 0.3564 4.7565 25 7 2.4837 1.6533 4.6000 26 14 2.2828 -0.3795 6.4729 27 1 2.4538 0.6999 7.4783 28 1 0.9795 -1.0571 6.6911 29 1 3.3834 -1.3663 6.6139 30 1 -0.3633 0.4643 0.9169 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3634 -1.0262 -0.0562 33 1 1.3129 -1.4785 -1.5750 34 1 2.3740 -0.1059 -1.9976 35 1 5.4375 -1.9539 1.0370 36 1 8.0175 -5.9933 -0.1787 37 1 7.9947 -5.5993 -1.9143 38 1 9.5142 -3.6842 -1.4995 39 1 9.5370 -4.0782 0.2361 40 1 10.6539 -5.0831 -3.0651 41 1 11.3200 -6.6482 -2.5401 42 1 9.5577 -6.4098 -2.6106 43 1 11.8285 -4.6159 0.4078 44 1 12.6074 -5.6310 -0.8299 45 1 12.0165 -4.0068 -1.2541 46 1 5.8355 -4.4088 -2.4813 47 1 4.1932 -0.4465 0.7992 48 1 3.7960 -2.1405 1.2206 49 1 2.3404 1.0294 2.2720 50 1 2.5787 2.2273 5.3761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939294103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:23 Heat of formation + Delta-G solvation = 52.881839 kcal Electronic energy + Delta-G solvation = -28913.931908 eV Core-core repulsion = 24977.897148 eV Total energy + Delta-G solvation = -3936.034760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.50266 -40.77027 -38.82264 -38.60717 -35.83375 -34.80976 -33.76724 -32.49837 -31.47201 -30.17912 -29.16959 -28.54813 -27.46697 -25.91670 -25.55957 -23.94599 -22.71763 -22.42438 -21.55019 -21.20928 -20.45911 -19.10129 -18.45467 -17.43498 -17.33165 -16.89257 -16.72752 -16.28581 -16.17302 -15.98341 -15.50744 -15.38116 -15.28145 -14.90183 -14.55753 -14.46948 -14.39565 -14.18900 -13.93516 -13.73023 -13.40557 -13.14123 -13.03951 -12.97181 -12.82604 -12.79513 -12.71160 -12.59212 -12.41196 -12.21831 -12.06803 -11.97475 -11.83288 -11.67281 -11.37768 -10.98509 -10.84630 -10.63546 -9.89017 -9.52946 -9.48114 -8.99357 -7.91262 -5.20185 0.48638 1.09304 1.28223 1.52236 1.53346 1.59043 2.05290 2.40045 2.59732 2.88684 3.33616 3.40192 3.55695 3.77131 3.82877 3.84701 3.88042 3.99353 4.03600 4.13813 4.22303 4.25764 4.29545 4.39445 4.44264 4.49076 4.55509 4.59917 4.60871 4.64458 4.75579 4.76311 4.79576 4.89508 4.95417 4.96804 5.01407 5.13827 5.15347 5.24121 5.34643 5.43931 5.50138 5.59043 5.76558 5.88071 5.96748 6.29662 6.46700 6.56063 7.19017 7.37992 8.09243 8.34033 9.31170 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.002746 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.851407 B =10193.852998 C =12404.034623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.080 0.920 4 C 0.122 3.878 5 N -0.610 5.610 6 C 0.607 3.393 7 O -0.589 6.589 8 C -0.312 4.312 9 C 0.072 3.928 10 N -0.318 5.318 11 N -0.355 5.355 12 C 0.131 3.869 13 C 0.051 3.949 14 N -0.552 5.552 15 C 0.013 3.987 16 C 0.024 3.976 17 C 0.141 3.859 18 C 0.081 3.919 19 C 0.171 3.829 20 H 0.065 0.935 21 N -0.717 5.717 22 C -0.239 4.239 23 H 0.077 0.923 24 C -0.067 4.067 25 N -0.965 5.965 26 Si 0.965 3.035 27 H -0.299 1.299 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.196 0.804 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.028 0.972 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.026 0.974 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.377 0.623 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -14.096 -16.158 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.099 0.901 4 C -0.001 4.001 5 N -0.341 5.341 6 C 0.398 3.602 7 O -0.472 6.472 8 C -0.327 4.327 9 C -0.115 4.115 10 N -0.137 5.137 11 N -0.133 5.133 12 C 0.011 3.989 13 C -0.078 4.078 14 N -0.277 5.277 15 C -0.135 4.135 16 C -0.124 4.124 17 C -0.011 4.011 18 C -0.045 4.045 19 C 0.060 3.940 20 H 0.083 0.917 21 N -0.356 5.356 22 C -0.371 4.371 23 H 0.095 0.905 24 C -0.260 4.260 25 N -0.615 5.615 26 Si 0.794 3.206 27 H -0.225 1.225 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.213 0.787 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.233 0.767 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.210 0.790 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.535 -15.209 -15.569 25.630 hybrid contribution -0.420 1.419 0.304 1.511 sum 13.115 -13.790 -15.265 24.396 Atomic orbital electron populations 1.21613 0.92724 1.02228 1.02027 1.22430 0.97469 0.99192 0.93346 0.90138 1.21994 0.87253 0.94290 0.96538 1.48212 1.30049 1.44102 1.11775 1.17105 0.81897 0.77313 0.83844 1.90699 1.73325 1.63679 1.19454 1.20190 1.02858 1.09956 0.99659 1.24818 0.92186 0.98030 0.96506 1.77184 1.20895 1.08848 1.06822 1.48761 1.20746 1.31151 1.12665 1.22052 0.82757 0.88588 1.05467 1.22191 0.90338 0.93294 1.01989 1.61939 1.03941 1.37622 1.24199 1.22619 1.04234 1.00088 0.86539 1.22431 0.89953 0.98830 1.01207 1.23318 0.86718 0.94432 0.96670 1.23441 1.01162 1.00352 0.79561 1.21528 0.92699 0.93417 0.86386 0.91748 1.42356 1.86370 1.06230 1.00631 1.19540 1.40432 0.92859 0.84281 0.90504 1.25439 1.03498 0.95826 1.01195 1.69791 1.58187 1.03769 1.29732 0.85346 0.78074 0.76821 0.80322 1.22541 1.20580 1.20543 0.93375 0.90819 0.92167 0.90858 0.91165 0.78719 0.87930 0.85127 0.94735 0.90906 0.95360 0.89920 0.89855 0.91496 0.89581 0.95523 0.76659 0.91690 0.90520 0.78982 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.16 71.98 0.66 -2.82 16 2 C -0.10 -3.16 3.20 -9.61 -0.03 -3.19 16 3 H 0.08 2.52 8.00 -2.39 -0.02 2.50 16 4 C 0.12 3.51 6.47 86.73 0.56 4.07 16 5 N -0.61 -19.35 3.33 -815.65 -2.71 -22.06 16 6 C 0.61 19.93 7.83 86.67 0.68 20.61 16 7 O -0.59 -21.64 17.24 -4.03 -0.07 -21.71 16 8 C -0.31 -8.98 6.04 -20.15 -0.12 -9.10 16 9 C 0.07 2.12 10.27 85.65 0.88 3.00 16 10 N -0.32 -9.04 12.33 -56.28 -0.69 -9.73 16 11 N -0.35 -7.65 3.65 -346.31 -1.26 -8.91 16 12 C 0.13 1.83 6.41 86.38 0.55 2.38 16 13 C 0.05 0.79 5.13 86.30 0.44 1.23 16 14 N -0.55 -7.14 5.02 -948.84 -4.76 -11.90 16 15 C 0.01 0.11 9.32 127.69 1.19 1.30 16 16 C 0.02 0.28 9.57 127.69 1.22 1.50 16 17 C 0.14 3.13 11.26 84.27 0.95 4.08 16 18 C 0.08 2.69 4.79 86.86 0.42 3.11 16 19 C 0.17 6.21 3.16 46.39 0.15 6.36 16 20 H 0.06 2.42 8.00 -2.38 -0.02 2.40 16 21 N -0.72 -33.11 5.24 -316.37 -1.66 -34.77 16 22 C -0.24 -12.41 9.96 84.03 0.84 -11.57 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 25 N -0.96 -56.53 13.06 21.65 0.28 -56.25 16 26 Si 0.96 44.68 29.55 68.60 2.03 46.71 16 27 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 30 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.53 8.06 -2.38 -0.02 1.51 16 33 H 0.07 2.03 7.76 -2.39 -0.02 2.02 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.20 5.92 4.88 -2.91 -0.01 5.90 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.13 0.97 6.47 -2.39 -0.02 0.95 16 38 H 0.03 0.58 8.12 -2.39 -0.02 0.56 16 39 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 40 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 42 H 0.08 0.48 6.47 -2.38 -0.02 0.46 16 43 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 44 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 45 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.22 3.29 8.06 -2.91 -0.02 3.27 16 47 H 0.06 2.27 7.71 -2.39 -0.02 2.25 16 48 H 0.08 2.56 5.96 -2.38 -0.01 2.54 16 49 H 0.38 18.84 7.76 -92.71 -0.72 18.12 16 50 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -67.76 403.49 0.22 -67.55 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.22 Total: 33.31 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 8.85 Total: 17.76 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -10.81 Total: -143.62 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.07 Total: -21.71 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.76 0.22 -67.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939294103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.427 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds