Wall clock time and date at job start Tue Mar 31 2020 23:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58604 * 2 1 4 4 C 1.53195 * 109.69991 * 120.34916 * 2 1 3 5 5 C 1.53049 * 109.31091 * 65.22618 * 4 2 1 6 6 H 1.09000 * 109.45968 * 301.34225 * 5 4 2 7 7 N 1.46498 * 109.45923 * 181.38331 * 5 4 2 8 8 C 1.34768 * 120.00271 * 154.99924 * 7 5 4 9 9 O 1.21600 * 119.99942 * 359.97438 * 8 7 5 10 10 C 1.47518 * 120.00334 * 179.97438 * 8 7 5 11 11 C 1.36607 * 125.77263 * 179.97438 * 10 8 7 12 12 N 1.34809 * 106.83841 * 179.97438 * 11 10 8 13 13 C 1.46499 * 126.59192 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47547 * 74.99371 * 13 12 11 15 15 C 1.53001 * 109.47099 * 194.99987 * 13 12 11 16 16 C 1.53000 * 109.47073 * 314.99797 * 13 12 11 17 17 N 1.40208 * 106.81420 * 359.97438 * 12 11 10 18 18 N 1.28763 * 108.36655 * 359.75127 * 17 12 11 19 19 C 1.53042 * 109.53765 * 61.36135 * 5 4 2 20 20 C 1.53195 * 109.31181 * 298.63520 * 19 5 4 21 21 N 1.46923 * 108.77684 * 54.63953 * 20 19 5 22 22 C 1.36930 * 120.63364 * 126.40898 * 21 20 19 23 23 H 1.08006 * 120.00498 * 207.89913 * 22 21 20 24 24 C 1.38814 * 119.99924 * 27.90388 * 22 21 20 25 25 N 1.31621 * 120.00065 * 17.07736 * 24 22 21 26 26 Si 1.86795 * 120.00160 * 197.07528 * 24 22 21 27 27 H 1.48501 * 109.47217 * 94.75039 * 26 24 22 28 28 H 1.48507 * 109.47330 * 214.75301 * 26 24 22 29 29 H 1.48500 * 109.47086 * 334.75268 * 26 24 22 30 30 H 1.08997 * 109.47173 * 180.28457 * 1 2 3 31 31 H 1.08996 * 109.47110 * 300.29085 * 1 2 3 32 32 H 1.09004 * 109.46534 * 60.28833 * 1 2 3 33 33 H 1.08999 * 109.49585 * 185.17300 * 4 2 1 34 34 H 1.08996 * 109.49813 * 305.24102 * 4 2 1 35 35 H 0.97006 * 119.99979 * 335.00129 * 7 5 4 36 36 H 1.08002 * 126.57283 * 359.97438 * 11 10 8 37 37 H 1.09003 * 109.47050 * 60.00033 * 14 13 12 38 38 H 1.09004 * 109.47238 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.47274 * 300.00789 * 14 13 12 40 40 H 1.08994 * 109.47525 * 59.99982 * 15 13 12 41 41 H 1.08999 * 109.46960 * 179.97438 * 15 13 12 42 42 H 1.09003 * 109.46694 * 299.99475 * 15 13 12 43 43 H 1.08997 * 109.47297 * 59.99853 * 16 13 12 44 44 H 1.08992 * 109.47485 * 180.02562 * 16 13 12 45 45 H 1.09003 * 109.46923 * 299.99911 * 16 13 12 46 46 H 1.08998 * 109.49339 * 178.68038 * 19 5 4 47 47 H 1.09004 * 109.49410 * 58.58506 * 19 5 4 48 48 H 1.08998 * 109.58527 * 294.84398 * 20 19 5 49 49 H 1.09007 * 109.57812 * 174.41995 * 20 19 5 50 50 H 0.96997 * 120.00170 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7287 1.2446 5 6 1.6472 -2.2043 1.1693 6 1 0.5624 -2.2839 1.0996 7 7 2.1109 -2.8975 2.3737 8 6 1.4864 -4.0170 2.7895 9 8 0.5378 -4.4516 2.1651 10 6 1.9536 -4.7154 4.0020 11 6 1.4105 -5.8534 4.5274 12 7 2.1289 -6.1574 5.6269 13 6 1.9163 -7.2981 6.5212 14 6 2.4173 -8.5762 5.8457 15 6 2.6859 -7.0747 7.8245 16 6 0.4235 -7.4347 6.8275 17 7 3.1194 -5.1726 5.7493 18 7 2.9899 -4.3433 4.7728 19 6 2.2857 -2.8449 -0.0653 20 6 1.7719 -2.1400 -1.3247 21 7 2.0226 -0.6981 -1.1953 22 6 2.7020 -0.0178 -2.1702 23 1 3.2687 0.8661 -1.9171 24 6 2.6624 -0.4640 -3.4841 25 7 1.7311 -1.3136 -3.8627 26 14 3.9306 0.1412 -4.7148 27 1 5.0527 -0.8288 -4.7868 28 1 3.3000 0.2689 -6.0532 29 1 4.4473 1.4646 -4.2827 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8873 32 1 -0.3632 0.5094 -0.8926 33 1 3.1325 -0.6475 1.2893 34 1 1.6109 -0.2786 2.1367 35 1 2.8674 -2.5506 2.8721 36 1 0.5674 -6.4038 4.1368 37 1 3.4808 -8.4789 5.6274 38 1 2.2595 -9.4248 6.5113 39 1 1.8690 -8.7352 4.9171 40 1 2.3290 -6.1643 8.3059 41 1 2.5274 -7.9232 8.4901 42 1 3.7495 -6.9774 7.6063 43 1 -0.1248 -7.5938 5.8990 44 1 0.2653 -8.2831 7.4932 45 1 0.0666 -6.5242 7.3088 46 1 2.0201 -3.9012 -0.1055 47 1 3.3695 -2.7436 -0.0082 48 1 0.7017 -2.3168 -1.4315 49 1 2.2971 -2.5252 -2.1989 50 1 1.7031 -1.6252 -4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947380083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:59 Heat of formation + Delta-G solvation = 70.841782 kcal Electronic energy + Delta-G solvation = -29471.462077 eV Core-core repulsion = 25536.206118 eV Total energy + Delta-G solvation = -3935.255958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -42.42935 -39.49600 -37.87031 -37.48666 -34.43145 -32.55803 -32.18976 -31.24749 -30.48320 -29.34429 -28.11868 -28.03811 -26.85682 -24.59297 -23.93911 -23.41651 -21.85852 -21.42292 -20.85493 -19.85154 -18.45344 -17.67706 -16.85673 -16.30533 -16.21792 -15.91018 -14.93959 -14.84602 -14.77448 -14.64854 -14.13034 -14.05203 -13.67870 -13.60558 -13.23889 -13.07557 -12.98520 -12.85689 -12.54840 -12.48735 -12.42240 -12.36858 -12.15552 -11.98537 -11.67809 -11.36523 -11.31980 -11.01430 -10.86801 -10.75088 -10.57224 -10.54364 -10.27782 -10.12090 -10.04369 -9.80194 -9.65753 -9.41423 -9.30078 -8.62875 -8.34782 -6.63460 -5.73428 -3.15813 0.99746 1.69224 1.72976 3.34815 3.41992 3.44053 3.48738 3.49820 3.78745 4.03420 4.09490 4.15432 4.53293 4.59560 4.73504 4.82386 4.89081 4.99811 5.00241 5.04447 5.14917 5.19104 5.35188 5.37226 5.44842 5.46036 5.50877 5.59296 5.68320 5.77069 5.87804 6.09337 6.14898 6.20826 6.33235 6.39201 6.50926 6.53897 6.66466 6.73409 6.85853 6.95914 7.02137 7.21992 7.45500 7.66823 7.75771 7.85403 7.92951 8.41918 8.51052 9.26730 9.90233 10.47092 11.34792 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002244 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.055996 B =12475.645506 C =12683.984689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.087 0.913 7 N -0.707 5.707 8 C 0.599 3.401 9 O -0.541 6.541 10 C -0.096 4.096 11 C 0.091 3.909 12 N -0.353 5.353 13 C 0.169 3.831 14 C -0.162 4.162 15 C -0.148 4.148 16 C -0.163 4.163 17 N -0.066 5.066 18 N -0.207 5.207 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.250 4.250 23 H 0.066 0.934 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.403 0.597 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.022 0.978 49 H 0.089 0.911 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 -14.010 23.850 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.105 0.895 7 N -0.356 5.356 8 C 0.383 3.617 9 O -0.417 6.417 10 C -0.236 4.236 11 C -0.066 4.066 12 N -0.139 5.139 13 C 0.087 3.913 14 C -0.220 4.220 15 C -0.206 4.206 16 C -0.221 4.221 17 N -0.046 5.046 18 N -0.081 5.081 19 C -0.188 4.188 20 C 0.048 3.952 21 N -0.307 5.307 22 C -0.380 4.380 23 H 0.084 0.916 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.732 3.268 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.107 0.893 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.795 -13.886 24.051 27.784 hybrid contribution 0.110 -0.138 -0.969 0.985 sum -0.685 -14.024 23.082 27.017 Atomic orbital electron populations 1.22303 0.98703 1.01122 1.00054 1.20441 0.91772 0.95120 0.86467 0.91641 1.22305 1.01357 0.94032 0.99573 1.21160 0.99809 0.91384 0.82933 0.89523 1.46141 1.34460 1.26122 1.28883 1.16779 0.82487 0.80636 0.81832 1.90813 1.28173 1.66286 1.56458 1.21639 0.99769 0.99824 1.02338 1.23250 0.98166 0.96936 0.88272 1.50803 1.22733 1.21069 1.19309 1.21083 0.97742 0.82640 0.89831 1.22295 1.02751 0.95292 1.01647 1.21991 1.01356 1.03252 0.94001 1.22303 0.92240 1.04065 1.03532 1.81934 1.08948 0.96217 1.17492 1.74643 1.13738 1.19124 1.00566 1.22586 1.00288 0.99157 0.96739 1.20748 0.97721 0.82877 0.93874 1.44171 1.63917 1.03443 1.19143 1.19189 1.21932 1.10214 0.86667 0.91639 1.25048 0.97726 1.00064 0.96806 1.70038 1.31814 1.35785 1.16858 0.86287 0.81289 0.78444 0.80822 1.21567 1.21876 1.20427 0.93172 0.94492 0.92622 0.91745 0.92494 0.76296 0.78286 0.91190 0.89643 0.91274 0.91230 0.90164 0.90611 0.91046 0.89405 0.91126 0.92885 0.92595 0.96028 0.89296 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.03 37.16 0.34 -2.83 16 2 C 0.17 3.50 3.28 -67.60 -0.22 3.28 16 3 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 4 C -0.13 -2.31 5.03 -26.61 -0.13 -2.45 16 5 C 0.15 2.72 2.21 -67.88 -0.15 2.57 16 6 H 0.09 1.71 5.94 -51.93 -0.31 1.40 16 7 N -0.71 -11.23 5.07 -54.81 -0.28 -11.51 16 8 C 0.60 9.74 7.78 -12.48 -0.10 9.64 16 9 O -0.54 -10.21 16.53 5.28 0.09 -10.12 16 10 C -0.10 -1.32 6.99 -83.55 -0.58 -1.91 16 11 C 0.09 0.96 10.43 -16.83 -0.18 0.79 16 12 N -0.35 -3.34 3.44 -48.35 -0.17 -3.51 16 13 C 0.17 0.96 1.25 -131.82 -0.16 0.80 16 14 C -0.16 -0.73 8.74 37.16 0.32 -0.41 16 15 C -0.15 -0.74 8.11 37.16 0.30 -0.44 16 16 C -0.16 -0.64 8.30 37.16 0.31 -0.33 16 17 N -0.07 -0.83 12.91 60.35 0.78 -0.05 16 18 N -0.21 -2.90 12.04 32.85 0.40 -2.51 16 19 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 20 C 0.17 4.24 4.89 -3.71 -0.02 4.22 16 21 N -0.59 -14.46 2.70 -164.77 -0.44 -14.91 16 22 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 23 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 24 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 25 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 26 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.05 1.01 5.74 -51.93 -0.30 0.71 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.40 5.76 8.29 -40.82 -0.34 5.42 16 36 H 0.20 1.60 7.63 -52.49 -0.40 1.20 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 43 H 0.07 0.26 7.44 -51.93 -0.39 -0.12 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 49 H 0.09 2.43 6.05 -51.93 -0.31 2.12 16 50 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -32.65 397.60 -7.01 -39.66 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.31 Total: 3.00 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.65 Total: 2.78 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.91 Total: -58.13 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.65 -7.01 -39.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947380083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.500 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds