Wall clock time and date at job start Tue Mar 31 2020 23:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.58604 * 2 1 4 4 C 1.53195 * 109.69991 * 120.34916 * 2 1 3 5 5 C 1.53049 * 109.31091 * 65.22618 * 4 2 1 6 6 H 1.09000 * 109.45968 * 301.34225 * 5 4 2 7 7 N 1.46498 * 109.45923 * 181.38331 * 5 4 2 8 8 C 1.34768 * 120.00271 * 154.99924 * 7 5 4 9 9 O 1.21600 * 119.99942 * 359.97438 * 8 7 5 10 10 C 1.47518 * 120.00334 * 179.97438 * 8 7 5 11 11 C 1.36607 * 125.77263 * 179.97438 * 10 8 7 12 12 N 1.34809 * 106.83841 * 179.97438 * 11 10 8 13 13 C 1.46499 * 126.59192 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47547 * 74.99371 * 13 12 11 15 15 C 1.53001 * 109.47099 * 194.99987 * 13 12 11 16 16 C 1.53000 * 109.47073 * 314.99797 * 13 12 11 17 17 N 1.40208 * 106.81420 * 359.97438 * 12 11 10 18 18 N 1.28763 * 108.36655 * 359.75127 * 17 12 11 19 19 C 1.53042 * 109.53765 * 61.36135 * 5 4 2 20 20 C 1.53195 * 109.31181 * 298.63520 * 19 5 4 21 21 N 1.46923 * 108.77684 * 54.63953 * 20 19 5 22 22 C 1.36930 * 120.63364 * 126.40898 * 21 20 19 23 23 H 1.08006 * 120.00498 * 207.89913 * 22 21 20 24 24 C 1.38814 * 119.99924 * 27.90388 * 22 21 20 25 25 N 1.31621 * 120.00065 * 17.07736 * 24 22 21 26 26 Si 1.86795 * 120.00160 * 197.07528 * 24 22 21 27 27 H 1.48501 * 109.47217 * 94.75039 * 26 24 22 28 28 H 1.48507 * 109.47330 * 214.75301 * 26 24 22 29 29 H 1.48500 * 109.47086 * 334.75268 * 26 24 22 30 30 H 1.08997 * 109.47173 * 180.28457 * 1 2 3 31 31 H 1.08996 * 109.47110 * 300.29085 * 1 2 3 32 32 H 1.09004 * 109.46534 * 60.28833 * 1 2 3 33 33 H 1.08999 * 109.49585 * 185.17300 * 4 2 1 34 34 H 1.08996 * 109.49813 * 305.24102 * 4 2 1 35 35 H 0.97006 * 119.99979 * 335.00129 * 7 5 4 36 36 H 1.08002 * 126.57283 * 359.97438 * 11 10 8 37 37 H 1.09003 * 109.47050 * 60.00033 * 14 13 12 38 38 H 1.09004 * 109.47238 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.47274 * 300.00789 * 14 13 12 40 40 H 1.08994 * 109.47525 * 59.99982 * 15 13 12 41 41 H 1.08999 * 109.46960 * 179.97438 * 15 13 12 42 42 H 1.09003 * 109.46694 * 299.99475 * 15 13 12 43 43 H 1.08997 * 109.47297 * 59.99853 * 16 13 12 44 44 H 1.08992 * 109.47485 * 180.02562 * 16 13 12 45 45 H 1.09003 * 109.46923 * 299.99911 * 16 13 12 46 46 H 1.08998 * 109.49339 * 178.68038 * 19 5 4 47 47 H 1.09004 * 109.49410 * 58.58506 * 19 5 4 48 48 H 1.08998 * 109.58527 * 294.84398 * 20 19 5 49 49 H 1.09007 * 109.57812 * 174.41995 * 20 19 5 50 50 H 0.96997 * 120.00170 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7287 1.2446 5 6 1.6472 -2.2043 1.1693 6 1 0.5624 -2.2839 1.0996 7 7 2.1109 -2.8975 2.3737 8 6 1.4864 -4.0170 2.7895 9 8 0.5378 -4.4516 2.1651 10 6 1.9536 -4.7154 4.0020 11 6 1.4105 -5.8534 4.5274 12 7 2.1289 -6.1574 5.6269 13 6 1.9163 -7.2981 6.5212 14 6 2.4173 -8.5762 5.8457 15 6 2.6859 -7.0747 7.8245 16 6 0.4235 -7.4347 6.8275 17 7 3.1194 -5.1726 5.7493 18 7 2.9899 -4.3433 4.7728 19 6 2.2857 -2.8449 -0.0653 20 6 1.7719 -2.1400 -1.3247 21 7 2.0226 -0.6981 -1.1953 22 6 2.7020 -0.0178 -2.1702 23 1 3.2687 0.8661 -1.9171 24 6 2.6624 -0.4640 -3.4841 25 7 1.7311 -1.3136 -3.8627 26 14 3.9306 0.1412 -4.7148 27 1 5.0527 -0.8288 -4.7868 28 1 3.3000 0.2689 -6.0532 29 1 4.4473 1.4646 -4.2827 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8873 32 1 -0.3632 0.5094 -0.8926 33 1 3.1325 -0.6475 1.2893 34 1 1.6109 -0.2786 2.1367 35 1 2.8674 -2.5506 2.8721 36 1 0.5674 -6.4038 4.1368 37 1 3.4808 -8.4789 5.6274 38 1 2.2595 -9.4248 6.5113 39 1 1.8690 -8.7352 4.9171 40 1 2.3290 -6.1643 8.3059 41 1 2.5274 -7.9232 8.4901 42 1 3.7495 -6.9774 7.6063 43 1 -0.1248 -7.5938 5.8990 44 1 0.2653 -8.2831 7.4932 45 1 0.0666 -6.5242 7.3088 46 1 2.0201 -3.9012 -0.1055 47 1 3.3695 -2.7436 -0.0082 48 1 0.7017 -2.3168 -1.4315 49 1 2.2971 -2.5252 -2.1989 50 1 1.7031 -1.6252 -4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947380083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:48 Heat of formation + Delta-G solvation = 49.199735 kcal Electronic energy + Delta-G solvation = -29472.400546 eV Core-core repulsion = 25536.206118 eV Total energy + Delta-G solvation = -3936.194428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 10.81 seconds Orbital eigenvalues (eV) -43.32184 -40.87878 -39.24684 -38.28436 -36.03305 -34.31849 -33.04926 -32.61677 -31.98272 -30.97264 -28.61723 -28.42338 -28.36332 -26.27710 -24.98626 -24.61026 -23.63362 -22.86919 -21.78677 -20.96139 -20.00481 -18.96090 -18.27491 -17.39240 -17.31139 -17.11424 -16.62309 -15.87819 -15.73910 -15.71130 -15.48667 -15.24763 -15.02951 -14.89659 -14.66199 -14.23335 -14.15551 -13.87724 -13.63509 -13.38889 -13.32235 -13.18251 -13.13834 -12.89895 -12.77889 -12.65651 -12.53540 -12.45615 -12.35343 -12.28707 -12.02912 -11.97771 -11.96381 -11.76868 -11.48118 -11.27849 -11.27272 -10.96154 -10.54272 -10.40597 -9.95826 -8.66416 -7.83621 -5.28361 0.14391 0.61642 1.02885 1.48048 1.49776 1.58554 2.12105 2.24627 2.53412 3.15945 3.24553 3.31990 3.63565 3.64820 3.72069 3.77094 3.86778 3.94090 4.10396 4.18846 4.30854 4.46513 4.51688 4.53805 4.57378 4.60052 4.67621 4.72901 4.75071 4.78238 4.79515 4.81221 4.87514 4.92759 5.07558 5.10133 5.14371 5.18833 5.19051 5.27033 5.35476 5.47159 5.49748 5.54170 5.58750 5.70709 5.78623 6.43307 6.46596 6.91596 7.16516 7.18167 7.89996 8.42276 9.23006 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024838 B = 0.002244 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.055996 B =12475.645506 C =12683.984689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.072 0.928 7 N -0.700 5.700 8 C 0.601 3.399 9 O -0.571 6.571 10 C -0.121 4.121 11 C 0.106 3.894 12 N -0.338 5.338 13 C 0.158 3.842 14 C -0.159 4.159 15 C -0.147 4.147 16 C -0.161 4.161 17 N -0.081 5.081 18 N -0.226 5.226 19 C -0.133 4.133 20 C 0.185 3.815 21 N -0.600 5.600 22 C -0.256 4.256 23 H 0.070 0.930 24 C -0.053 4.053 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.266 1.266 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.413 0.587 36 H 0.226 0.774 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.055 0.945 48 H -0.004 1.004 49 H 0.054 0.946 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 -14.776 26.627 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.088 0.912 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.091 0.909 7 N -0.350 5.350 8 C 0.387 3.613 9 O -0.450 6.450 10 C -0.260 4.260 11 C -0.053 4.053 12 N -0.124 5.124 13 C 0.078 3.922 14 C -0.217 4.217 15 C -0.204 4.204 16 C -0.219 4.219 17 N -0.061 5.061 18 N -0.099 5.099 19 C -0.173 4.173 20 C 0.059 3.941 21 N -0.322 5.322 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.248 4.248 25 N -0.581 5.581 26 Si 0.794 3.206 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.190 1.190 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.249 0.751 36 H 0.242 0.758 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.014 0.986 49 H 0.072 0.928 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.555 -14.641 26.904 30.635 hybrid contribution 0.007 0.014 -1.711 1.711 sum -0.548 -14.628 25.193 29.137 Atomic orbital electron populations 1.22178 0.97877 1.00518 1.00624 1.20692 0.92419 0.95410 0.86042 0.91230 1.22148 1.01753 0.92951 0.99055 1.20814 0.98659 0.91966 0.82717 0.90948 1.45924 1.34806 1.26153 1.28084 1.17048 0.81833 0.80269 0.82193 1.90794 1.29526 1.67038 1.57659 1.21389 1.01098 1.01259 1.02289 1.23599 0.98064 0.95793 0.87816 1.51177 1.21206 1.20937 1.19065 1.21605 0.99415 0.81690 0.89519 1.22322 1.01640 0.95456 1.02303 1.22021 1.00222 1.04122 0.94075 1.22347 0.90383 1.04822 1.04337 1.81857 1.10066 0.96915 1.17259 1.74611 1.14161 1.20061 1.01054 1.22351 1.00119 0.98538 0.96321 1.20426 0.95719 0.83544 0.94418 1.44375 1.64285 1.03620 1.19937 1.19532 1.21683 1.10053 0.87315 0.91193 1.25792 0.99521 1.00829 0.98654 1.70198 1.33637 1.37490 1.16809 0.85283 0.78792 0.78346 0.78224 1.21644 1.22460 1.19035 0.94392 0.90733 0.95084 0.91222 0.89198 0.75114 0.75757 0.92705 0.86731 0.91261 0.92278 0.87124 0.92060 0.90584 0.86646 0.91998 0.93402 0.92612 0.98576 0.92804 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.85 9.03 71.98 0.65 -5.20 16 2 C 0.16 6.49 3.28 44.98 0.15 6.64 16 3 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 4 C -0.12 -3.93 5.03 30.68 0.15 -3.78 16 5 C 0.16 5.78 2.21 45.02 0.10 5.88 16 6 H 0.07 2.84 5.94 -2.39 -0.01 2.83 16 7 N -0.70 -21.56 5.07 -445.58 -2.26 -23.82 16 8 C 0.60 19.18 7.78 86.69 0.67 19.85 16 9 O -0.57 -21.46 16.53 -4.03 -0.07 -21.52 16 10 C -0.12 -3.21 6.99 40.82 0.29 -2.92 16 11 C 0.11 2.07 10.43 83.85 0.87 2.94 16 12 N -0.34 -5.85 3.44 -306.90 -1.06 -6.90 16 13 C 0.16 1.41 1.25 3.60 0.00 1.41 16 14 C -0.16 -1.01 8.74 71.98 0.63 -0.38 16 15 C -0.15 -1.15 8.11 71.98 0.58 -0.57 16 16 C -0.16 -0.74 8.30 71.98 0.60 -0.14 16 17 N -0.08 -1.95 12.91 37.02 0.48 -1.47 16 18 N -0.23 -6.15 12.04 -49.99 -0.60 -6.75 16 19 C -0.13 -5.54 5.65 30.67 0.17 -5.37 16 20 C 0.19 9.39 4.89 86.36 0.42 9.81 16 21 N -0.60 -30.07 2.70 -675.21 -1.82 -31.90 16 22 C -0.26 -14.05 9.58 84.04 0.81 -13.25 16 23 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 24 C -0.05 -2.99 4.91 84.86 0.42 -2.57 16 25 N -0.94 -56.56 11.19 21.65 0.24 -56.32 16 26 Si 0.96 45.67 29.59 68.60 2.03 47.70 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.04 1.53 5.74 -2.39 -0.01 1.51 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.41 11.22 8.29 -92.70 -0.77 10.45 16 36 H 0.23 3.08 7.63 -2.91 -0.02 3.06 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.11 0.08 8.14 -2.38 -0.02 0.07 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.06 0.68 8.06 -2.39 -0.02 0.66 16 43 H 0.08 0.31 7.44 -2.39 -0.02 0.29 16 44 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.00 -0.21 7.50 -2.39 -0.02 -0.23 16 49 H 0.05 3.09 6.05 -2.38 -0.01 3.08 16 50 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -73.44 397.60 3.63 -69.82 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.17 Total: 18.82 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.52 Total: 12.35 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -5.02 Total: -127.16 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.52 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -73.44 3.63 -69.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947380083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.015 kcal (2) G-P(sol) polarization free energy of solvation -73.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.81 seconds