Wall clock time and date at job start Wed Apr 1 2020 00:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49840 * 2 1 4 4 C 1.53191 * 109.52402 * 120.08373 * 2 1 3 5 5 N 1.46928 * 108.77684 * 174.60286 * 4 2 1 6 6 C 1.36937 * 120.63302 * 126.36816 * 5 4 2 7 7 H 1.07998 * 120.00198 * 207.68841 * 6 5 4 8 8 C 1.38813 * 119.99556 * 27.68993 * 6 5 4 9 9 N 1.31614 * 120.00321 * 17.36077 * 8 6 5 10 10 Si 1.86801 * 119.99738 * 197.36031 * 8 6 5 11 11 H 1.48500 * 109.46932 * 89.99778 * 10 8 6 12 12 H 1.48491 * 109.47362 * 210.00122 * 10 8 6 13 13 H 1.48500 * 109.47271 * 330.00262 * 10 8 6 14 14 C 1.46931 * 118.73556 * 306.39284 * 5 4 2 15 15 C 1.53184 * 108.77738 * 53.60740 * 14 5 4 16 16 C 1.53036 * 109.49791 * 239.94015 * 2 1 3 17 17 H 1.09005 * 109.45983 * 298.65455 * 16 2 1 18 18 N 1.46495 * 109.46148 * 58.62796 * 16 2 1 19 19 C 1.34785 * 120.00174 * 205.00194 * 18 16 2 20 20 O 1.21591 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.47520 * 120.00243 * 180.02562 * 19 18 16 22 22 C 1.36595 * 125.77323 * 180.23421 * 21 19 18 23 23 N 1.34816 * 106.83971 * 180.13678 * 22 21 19 24 24 C 1.46496 * 126.59307 * 179.90905 * 23 22 21 25 25 C 1.52994 * 109.47204 * 74.71300 * 24 23 22 26 26 C 1.53002 * 109.47051 * 314.71212 * 24 23 22 27 27 C 1.53000 * 109.47160 * 194.71284 * 24 23 22 28 28 N 1.40217 * 106.81098 * 359.64866 * 23 22 21 29 29 N 1.28759 * 108.36699 * 0.22265 * 28 23 22 30 30 H 1.08997 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46954 * 300.06624 * 1 2 3 32 32 H 1.09003 * 109.47041 * 60.06225 * 1 2 3 33 33 H 1.08999 * 109.58612 * 294.39078 * 4 2 1 34 34 H 1.09000 * 109.58487 * 54.67295 * 4 2 1 35 35 H 0.97004 * 120.00118 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.58033 * 173.39675 * 14 5 4 37 37 H 1.08998 * 109.58492 * 293.81940 * 14 5 4 38 38 H 1.09004 * 109.50154 * 185.41425 * 15 14 5 39 39 H 1.09004 * 109.49955 * 65.31804 * 15 14 5 40 40 H 0.97003 * 120.00454 * 25.00285 * 18 16 2 41 41 H 1.07997 * 126.58072 * 0.02562 * 22 21 19 42 42 H 1.08994 * 109.47402 * 300.00253 * 25 24 23 43 43 H 1.09004 * 109.47339 * 59.99944 * 25 24 23 44 44 H 1.09002 * 109.47597 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.46642 * 179.97438 * 26 24 23 46 46 H 1.08993 * 109.47081 * 299.99956 * 26 24 23 47 47 H 1.08998 * 109.47210 * 60.00327 * 26 24 23 48 48 H 1.09002 * 109.47294 * 300.00220 * 27 24 23 49 49 H 1.09003 * 109.47338 * 59.99862 * 27 24 23 50 50 H 1.08999 * 109.47526 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2493 5 7 3.5053 -0.8284 1.1690 6 6 4.2944 -0.3775 2.1933 7 1 5.2994 -0.0375 1.9914 8 6 3.8025 -0.3575 3.4912 9 7 2.7396 -1.0683 3.8031 10 14 4.6492 0.6781 4.7950 11 1 4.0518 2.0376 4.8122 12 1 4.4711 0.0422 6.1250 13 1 6.0978 0.7781 4.4841 14 6 4.1059 -1.4255 -0.0317 15 6 3.5708 -0.6939 -1.2666 16 6 2.0408 -0.7226 -1.2486 17 1 1.6974 -1.7571 -1.2355 18 7 1.5259 -0.0526 -2.4452 19 6 1.3978 -0.7378 -3.5988 20 8 1.7101 -1.9119 -3.6464 21 6 0.8798 -0.0629 -4.8040 22 6 0.6983 -0.6421 -6.0277 23 7 0.2144 0.3148 -6.8448 24 6 -0.1329 0.1614 -8.2597 25 6 -1.4487 -0.6097 -8.3812 26 6 0.9777 -0.6089 -8.9768 27 6 -0.2902 1.5425 -8.8989 28 7 0.1016 1.4835 -6.0784 29 7 0.5020 1.2246 -4.8823 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.7644 -0.1581 2.1388 34 1 1.6044 -1.7208 1.2991 35 1 2.3960 -1.0546 4.7102 36 1 5.1902 -1.3229 0.0126 37 1 3.8386 -2.4807 -0.0877 38 1 3.9334 -1.1883 -2.1679 39 1 3.9155 0.3401 -1.2547 40 1 1.2771 0.8842 -2.4075 41 1 0.9047 -1.6690 -6.2907 42 1 -1.3367 -1.5936 -7.9259 43 1 -2.2400 -0.0609 -7.8704 44 1 -1.7074 -0.7234 -9.4340 45 1 0.7191 -0.7234 -10.0295 46 1 1.9151 -0.0596 -8.8902 47 1 1.0898 -1.5929 -8.5215 48 1 -1.0814 2.0914 -8.3881 49 1 0.6473 2.0919 -8.8124 50 1 -0.5490 1.4285 -9.9516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942112782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:47 Heat of formation + Delta-G solvation = 68.635879 kcal Electronic energy + Delta-G solvation = -29500.107068 eV Core-core repulsion = 25564.755455 eV Total energy + Delta-G solvation = -3935.351613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.43812 -39.55582 -37.85310 -37.39918 -34.46389 -32.50827 -32.07366 -31.78350 -30.93640 -29.24208 -28.13022 -28.04677 -25.88439 -25.28056 -23.97385 -23.40258 -21.82887 -20.88827 -20.79478 -19.87362 -19.15998 -17.73282 -16.81917 -16.30054 -16.29027 -15.89923 -14.98128 -14.86798 -14.78672 -14.66409 -14.23089 -14.01721 -13.73368 -13.51682 -13.22813 -13.09298 -13.00396 -12.87375 -12.81542 -12.50283 -12.45358 -12.38573 -12.02049 -11.96482 -11.68468 -11.40955 -11.34287 -11.23698 -11.02816 -10.71585 -10.59239 -10.55354 -10.29469 -10.14004 -9.95585 -9.94778 -9.65522 -9.44618 -9.39675 -8.61590 -8.40336 -6.64632 -5.75358 -3.17033 0.98712 1.68366 1.72031 3.34754 3.41558 3.42206 3.48097 3.49235 3.77855 4.02473 4.08419 4.14426 4.53146 4.58511 4.72425 4.81172 4.87884 4.98572 4.99043 5.03727 5.14217 5.18295 5.29701 5.36064 5.38141 5.49417 5.52198 5.57243 5.64205 5.75961 5.78192 5.95405 6.17455 6.19588 6.21488 6.32462 6.42891 6.55605 6.57754 6.66485 6.76437 6.84813 7.00783 7.04878 7.39450 7.63282 7.71682 7.83723 7.92844 8.40417 8.48711 9.24903 9.88272 10.45195 11.33353 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.002211 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.636387 B =12658.868725 C =12807.676058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 H 0.068 0.932 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.148 3.852 15 C -0.141 4.141 16 C 0.157 3.843 17 H 0.083 0.917 18 N -0.704 5.704 19 C 0.599 3.401 20 O -0.543 6.543 21 C -0.096 4.096 22 C 0.090 3.910 23 N -0.353 5.353 24 C 0.169 3.831 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.149 4.149 28 N -0.066 5.066 29 N -0.207 5.207 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.021 0.979 35 H 0.254 0.746 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.404 0.596 41 H 0.200 0.800 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 2.040 -27.465 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 H 0.087 0.913 4 C 0.054 3.946 5 N -0.316 5.316 6 C -0.380 4.380 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.547 5.547 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.021 3.979 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.102 0.898 18 N -0.352 5.352 19 C 0.383 3.617 20 O -0.420 6.420 21 C -0.236 4.236 22 C -0.067 4.067 23 N -0.139 5.139 24 C 0.087 3.913 25 C -0.220 4.220 26 C -0.221 4.221 27 C -0.206 4.206 28 N -0.045 5.045 29 N -0.080 5.080 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.238 0.762 41 H 0.217 0.783 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.786 2.649 -27.334 28.833 hybrid contribution 0.489 -0.085 0.548 0.739 sum -8.297 2.565 -26.785 28.158 Atomic orbital electron populations 1.21732 0.95865 1.01415 1.00754 1.22166 0.94768 1.00718 0.96644 0.91323 1.20807 0.82999 0.97099 0.93655 1.44108 1.01760 1.69381 1.16306 1.19200 0.97771 1.35229 0.85818 0.91621 1.25035 0.98600 0.99101 0.96968 1.70029 1.25727 1.40166 1.18784 0.86291 0.79172 0.80186 0.81140 1.21467 1.21821 1.20469 1.20876 0.96648 0.94285 0.86095 1.22405 0.94732 1.01456 0.99493 1.21119 0.93877 0.97181 0.82413 0.89844 1.46117 1.64455 1.14818 1.09842 1.16784 0.77735 0.85584 0.81611 1.90799 1.51387 1.15301 1.84513 1.21637 1.13943 0.91579 0.96429 1.23236 0.96411 0.97011 0.89999 1.50811 1.43684 1.08628 1.10803 1.21080 0.96549 0.98902 0.74764 1.22291 0.95192 1.00542 1.03932 1.22303 0.97741 1.00620 1.01474 1.21992 1.04176 0.93585 1.00866 1.81942 1.21793 1.04453 0.96352 1.74655 1.08221 1.13535 1.11603 0.93058 0.92602 0.93701 0.88972 0.96095 0.93637 0.92558 0.96137 0.92619 0.92221 0.76156 0.78326 0.91310 0.91202 0.89648 0.89407 0.91097 0.91073 0.90617 0.91202 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.03 37.16 0.34 -1.97 16 2 C -0.12 -2.31 2.46 -90.50 -0.22 -2.54 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.18 4.29 4.60 -3.71 -0.02 4.28 16 5 N -0.59 -15.00 3.00 -172.32 -0.52 -15.51 16 6 C -0.25 -6.91 9.59 -15.06 -0.14 -7.05 16 7 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 8 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 9 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 10 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 15 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 16 C 0.16 2.85 1.88 -67.89 -0.13 2.72 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.70 -11.10 4.36 -54.81 -0.24 -11.34 16 19 C 0.60 9.53 7.78 -12.47 -0.10 9.44 16 20 O -0.54 -9.94 16.53 5.29 0.09 -9.86 16 21 C -0.10 -1.31 6.99 -83.55 -0.58 -1.89 16 22 C 0.09 0.94 10.43 -16.83 -0.18 0.76 16 23 N -0.35 -3.29 3.44 -48.36 -0.17 -3.45 16 24 C 0.17 0.94 1.25 -131.82 -0.16 0.78 16 25 C -0.16 -0.69 8.73 37.15 0.32 -0.36 16 26 C -0.16 -0.62 8.31 37.16 0.31 -0.31 16 27 C -0.15 -0.74 8.11 37.16 0.30 -0.44 16 28 N -0.07 -0.81 12.91 60.35 0.78 -0.04 16 29 N -0.21 -2.88 12.04 32.85 0.40 -2.48 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.66 7.36 -51.93 -0.38 0.28 16 33 H 0.09 2.44 6.03 -51.93 -0.31 2.12 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 5.90 7.99 -40.82 -0.33 5.57 16 41 H 0.20 1.54 7.64 -52.49 -0.40 1.14 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.25 7.45 -51.93 -0.39 -0.13 16 48 H 0.07 0.46 8.06 -51.93 -0.42 0.04 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -32.63 400.81 -7.05 -39.68 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.50 Total: 2.00 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.52 Total: 3.77 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.87 Total: -58.42 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.63 -7.05 -39.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942112782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.321 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds