Wall clock time and date at job start Tue Mar 31 2020 23:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58416 * 2 1 4 4 C 1.53194 * 109.58454 * 120.42909 * 2 1 3 5 5 C 1.53043 * 109.31000 * 174.42629 * 4 2 1 6 6 H 1.09000 * 109.46416 * 58.65193 * 5 4 2 7 7 N 1.46502 * 109.45919 * 178.62468 * 5 4 2 8 8 C 1.34774 * 119.99993 * 204.99739 * 7 5 4 9 9 O 1.21593 * 120.00329 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.00117 * 180.02562 * 8 7 5 11 11 C 1.36597 * 125.77534 * 179.71534 * 10 8 7 12 12 N 1.34809 * 106.83967 * 179.89719 * 11 10 8 13 13 C 1.46502 * 126.59083 * 180.13452 * 12 11 10 14 14 C 1.52999 * 109.47461 * 75.29297 * 13 12 11 15 15 C 1.53005 * 109.47024 * 195.29412 * 13 12 11 16 16 C 1.52999 * 109.47122 * 315.29082 * 13 12 11 17 17 N 1.40209 * 106.81460 * 0.35970 * 12 11 10 18 18 N 1.28767 * 108.36592 * 359.76767 * 17 12 11 19 19 C 1.53038 * 109.53784 * 298.63159 * 5 4 2 20 20 C 1.52765 * 109.38424 * 61.24001 * 19 5 4 21 21 N 1.46924 * 109.58908 * 239.71713 * 2 1 3 22 22 C 1.36940 * 120.62954 * 6.57746 * 21 2 1 23 23 H 1.07998 * 119.99935 * 330.98160 * 22 21 2 24 24 C 1.38807 * 119.99862 * 150.97806 * 22 21 2 25 25 N 1.31628 * 120.00356 * 336.07655 * 24 22 21 26 26 Si 1.86800 * 120.00149 * 156.07948 * 24 22 21 27 27 H 1.48504 * 109.47268 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.46887 * 299.99602 * 26 24 22 29 29 H 1.48493 * 109.47418 * 59.99607 * 26 24 22 30 30 H 1.09007 * 109.47126 * 180.28080 * 1 2 3 31 31 H 1.08998 * 109.47477 * 300.28209 * 1 2 3 32 32 H 1.08996 * 109.47286 * 60.28460 * 1 2 3 33 33 H 1.09005 * 109.49477 * 294.37343 * 4 2 1 34 34 H 1.08995 * 109.49927 * 54.46902 * 4 2 1 35 35 H 0.97001 * 119.99881 * 25.00063 * 7 5 4 36 36 H 1.07999 * 126.57111 * 0.04415 * 11 10 8 37 37 H 1.08998 * 109.46715 * 59.99890 * 14 13 12 38 38 H 1.09000 * 109.47337 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46874 * 299.99962 * 14 13 12 40 40 H 1.09001 * 109.46650 * 59.99934 * 15 13 12 41 41 H 1.08991 * 109.47124 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.46702 * 300.00080 * 15 13 12 43 43 H 1.09001 * 109.47102 * 60.00106 * 16 13 12 44 44 H 1.09000 * 109.47255 * 180.02562 * 16 13 12 45 45 H 1.09001 * 109.47573 * 300.00691 * 16 13 12 46 46 H 1.08999 * 109.49855 * 181.31880 * 19 5 4 47 47 H 1.09002 * 109.49456 * 301.41850 * 19 5 4 48 48 H 1.08997 * 109.50761 * 185.70928 * 20 19 5 49 49 H 1.08995 * 109.43030 * 65.42464 * 20 19 5 50 50 H 0.97004 * 119.99318 * 354.30837 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1691 6 1 4.0061 0.1460 1.0995 7 7 4.0652 -1.5190 2.3734 8 6 5.3294 -1.3060 2.7891 9 8 6.0571 -0.5585 2.1645 10 6 5.8307 -1.9806 4.0015 11 6 7.0867 -1.8552 4.5236 12 7 7.1307 -2.6302 5.6258 13 6 8.2768 -2.8126 6.5199 14 6 8.4408 -1.5710 7.3987 15 6 8.0422 -4.0375 7.4064 16 6 9.5443 -3.0200 5.6886 17 7 5.8704 -3.2322 5.7488 18 7 5.1306 -2.8272 4.7759 19 6 3.9570 -1.6656 -0.0655 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1953 22 6 1.1537 -1.1108 -2.1699 23 1 0.1361 -1.3660 -1.9133 24 6 1.5808 -1.2012 -3.4876 25 7 2.6038 -0.4821 -3.8987 26 14 0.7037 -2.3432 -4.6775 27 1 1.3486 -2.2573 -6.0124 28 1 0.7873 -3.7388 -4.1768 29 1 -0.7217 -1.9420 -4.7891 30 1 -0.3634 -1.0277 0.0050 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 1.7659 -0.1695 2.1366 34 1 1.6029 -1.7269 1.2892 35 1 3.4848 -2.1156 2.8715 36 1 7.8896 -1.2493 4.1302 37 1 7.5377 -1.4233 7.9910 38 1 9.2937 -1.7065 8.0637 39 1 8.6079 -0.6984 6.7672 40 1 7.9254 -4.9220 6.7802 41 1 8.8950 -4.1734 8.0713 42 1 7.1391 -3.8897 7.9986 43 1 9.7115 -2.1475 5.0571 44 1 10.3969 -3.1562 6.3538 45 1 9.4275 -3.9046 5.0624 46 1 5.0413 -1.7694 -0.1058 47 1 3.4983 -2.6527 -0.0085 48 1 3.6504 -1.5770 -2.1944 49 1 3.9928 -0.0031 -1.4310 50 1 3.0069 0.1711 -3.3056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947380085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:17 Heat of formation + Delta-G solvation = 68.459544 kcal Electronic energy + Delta-G solvation = -29395.707887 eV Core-core repulsion = 25460.348628 eV Total energy + Delta-G solvation = -3935.359260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.47057 -39.55269 -37.91532 -37.56776 -34.68176 -32.62245 -32.27244 -31.63490 -30.74412 -29.15984 -28.14210 -28.05710 -26.38886 -24.93547 -23.99820 -23.41951 -21.86367 -21.11866 -20.67992 -19.88058 -19.15979 -17.81885 -16.94621 -16.46644 -16.32692 -15.87566 -15.01660 -14.86966 -14.82206 -14.73845 -14.29694 -14.11958 -13.73368 -13.51879 -13.32228 -13.23493 -13.14518 -13.01444 -12.88993 -12.60308 -12.50778 -12.40793 -12.01732 -11.70849 -11.63550 -11.37770 -11.32417 -11.23412 -10.91238 -10.62895 -10.58146 -10.55527 -10.29002 -10.12189 -10.03016 -9.92650 -9.80645 -9.45765 -9.10917 -8.68387 -8.30344 -6.80835 -5.97341 -3.16293 0.95762 1.64191 1.69289 3.27325 3.37354 3.53403 3.57233 3.74794 3.75520 4.00779 4.05180 4.12790 4.54331 4.64062 4.69958 4.80027 4.85203 4.96394 4.97643 5.01902 5.12733 5.16304 5.19746 5.32171 5.34820 5.47814 5.48426 5.53276 5.56117 5.72800 5.76854 5.93485 6.12485 6.17071 6.21568 6.30663 6.35863 6.39059 6.50738 6.57011 6.68938 6.84576 6.98151 7.06319 7.16209 7.27762 7.60715 7.86987 8.10516 8.34175 8.65786 9.19482 9.92977 10.37772 11.30119 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002234 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.788353 B =12529.841404 C =12836.653461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.173 3.827 3 H 0.025 0.975 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.083 0.917 7 N -0.707 5.707 8 C 0.600 3.400 9 O -0.541 6.541 10 C -0.097 4.097 11 C 0.091 3.909 12 N -0.352 5.352 13 C 0.169 3.831 14 C -0.161 4.161 15 C -0.149 4.149 16 C -0.164 4.164 17 N -0.065 5.065 18 N -0.207 5.207 19 C -0.142 4.142 20 C 0.155 3.845 21 N -0.595 5.595 22 C -0.345 4.345 23 H 0.061 0.939 24 C -0.026 4.026 25 N -0.918 5.918 26 Si 1.063 2.937 27 H -0.286 1.286 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.404 0.596 36 H 0.201 0.799 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.019 0.981 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.124 -4.143 24.302 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.066 3.934 3 H 0.043 0.957 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.101 0.899 7 N -0.356 5.356 8 C 0.384 3.616 9 O -0.417 6.417 10 C -0.237 4.237 11 C -0.065 4.065 12 N -0.139 5.139 13 C 0.087 3.913 14 C -0.219 4.219 15 C -0.206 4.206 16 C -0.222 4.222 17 N -0.045 5.045 18 N -0.081 5.081 19 C -0.182 4.182 20 C 0.028 3.972 21 N -0.319 5.319 22 C -0.474 4.474 23 H 0.078 0.922 24 C -0.228 4.228 25 N -0.558 5.558 26 Si 0.893 3.107 27 H -0.212 1.212 28 H -0.222 1.222 29 H -0.221 1.221 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.784 -5.163 23.117 26.916 hybrid contribution 0.457 0.928 1.389 1.732 