Wall clock time and date at job start Wed Apr 1 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.52436 * 2 1 4 4 C 1.53197 * 109.49972 * 239.91913 * 2 1 3 5 5 N 1.46928 * 108.89211 * 185.34567 * 4 2 1 6 6 C 1.36933 * 120.62359 * 233.67040 * 5 4 2 7 7 H 1.08013 * 119.99605 * 152.76311 * 6 5 4 8 8 C 1.38807 * 120.00574 * 332.75883 * 6 5 4 9 9 N 1.31627 * 120.00090 * 159.74724 * 8 6 5 10 10 Si 1.86800 * 120.00018 * 339.75161 * 8 6 5 11 11 H 1.48503 * 109.47189 * 94.90601 * 10 8 6 12 12 H 1.48506 * 109.47114 * 214.90775 * 10 8 6 13 13 H 1.48502 * 109.46855 * 334.90779 * 10 8 6 14 14 C 1.47201 * 118.55605 * 53.53778 * 5 4 2 15 15 C 1.53190 * 108.85479 * 306.47422 * 14 5 4 16 16 C 1.53039 * 109.31017 * 54.65639 * 15 14 5 17 17 H 1.09001 * 109.45340 * 58.64930 * 16 15 14 18 18 N 1.46506 * 109.46207 * 178.61196 * 16 15 14 19 19 C 1.34775 * 119.99780 * 275.06994 * 18 16 15 20 20 O 1.21557 * 120.00434 * 359.97438 * 19 18 16 21 21 C 1.47874 * 119.99981 * 179.97438 * 19 18 16 22 22 N 1.34554 * 126.04484 * 359.69106 * 21 19 18 23 23 C 1.30873 * 107.26737 * 179.89121 * 22 21 19 24 24 N 1.34584 * 107.62494 * 0.36492 * 23 22 21 25 25 C 1.46496 * 125.75082 * 179.79935 * 24 23 22 26 26 C 1.53003 * 109.46724 * 74.98221 * 25 24 23 27 27 C 1.53000 * 109.47613 * 194.98519 * 25 24 23 28 28 C 1.53005 * 109.46928 * 314.98852 * 25 24 23 29 29 N 1.28853 * 108.50316 * 359.77196 * 24 23 22 30 30 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.08318 * 1 2 3 32 32 H 1.09001 * 109.46699 * 60.08354 * 1 2 3 33 33 H 1.09006 * 109.58378 * 305.20151 * 4 2 1 34 34 H 1.08993 * 109.58633 * 65.48241 * 4 2 1 35 35 H 0.96994 * 119.99979 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.53151 * 186.67664 * 14 5 4 37 37 H 1.08999 * 109.56489 * 66.29650 * 14 5 4 38 38 H 1.08997 * 109.49936 * 294.69912 * 15 14 5 39 39 H 1.09002 * 109.52193 * 174.61764 * 15 14 5 40 40 H 0.96998 * 120.00076 * 95.05517 * 18 16 15 41 41 H 1.07998 * 126.18634 * 180.12283 * 23 22 21 42 42 H 1.08998 * 109.47138 * 60.00779 * 26 25 24 43 43 H 1.09003 * 109.46851 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47492 * 300.00237 * 26 25 24 45 45 H 1.08998 * 109.47051 * 60.00138 * 27 25 24 46 46 H 1.08995 * 109.46984 * 180.02562 * 27 25 24 47 47 H 1.08993 * 109.46696 * 300.00270 * 27 25 24 48 48 H 1.09001 * 109.47355 * 59.99722 * 28 25 24 49 49 H 1.09003 * 109.47179 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47095 * 299.99470 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5049 -0.8291 -1.1730 6 6 4.2913 -0.3779 -2.1991 7 1 5.2996 -0.0452 -2.0006 8 6 3.7930 -0.3481 -3.4943 9 7 4.3550 0.4265 -4.3980 10 14 2.3248 -1.4072 -3.9547 11 1 1.0797 -0.6069 -3.8337 12 1 2.4751 -1.8803 -5.3543 13 1 2.2523 -2.5765 -3.0421 14 6 4.1052 -1.4267 0.0309 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7573 1.2352 18 7 1.5264 -0.0529 2.4453 19 6 1.3984 -0.7382 3.5987 20 8 1.7092 -1.9124 3.6459 21 6 0.8797 -0.0617 4.8070 22 7 0.5065 1.2282 4.8936 23 6 0.1067 1.4353 6.1224 24 7 0.2405 0.2773 6.7951 25 6 -0.0891 0.0644 8.2065 26 6 -1.6086 -0.0102 8.3696 27 6 0.5401 -1.2455 8.6853 28 6 0.4566 1.2266 9.0387 29 7 0.7070 -0.6126 5.9884 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6053 -1.7217 -1.2980 34 1 1.7616 -0.1593 -2.1390 35 1 4.0065 0.4475 -5.3030 36 1 5.1896 -1.3246 -0.0136 37 1 3.8375 -2.4818 0.0869 38 1 3.9160 0.3389 1.2541 39 1 3.9333 -1.1892 2.1674 40 1 1.2782 0.8840 2.4077 41 1 -0.2603 2.3678 6.5249 42 1 -1.9975 -0.8382 7.7768 43 1 -1.8540 -0.1682 9.4198 44 1 -2.0570 0.9229 8.0285 45 1 1.6226 -1.1923 8.5691 46 1 0.2944 -1.4040 9.7353 47 1 0.1513 -2.0733 8.0925 48 1 0.0083 2.1597 8.6976 49 1 0.2109 1.0684 10.0888 50 1 1.5391 1.2797 8.9225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942824255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:51 Heat of formation + Delta-G solvation = 74.369727 kcal Electronic energy + Delta-G solvation = -29685.357755 eV Core-core repulsion = 25750.254780 eV Total energy + Delta-G solvation = -3935.102975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.72547 -39.75378 -37.98585 -37.51988 -34.64711 -33.00690 -32.29072 -31.90950 -31.24234 -29.97000 -28.18504 -28.05466 -26.27034 -25.64780 -24.05605 -23.27719 -22.43212 -20.82251 -20.46982 -20.32477 -19.63321 -17.98529 -16.96649 -16.82280 -16.48822 -16.22192 -15.32591 -14.99207 -14.78571 -14.64895 -14.35148 -14.24493 -13.91435 -13.58796 -13.35878 -13.19920 -13.18379 -13.05077 -12.93835 -12.53071 -12.45973 -12.37122 -12.28876 -11.96676 -11.84657 -11.59511 -11.57717 -11.39472 -10.84893 -10.63357 -10.62596 -10.58977 -10.43769 -10.25628 -10.17338 -9.88951 -9.74110 -9.66417 -9.41342 -8.73841 -8.59531 -6.94420 -5.90670 -3.26313 1.28229 1.82015 1.94299 3.09448 3.35668 3.41905 3.52732 3.56318 3.74187 3.95936 4.00627 4.11209 4.41907 4.56896 4.64595 4.75675 4.88946 4.94001 4.96585 5.00801 5.07718 5.09932 5.16730 5.28801 5.35390 5.41434 5.46304 5.52694 5.66002 5.76239 5.83270 5.96019 5.96921 6.10023 6.12373 6.19051 6.20148 6.27720 6.37122 6.44022 6.47356 6.65883 6.69511 6.76655 6.79989 6.99327 7.56059 7.90911 7.99664 8.30406 8.36949 8.97624 9.75995 10.14102 11.25283 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.002359 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.663480 B =11865.981082 C =12048.345766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.080 0.920 4 C 0.136 3.864 5 N -0.607 5.607 6 C -0.257 4.257 7 H 0.086 0.914 8 C 0.022 3.978 9 N -0.909 5.909 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.158 3.842 17 H 0.086 0.914 18 N -0.699 5.699 19 C 0.612 3.388 20 O -0.522 6.522 21 C 0.142 3.858 22 N -0.483 5.483 23 C 0.187 3.813 24 N -0.294 5.294 25 C 0.167 3.833 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.160 4.160 29 N -0.248 5.248 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.407 0.593 41 H 0.221 0.779 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 3.310 29.679 32.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 H 0.098 0.902 4 C 0.009 3.991 5 N -0.330 5.330 6 C -0.385 4.385 7 H 0.104 0.896 8 C -0.177 4.177 9 N -0.553 5.553 10 Si 0.710 3.290 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.024 3.976 15 C -0.183 4.183 16 C 0.055 3.945 17 H 0.104 0.896 18 N -0.350 5.350 19 C 0.393 3.607 20 O -0.395 6.395 21 C -0.138 4.138 22 N -0.208 5.208 23 C -0.108 4.108 24 N -0.091 5.091 25 C 0.085 3.915 26 C -0.218 4.218 27 C -0.207 4.207 28 C -0.218 4.218 29 N -0.086 5.086 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.242 0.758 41 H 0.237 0.763 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.639 2.041 29.363 32.033 hybrid contribution -1.153 0.319 -0.096 1.200 sum -13.792 2.360 29.267 32.439 Atomic orbital electron populations 1.21802 0.95533 1.01667 1.01376 1.21985 0.94940 1.01133 0.95497 0.90184 1.21381 0.84971 0.97272 0.95442 1.44470 1.00628 1.70127 1.17784 1.18926 0.98478 1.35934 0.85145 0.89619 1.25275 0.98022 0.98727 0.95641 1.69835 1.43111 1.38184 1.04121 0.86979 0.82674 0.82448 0.76864 1.21622 1.23200 1.19308 1.20949 0.97357 0.94211 0.85044 1.22411 0.94379 1.01995 0.99538 1.21101 0.94138 0.97151 0.82112 0.89638 1.45957 1.64822 1.14963 1.09285 1.16305 0.78134 0.85334 0.80881 1.90825 1.49660 1.15058 1.83924 1.23901 1.06533 0.89165 0.94177 1.71294 1.16792 1.15126 1.17631 1.26297 1.02305 0.93834 0.88387 1.47788 1.43088 1.07249 1.10953 1.21165 0.96943 0.99025 0.74395 1.22268 0.91910 1.03661 1.03965 1.21999 1.01961 0.94903 1.01810 1.22266 1.02499 0.96559 1.00512 1.74300 1.14914 1.18388 1.01040 0.92925 0.92934 0.92455 0.95355 0.90607 0.92819 0.91523 0.95533 0.91628 0.92073 0.75783 0.76313 0.91208 0.89561 0.91327 0.91204 0.90301 0.90487 0.91105 0.89297 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.02 37.16 0.34 -1.88 16 2 C -0.11 -2.04 2.46 -90.50 -0.22 -2.26 16 3 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 4 C 0.14 2.98 3.47 -3.71 -0.01 2.97 16 5 N -0.61 -14.64 2.79 -172.09 -0.48 -15.12 16 6 C -0.26 -7.23 10.06 -15.06 -0.15 -7.38 16 7 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 8 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 9 N -0.91 -28.08 13.97 55.49 0.78 -27.30 16 10 Si 0.88 22.61 24.35 -169.99 -4.14 18.47 16 11 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 12 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 13 H -0.27 -6.79 6.46 56.52 0.36 -6.43 16 14 C 0.15 3.12 6.52 -3.56 -0.02 3.09 16 15 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 16 C 0.16 2.73 1.88 -67.89 -0.13 2.60 16 17 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 18 N -0.70 -10.73 4.36 -54.70 -0.24 -10.97 16 19 C 0.61 10.25 7.80 -12.32 -0.10 10.16 16 20 O -0.52 -10.35 16.75 5.32 0.09 -10.26 16 21 C 0.14 2.10 7.96 -156.35 -1.24 0.85 16 22 N -0.48 -5.99 11.09 -12.36 -0.14 -6.13 16 23 C 0.19 1.62 11.71 -90.48 -1.06 0.56 16 24 N -0.29 -2.71 3.17 -49.83 -0.16 -2.86 16 25 C 0.17 0.89 1.23 -131.82 -0.16 0.72 16 26 C -0.16 -0.59 8.72 37.16 0.32 -0.27 16 27 C -0.15 -0.87 8.04 37.16 0.30 -0.58 16 28 C -0.16 -0.45 8.28 37.16 0.31 -0.14 16 29 N -0.25 -3.36 11.09 32.08 0.36 -3.01 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.71 7.36 -51.93 -0.38 0.32 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.63 6.98 -51.93 -0.36 0.27 16 34 H 0.08 1.81 4.49 -51.93 -0.23 1.58 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.07 1.36 7.94 -51.93 -0.41 0.95 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.41 5.62 8.02 -40.82 -0.33 5.29 16 41 H 0.22 0.83 7.53 -52.49 -0.40 0.43 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.08 0.60 8.02 -51.93 -0.42 0.18 16 48 H 0.07 0.11 7.34 -51.93 -0.38 -0.27 16 49 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 50 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -35.50 393.35 -8.50 -44.00 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.42 Total: 1.00 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -2.08 Total: 6.26 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.12 Total: -65.40 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.50 -8.50 -44.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942824255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.366 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds