Wall clock time and date at job start Wed Apr 1 2020 00:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.52436 * 2 1 4 4 C 1.53197 * 109.49972 * 239.91913 * 2 1 3 5 5 N 1.46928 * 108.89211 * 185.34567 * 4 2 1 6 6 C 1.36933 * 120.62359 * 233.67040 * 5 4 2 7 7 H 1.08013 * 119.99605 * 152.76311 * 6 5 4 8 8 C 1.38807 * 120.00574 * 332.75883 * 6 5 4 9 9 N 1.31627 * 120.00090 * 159.74724 * 8 6 5 10 10 Si 1.86800 * 120.00018 * 339.75161 * 8 6 5 11 11 H 1.48503 * 109.47189 * 94.90601 * 10 8 6 12 12 H 1.48506 * 109.47114 * 214.90775 * 10 8 6 13 13 H 1.48502 * 109.46855 * 334.90779 * 10 8 6 14 14 C 1.47201 * 118.55605 * 53.53778 * 5 4 2 15 15 C 1.53190 * 108.85479 * 306.47422 * 14 5 4 16 16 C 1.53039 * 109.31017 * 54.65639 * 15 14 5 17 17 H 1.09001 * 109.45340 * 58.64930 * 16 15 14 18 18 N 1.46506 * 109.46207 * 178.61196 * 16 15 14 19 19 C 1.34775 * 119.99780 * 275.06994 * 18 16 15 20 20 O 1.21557 * 120.00434 * 359.97438 * 19 18 16 21 21 C 1.47874 * 119.99981 * 179.97438 * 19 18 16 22 22 N 1.34554 * 126.04484 * 359.69106 * 21 19 18 23 23 C 1.30873 * 107.26737 * 179.89121 * 22 21 19 24 24 N 1.34584 * 107.62494 * 0.36492 * 23 22 21 25 25 C 1.46496 * 125.75082 * 179.79935 * 24 23 22 26 26 C 1.53003 * 109.46724 * 74.98221 * 25 24 23 27 27 C 1.53000 * 109.47613 * 194.98519 * 25 24 23 28 28 C 1.53005 * 109.46928 * 314.98852 * 25 24 23 29 29 N 1.28853 * 108.50316 * 359.77196 * 24 23 22 30 30 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47167 * 300.08318 * 1 2 3 32 32 H 1.09001 * 109.46699 * 60.08354 * 1 2 3 33 33 H 1.09006 * 109.58378 * 305.20151 * 4 2 1 34 34 H 1.08993 * 109.58633 * 65.48241 * 4 2 1 35 35 H 0.96994 * 119.99979 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.53151 * 186.67664 * 14 5 4 37 37 H 1.08999 * 109.56489 * 66.29650 * 14 5 4 38 38 H 1.08997 * 109.49936 * 294.69912 * 15 14 5 39 39 H 1.09002 * 109.52193 * 174.61764 * 15 14 5 40 40 H 0.96998 * 120.00076 * 95.05517 * 18 16 15 41 41 H 1.07998 * 126.18634 * 180.12283 * 23 22 21 42 42 H 1.08998 * 109.47138 * 60.00779 * 26 25 24 43 43 H 1.09003 * 109.46851 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47492 * 300.00237 * 26 25 24 45 45 H 1.08998 * 109.47051 * 60.00138 * 27 25 24 46 46 H 1.08995 * 109.46984 * 180.02562 * 27 25 24 47 47 H 1.08993 * 109.46696 * 300.00270 * 27 25 24 48 48 H 1.09001 * 109.47355 * 59.99722 * 28 25 24 49 49 H 1.09003 * 109.47179 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47095 * 299.99470 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5049 -0.8291 -1.1730 6 6 4.2913 -0.3779 -2.1991 7 1 5.2996 -0.0452 -2.0006 8 6 3.7930 -0.3481 -3.4943 9 7 4.3550 0.4265 -4.3980 10 14 2.3248 -1.4072 -3.9547 11 1 1.0797 -0.6069 -3.8337 12 1 2.4751 -1.8803 -5.3543 13 1 2.2523 -2.5765 -3.0421 14 6 4.1052 -1.4267 0.0309 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7573 1.2352 18 7 1.5264 -0.0529 2.4453 19 6 1.3984 -0.7382 3.5987 20 8 1.7092 -1.9124 3.6459 21 6 0.8797 -0.0617 4.8070 22 7 0.5065 1.2282 4.8936 23 6 0.1067 1.4353 6.1224 24 7 0.2405 0.2773 6.7951 25 6 -0.0891 0.0644 8.2065 26 6 -1.6086 -0.0102 8.3696 27 6 0.5401 -1.2455 8.6853 28 6 0.4566 1.2266 9.0387 29 7 0.7070 -0.6126 5.9884 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6053 -1.7217 -1.2980 34 1 1.7616 -0.1593 -2.1390 35 1 4.0065 0.4475 -5.3030 36 1 5.1896 -1.3246 -0.0136 37 1 3.8375 -2.4818 0.0869 38 1 3.9160 0.3389 1.2541 39 1 3.9333 -1.1892 2.1674 40 1 1.2782 0.8840 2.4077 41 1 -0.2603 2.3678 6.5249 42 1 -1.9975 -0.8382 7.7768 43 1 -1.8540 -0.1682 9.4198 44 1 -2.0570 0.9229 8.0285 45 1 1.6226 -1.1923 8.5691 46 1 0.2944 -1.4040 9.7353 47 1 0.1513 -2.0733 8.0925 48 1 0.0083 2.1597 8.6976 49 1 0.2109 1.0684 10.0888 50 1 1.5391 1.2797 8.9225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942824255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:41 Heat of formation + Delta-G solvation = 50.654281 kcal Electronic energy + Delta-G solvation = -29686.386134 eV Core-core repulsion = 25750.254780 eV Total energy + Delta-G solvation = -3936.131354 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 10.66 seconds Orbital eigenvalues (eV) -44.53858 -41.12784 -39.36876 -38.20141 -36.29557 -34.27927 -33.67299 -33.49294 -32.29392 -31.52209 -28.49442 -28.39887 -27.71054 -27.27600 -25.48962 -24.06337 -23.92880 -22.44588 -21.56220 -21.21160 -21.07375 -19.19386 -18.54953 -17.67856 -17.60476 -17.46110 -16.87561 -16.13203 -16.04900 -15.82548 -15.38386 -15.18905 -15.03661 -15.01092 -14.78248 -14.65896 -14.35320 -14.12279 -13.79585 -13.47446 -13.29220 -13.24221 -13.23432 -13.02200 -13.00247 -12.76793 -12.57435 -12.38968 -12.35266 -12.07070 -11.99930 -11.97452 -11.76789 -11.52695 -11.47262 -11.45722 -11.41786 -11.26218 -10.71020 -10.59868 -10.09837 -8.97271 -8.15467 -5.48088 0.31824 1.10202 1.15642 1.30195 1.42845 1.51726 1.98054 2.25591 2.42020 3.04239 3.06993 3.26166 3.33017 3.61372 3.66292 3.76802 3.79550 3.88363 3.91491 4.02779 4.24719 4.43028 4.51642 4.54360 4.58303 4.58852 4.61253 4.67829 4.68951 4.75106 4.78063 4.80578 4.85456 4.92462 4.93880 4.98774 5.05091 5.10656 5.16965 5.18407 5.22130 5.27025 5.34890 5.38016 5.45540 5.68976 5.86369 6.13132 6.36230 6.89475 6.94562 7.11689 7.60618 8.01990 9.04192 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029822 B = 0.002359 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.663480 B =11865.981082 C =12048.345766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.078 0.922 4 C 0.130 3.870 5 N -0.619 5.619 6 C -0.247 4.247 7 H 0.054 0.946 8 C -0.033 4.033 9 N -0.955 5.955 10 Si 0.941 3.059 11 H -0.270 1.270 12 H -0.311 1.311 13 H -0.263 1.263 14 C 0.148 3.852 15 C -0.131 4.131 16 C 0.168 3.832 17 H 0.074 0.926 18 N -0.686 5.686 19 C 0.613 3.387 20 O -0.561 6.561 21 C 0.115 3.885 22 N -0.503 5.503 23 C 0.201 3.799 24 N -0.286 5.286 25 C 0.157 3.843 26 C -0.156 4.156 27 C -0.149 4.149 28 C -0.156 4.156 29 N -0.273 5.273 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.417 0.583 41 H 0.271 0.729 42 H 0.045 0.955 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.109 0.891 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.114 0.886 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 4.503 32.898 36.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.096 0.904 4 C 0.005 3.995 5 N -0.344 5.344 6 C -0.376 4.376 7 H 0.072 0.928 8 C -0.228 4.228 9 N -0.601 5.601 10 Si 0.770 3.230 11 H -0.196 1.196 12 H -0.240 1.240 13 H -0.187 1.187 14 C 0.023 3.977 15 C -0.171 4.171 16 C 0.064 3.936 17 H 0.092 0.908 18 N -0.337 5.337 19 C 0.396 3.604 20 O -0.437 6.437 21 C -0.164 4.164 22 N -0.229 5.229 23 C -0.093 4.093 24 N -0.083 5.083 25 C 0.077 3.923 26 C -0.214 4.214 27 C -0.207 4.207 28 C -0.214 4.214 29 N -0.113 5.113 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.254 0.746 41 H 0.286 0.714 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.128 0.872 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.132 0.868 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.480 3.253 32.641 36.272 hybrid contribution -0.238 -0.025 -0.889 0.921 sum -15.718 3.228 31.752 35.576 Atomic orbital electron populations 1.21768 0.93066 1.02286 1.02701 1.21788 0.96885 1.00210 0.93540 0.90361 1.21429 0.83606 0.97647 0.96822 1.44574 1.01492 1.70610 1.17681 1.18852 0.97753 1.34618 0.86395 0.92812 1.25865 1.01360 0.99923 0.95631 1.69955 1.45540 1.40105 1.04538 0.85982 0.80283 0.80853 0.75869 1.19623 1.24009 1.18720 1.21053 0.97225 0.94663 0.84789 1.22240 0.95156 1.01457 0.98228 1.20828 0.93336 0.96714 0.82770 0.90755 1.45698 1.64364 1.15203 1.08451 1.16566 0.77339 0.84903 0.81600 1.90793 1.51464 1.16777 1.84692 1.23446 1.08791 0.90314 0.93851 1.71235 1.17831 1.13983 1.19835 1.27210 1.00055 0.94877 0.87161 1.48200 1.41530 1.06754 1.11825 1.21663 0.98279 0.99798 0.72605 1.22286 0.90194 1.03489 1.05385 1.22016 1.00632 0.94679 1.03350 1.22309 1.01568 0.96094 1.01413 1.74225 1.15557 1.20187 1.01334 0.92681 0.90885 0.91882 0.94975 0.92360 0.92907 0.91970 0.94930 0.91761 0.91558 0.74613 0.71370 0.93535 0.86857 0.89868 0.93106 0.87196 0.93051 0.89025 0.86792 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.02 71.98 0.65 -3.28 16 2 C -0.10 -3.54 2.46 -10.72 -0.03 -3.57 16 3 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 4 C 0.13 5.62 3.47 86.36 0.30 5.92 16 5 N -0.62 -30.03 2.79 -698.38 -1.95 -31.97 16 6 C -0.25 -14.25 10.06 84.03 0.85 -13.40 16 7 H 0.05 3.38 8.06 -2.90 -0.02 3.36 16 8 C -0.03 -1.96 5.24 84.86 0.44 -1.51 16 9 N -0.96 -60.58 13.97 21.65 0.30 -60.28 16 10 Si 0.94 47.17 24.35 68.60 1.67 48.84 16 11 H -0.27 -12.59 6.70 99.48 0.67 -11.93 16 12 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 13 H -0.26 -12.77 6.46 99.48 0.64 -12.13 16 14 C 0.15 6.15 6.52 86.31 0.56 6.71 16 15 C -0.13 -4.69 5.65 30.67 0.17 -4.52 16 16 C 0.17 5.64 1.88 45.02 0.08 5.73 16 17 H 0.07 2.73 7.58 -2.39 -0.02 2.72 16 18 N -0.69 -20.39 4.36 -445.24 -1.94 -22.34 16 19 C 0.61 20.42 7.80 86.80 0.68 21.09 16 20 O -0.56 -22.60 16.75 -3.89 -0.07 -22.66 16 21 C 0.11 3.31 7.96 137.13 1.09 4.40 16 22 N -0.50 -11.49 11.09 -193.03 -2.14 -13.63 16 23 C 0.20 2.85 11.71 180.30 2.11 4.96 16 24 N -0.29 -4.71 3.17 -311.58 -0.99 -5.69 16 25 C 0.16 1.25 1.23 3.61 0.00 1.25 16 26 C -0.16 -0.64 8.72 71.98 0.63 -0.01 16 27 C -0.15 -1.58 8.04 71.98 0.58 -1.00 16 28 C -0.16 -0.25 8.28 71.98 0.60 0.35 16 29 N -0.27 -7.28 11.09 -52.43 -0.58 -7.86 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.76 7.36 -2.39 -0.02 1.74 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.37 6.98 -2.38 -0.02 1.36 16 34 H 0.06 2.72 4.49 -2.39 -0.01 2.71 16 35 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.06 2.59 7.94 -2.39 -0.02 2.57 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.42 10.85 8.02 -92.71 -0.74 10.11 16 41 H 0.27 0.60 7.53 -2.91 -0.02 0.58 16 42 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 47 H 0.05 0.81 8.02 -2.39 -0.02 0.79 16 48 H 0.09 -0.21 7.34 -2.39 -0.02 -0.22 16 49 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 50 H 0.06 0.29 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -80.87 393.35 3.12 -77.75 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.09 Total: 14.71 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 8.72 Total: 23.13 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -7.30 Total: -141.77 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.67 Total: 48.84 kcal Total: -80.87 3.12 -77.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942824255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.405 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.66 seconds