sum 13.241 -4.235 24.506 28.175 Atomic orbital electron populations 1.21767 0.95533 1.01499 1.00231 1.20345 0.93338 0.93272 0.86420 0.95720 1.22380 0.93503 1.01909 0.99647 1.21057 0.94428 0.96599 0.83031 0.89907 1.46094 1.12700 1.48006 1.28797 1.16786 0.82377 0.80612 0.81851 1.90812 1.56658 1.37783 1.56465 1.21604 0.93107 1.06680 1.02275 1.23245 0.99573 0.95525 0.88202 1.50813 1.12546 1.31361 1.19151 1.21094 0.82267 0.98500 0.89448 1.22289 1.03804 0.95920 0.99913 1.21994 1.03618 0.95576 0.99438 1.22310 0.95449 1.03691 1.00741 1.81939 0.86675 1.18259 1.17624 1.74650 1.25060 1.07758 1.00603 1.22387 0.99892 0.99779 0.96170 1.20823 0.84307 0.96904 0.95121 1.44233 1.02543 1.65367 1.19792 1.19941 0.95893 1.43401 0.88203 0.92164 1.25829 1.00193 1.01007 0.95737 1.70770 1.25731 1.21285 1.38009 0.83552 0.74985 0.75928 0.76223 1.21209 1.22167 1.22060 0.92700 0.94323 0.91900 0.92448 0.91560 0.76169 0.78268 0.91211 0.89616 0.91317 0.91193 0.90131 0.90619 0.91052 0.89369 0.91070 0.92596 0.92227 0.90095 0.96342 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.94 37.16 0.30 -2.25 16 2 C 0.17 3.61 3.50 -67.60 -0.24 3.37 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.36 4.84 -26.61 -0.13 -2.49 16 5 C 0.15 2.74 2.42 -67.89 -0.16 2.57 16 6 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 7 N -0.71 -11.13 5.07 -54.81 -0.28 -11.41 16 8 C 0.60 9.65 7.78 -12.48 -0.10 9.55 16 9 O -0.54 -10.10 16.53 5.28 0.09 -10.01 16 10 C -0.10 -1.32 6.99 -83.55 -0.58 -1.91 16 11 C 0.09 0.96 10.43 -16.84 -0.18 0.78 16 12 N -0.35 -3.30 3.44 -48.35 -0.17 -3.47 16 13 C 0.17 0.95 1.25 -131.82 -0.16 0.78 16 14 C -0.16 -0.68 8.74 37.16 0.32 -0.35 16 15 C -0.15 -0.74 8.11 37.16 0.30 -0.44 16 16 C -0.16 -0.65 8.30 37.16 0.31 -0.34 16 17 N -0.07 -0.81 12.91 60.35 0.78 -0.03 16 18 N -0.21 -2.88 12.04 32.85 0.40 -2.48 16 19 C -0.14 -2.87 5.63 -26.83 -0.15 -3.03 16 20 C 0.15 3.72 4.66 -3.93 -0.02 3.70 16 21 N -0.59 -14.72 2.84 -165.04 -0.47 -15.19 16 22 C -0.35 -9.42 8.50 -15.06 -0.13 -9.54 16 23 H 0.06 1.63 6.27 -52.49 -0.33 1.30 16 24 C -0.03 -0.73 4.70 -17.43 -0.08 -0.81 16 25 N -0.92 -27.67 12.46 55.49 0.69 -26.97 16 26 Si 1.06 25.41 29.98 -169.99 -5.10 20.32 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.05 1.07 7.44 -51.92 -0.39 0.68 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.31 7.62 -51.93 -0.40 0.91 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 5.75 8.29 -40.82 -0.34 5.41 16 36 H 0.20 1.57 7.62 -52.49 -0.40 1.17 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.45 8.06 -51.93 -0.42 0.04 16 43 H 0.07 0.26 7.43 -51.93 -0.39 -0.12 16 44 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.08 2.17 6.39 -51.93 -0.33 1.84 16 49 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 50 H 0.27 8.21 6.68 -40.82 -0.27 7.94 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -33.35 397.45 -7.12 -40.47 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.35 Total: 3.17 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -0.70 Total: -0.39 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.95 Total: -59.55 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.10 Total: 20.32 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.35 -7.12 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947380085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.927 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds