Wall clock time and date at job start Wed Apr 1 2020 00:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49840 * 2 1 4 4 C 1.53191 * 109.52402 * 120.08373 * 2 1 3 5 5 N 1.46928 * 108.77684 * 174.60286 * 4 2 1 6 6 C 1.36937 * 120.63302 * 126.36816 * 5 4 2 7 7 H 1.07998 * 120.00198 * 207.68841 * 6 5 4 8 8 C 1.38813 * 119.99556 * 27.68993 * 6 5 4 9 9 N 1.31614 * 120.00321 * 17.36077 * 8 6 5 10 10 Si 1.86801 * 119.99738 * 197.36031 * 8 6 5 11 11 H 1.48500 * 109.46932 * 89.99778 * 10 8 6 12 12 H 1.48491 * 109.47362 * 210.00122 * 10 8 6 13 13 H 1.48500 * 109.47271 * 330.00262 * 10 8 6 14 14 C 1.46931 * 118.73556 * 306.39284 * 5 4 2 15 15 C 1.53184 * 108.77738 * 53.60740 * 14 5 4 16 16 C 1.53036 * 109.49791 * 239.94015 * 2 1 3 17 17 H 1.09005 * 109.45983 * 298.65455 * 16 2 1 18 18 N 1.46495 * 109.46148 * 58.62796 * 16 2 1 19 19 C 1.34785 * 120.00174 * 205.00194 * 18 16 2 20 20 O 1.21591 * 119.99787 * 359.97438 * 19 18 16 21 21 C 1.47520 * 120.00243 * 180.02562 * 19 18 16 22 22 C 1.36595 * 125.77323 * 180.23421 * 21 19 18 23 23 N 1.34816 * 106.83971 * 180.13678 * 22 21 19 24 24 C 1.46496 * 126.59307 * 179.90905 * 23 22 21 25 25 C 1.52994 * 109.47204 * 74.71300 * 24 23 22 26 26 C 1.53002 * 109.47051 * 314.71212 * 24 23 22 27 27 C 1.53000 * 109.47160 * 194.71284 * 24 23 22 28 28 N 1.40217 * 106.81098 * 359.64866 * 23 22 21 29 29 N 1.28759 * 108.36699 * 0.22265 * 28 23 22 30 30 H 1.08997 * 109.47202 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46954 * 300.06624 * 1 2 3 32 32 H 1.09003 * 109.47041 * 60.06225 * 1 2 3 33 33 H 1.08999 * 109.58612 * 294.39078 * 4 2 1 34 34 H 1.09000 * 109.58487 * 54.67295 * 4 2 1 35 35 H 0.97004 * 120.00118 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.58033 * 173.39675 * 14 5 4 37 37 H 1.08998 * 109.58492 * 293.81940 * 14 5 4 38 38 H 1.09004 * 109.50154 * 185.41425 * 15 14 5 39 39 H 1.09004 * 109.49955 * 65.31804 * 15 14 5 40 40 H 0.97003 * 120.00454 * 25.00285 * 18 16 2 41 41 H 1.07997 * 126.58072 * 0.02562 * 22 21 19 42 42 H 1.08994 * 109.47402 * 300.00253 * 25 24 23 43 43 H 1.09004 * 109.47339 * 59.99944 * 25 24 23 44 44 H 1.09002 * 109.47597 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.46642 * 179.97438 * 26 24 23 46 46 H 1.08993 * 109.47081 * 299.99956 * 26 24 23 47 47 H 1.08998 * 109.47210 * 60.00327 * 26 24 23 48 48 H 1.09002 * 109.47294 * 300.00220 * 27 24 23 49 49 H 1.09003 * 109.47338 * 59.99862 * 27 24 23 50 50 H 1.08999 * 109.47526 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 1.2493 5 7 3.5053 -0.8284 1.1690 6 6 4.2944 -0.3775 2.1933 7 1 5.2994 -0.0375 1.9914 8 6 3.8025 -0.3575 3.4912 9 7 2.7396 -1.0683 3.8031 10 14 4.6492 0.6781 4.7950 11 1 4.0518 2.0376 4.8122 12 1 4.4711 0.0422 6.1250 13 1 6.0978 0.7781 4.4841 14 6 4.1059 -1.4255 -0.0317 15 6 3.5708 -0.6939 -1.2666 16 6 2.0408 -0.7226 -1.2486 17 1 1.6974 -1.7571 -1.2355 18 7 1.5259 -0.0526 -2.4452 19 6 1.3978 -0.7378 -3.5988 20 8 1.7101 -1.9119 -3.6464 21 6 0.8798 -0.0629 -4.8040 22 6 0.6983 -0.6421 -6.0277 23 7 0.2144 0.3148 -6.8448 24 6 -0.1329 0.1614 -8.2597 25 6 -1.4487 -0.6097 -8.3812 26 6 0.9777 -0.6089 -8.9768 27 6 -0.2902 1.5425 -8.8989 28 7 0.1016 1.4835 -6.0784 29 7 0.5020 1.2246 -4.8823 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.7644 -0.1581 2.1388 34 1 1.6044 -1.7208 1.2991 35 1 2.3960 -1.0546 4.7102 36 1 5.1902 -1.3229 0.0126 37 1 3.8386 -2.4807 -0.0877 38 1 3.9334 -1.1883 -2.1679 39 1 3.9155 0.3401 -1.2547 40 1 1.2771 0.8842 -2.4075 41 1 0.9047 -1.6690 -6.2907 42 1 -1.3367 -1.5936 -7.9259 43 1 -2.2400 -0.0609 -7.8704 44 1 -1.7074 -0.7234 -9.4340 45 1 0.7191 -0.7234 -10.0295 46 1 1.9151 -0.0596 -8.8902 47 1 1.0898 -1.5929 -8.5215 48 1 -1.0814 2.0914 -8.3881 49 1 0.6473 2.0919 -8.8124 50 1 -0.5490 1.4285 -9.9516 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942112782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:45 Heat of formation + Delta-G solvation = 47.532394 kcal Electronic energy + Delta-G solvation = -29501.022184 eV Core-core repulsion = 25564.755455 eV Total energy + Delta-G solvation = -3936.266729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.31341 -40.92386 -39.12195 -38.27375 -36.15156 -34.02536 -33.50490 -32.98672 -32.05952 -30.89760 -28.47356 -28.41411 -27.55041 -27.00213 -24.95834 -24.61997 -23.32050 -22.49151 -21.77199 -21.16510 -20.53211 -18.93301 -18.37014 -17.32365 -17.29532 -17.11499 -16.71794 -15.91265 -15.70682 -15.66130 -15.51394 -15.23472 -15.05177 -14.87691 -14.63170 -14.52259 -14.20542 -13.63949 -13.53464 -13.38024 -13.30580 -13.19464 -13.16552 -12.92674 -12.86559 -12.77385 -12.56483 -12.45124 -12.42306 -12.34349 -12.01867 -11.96693 -11.83062 -11.74066 -11.57361 -11.30446 -11.27098 -11.07224 -10.54702 -10.39930 -9.95459 -8.70114 -7.86442 -5.31616 0.15548 0.62591 1.03857 1.48697 1.50114 1.58879 2.12461 2.25113 2.52565 3.16821 3.24884 3.28857 3.63664 3.65439 3.72293 3.77551 3.80882 3.93941 4.04432 4.19985 4.21376 4.36156 4.51492 4.57820 4.58525 4.60780 4.67799 4.68899 4.73913 4.76995 4.80003 4.81772 4.86460 4.94219 5.00876 5.08144 5.09796 5.15183 5.19759 5.27193 5.31165 5.34232 5.51756 5.52508 5.55172 5.66833 5.74604 6.39822 6.47070 6.92183 7.15431 7.16099 7.85176 8.38036 9.20426 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.002211 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.636387 B =12658.868725 C =12807.676058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 H 0.069 0.931 4 C 0.189 3.811 5 N -0.611 5.611 6 C -0.262 4.262 7 H 0.067 0.933 8 C -0.050 4.050 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.284 1.284 12 H -0.295 1.295 13 H -0.270 1.270 14 C 0.146 3.854 15 C -0.127 4.127 16 C 0.170 3.830 17 H 0.066 0.934 18 N -0.698 5.698 19 C 0.603 3.397 20 O -0.570 6.570 21 C -0.121 4.121 22 C 0.106 3.894 23 N -0.338 5.338 24 C 0.158 3.842 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.147 4.147 28 N -0.082 5.082 29 N -0.227 5.227 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.062 0.938 34 H -0.003 1.003 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.012 0.988 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.411 0.589 41 H 0.227 0.773 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 2.517 -30.318 31.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.129 4.129 3 H 0.087 0.913 4 C 0.063 3.937 5 N -0.334 5.334 6 C -0.392 4.392 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.580 5.580 10 Si 0.796 3.204 11 H -0.211 1.211 12 H -0.222 1.222 13 H -0.194 1.194 14 C 0.019 3.981 15 C -0.167 4.167 16 C 0.066 3.934 17 H 0.084 0.916 18 N -0.347 5.347 19 C 0.389 3.611 20 O -0.449 6.449 21 C -0.261 4.261 22 C -0.052 4.052 23 N -0.124 5.124 24 C 0.078 3.922 25 C -0.216 4.216 26 C -0.219 4.219 27 C -0.205 4.205 28 N -0.062 5.062 29 N -0.100 5.100 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.081 3.161 -30.244 31.736 hybrid contribution 0.562 -0.293 1.286 1.434 sum -8.520 2.868 -28.958 30.321 Atomic orbital electron populations 1.21666 0.93775 1.01614 1.01947 1.21904 0.96411 0.99840 0.94758 0.91270 1.20594 0.82530 0.95783 0.94810 1.44373 1.02268 1.69878 1.16840 1.19511 0.98136 1.34939 0.86659 0.91518 1.25791 0.99522 1.00270 0.98925 1.70183 1.27227 1.41605 1.18935 0.85263 0.78594 0.78387 0.78174 1.21093 1.22211 1.19427 1.20968 0.96872 0.94048 0.86166 1.22218 0.95177 1.01125 0.98148 1.20747 0.93333 0.96292 0.83062 0.91572 1.45893 1.64522 1.15063 1.09217 1.17007 0.76934 0.85210 0.81984 1.90781 1.52611 1.16452 1.85011 1.21397 1.16091 0.92013 0.96551 1.23601 0.94630 0.97974 0.88974 1.51184 1.41918 1.07418 1.11886 1.21599 0.98087 0.99836 0.72692 1.22316 0.93673 0.99959 1.05696 1.22348 0.96405 1.00251 1.02898 1.22022 1.03035 0.92924 1.02502 1.81869 1.22185 1.05868 0.96261 1.74626 1.08955 1.13879 1.12544 0.93373 0.92441 0.91421 0.91929 0.98542 0.94034 0.92261 0.96966 0.91634 0.91939 0.75244 0.75643 0.91120 0.92651 0.86788 0.86663 0.92151 0.90483 0.92039 0.92427 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.03 71.98 0.65 -3.64 16 2 C -0.11 -4.12 2.46 -10.72 -0.03 -4.15 16 3 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 4 C 0.19 9.26 4.60 86.36 0.40 9.66 16 5 N -0.61 -31.53 3.00 -699.10 -2.09 -33.62 16 6 C -0.26 -14.66 9.59 84.03 0.81 -13.86 16 7 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 8 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 9 N -0.93 -55.71 11.19 21.65 0.24 -55.46 16 10 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.15 6.43 6.52 86.36 0.56 6.99 16 15 C -0.13 -4.72 5.65 30.67 0.17 -4.55 16 16 C 0.17 6.12 1.88 45.02 0.08 6.21 16 17 H 0.07 2.66 7.58 -2.38 -0.02 2.64 16 18 N -0.70 -21.45 4.36 -445.58 -1.94 -23.40 16 19 C 0.60 18.66 7.78 86.69 0.67 19.34 16 20 O -0.57 -20.42 16.53 -4.00 -0.07 -20.48 16 21 C -0.12 -3.13 6.99 40.81 0.29 -2.85 16 22 C 0.11 2.00 10.43 83.85 0.87 2.88 16 23 N -0.34 -5.69 3.44 -306.91 -1.06 -6.74 16 24 C 0.16 1.34 1.25 3.60 0.00 1.35 16 25 C -0.16 -0.87 8.73 71.98 0.63 -0.25 16 26 C -0.16 -0.70 8.31 71.98 0.60 -0.10 16 27 C -0.15 -1.15 8.11 71.98 0.58 -0.56 16 28 N -0.08 -1.96 12.91 37.02 0.48 -1.48 16 29 N -0.23 -6.14 12.04 -49.99 -0.60 -6.74 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.07 1.89 7.36 -2.39 -0.02 1.87 16 33 H 0.06 3.43 6.03 -2.39 -0.01 3.42 16 34 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.41 11.57 7.99 -92.71 -0.74 10.83 16 41 H 0.23 2.85 7.64 -2.91 -0.02 2.83 16 42 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 0.27 7.45 -2.39 -0.02 0.26 16 48 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -72.20 400.81 3.89 -68.31 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.19 Total: 18.16 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.71 Total: 14.08 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -4.97 Total: -127.45 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.07 Total: -20.48 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -72.20 3.89 -68.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942112782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.841 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds