Wall clock time and date at job start Tue Mar 31 2020 23:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58416 * 2 1 4 4 C 1.53194 * 109.58454 * 120.42909 * 2 1 3 5 5 C 1.53043 * 109.31000 * 174.42629 * 4 2 1 6 6 H 1.09000 * 109.46416 * 58.65193 * 5 4 2 7 7 N 1.46502 * 109.45919 * 178.62468 * 5 4 2 8 8 C 1.34774 * 119.99993 * 204.99739 * 7 5 4 9 9 O 1.21593 * 120.00329 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.00117 * 180.02562 * 8 7 5 11 11 C 1.36597 * 125.77534 * 179.71534 * 10 8 7 12 12 N 1.34809 * 106.83967 * 179.89719 * 11 10 8 13 13 C 1.46502 * 126.59083 * 180.13452 * 12 11 10 14 14 C 1.52999 * 109.47461 * 75.29297 * 13 12 11 15 15 C 1.53005 * 109.47024 * 195.29412 * 13 12 11 16 16 C 1.52999 * 109.47122 * 315.29082 * 13 12 11 17 17 N 1.40209 * 106.81460 * 0.35970 * 12 11 10 18 18 N 1.28767 * 108.36592 * 359.76767 * 17 12 11 19 19 C 1.53038 * 109.53784 * 298.63159 * 5 4 2 20 20 C 1.52765 * 109.38424 * 61.24001 * 19 5 4 21 21 N 1.46924 * 109.58908 * 239.71713 * 2 1 3 22 22 C 1.36940 * 120.62954 * 6.57746 * 21 2 1 23 23 H 1.07998 * 119.99935 * 330.98160 * 22 21 2 24 24 C 1.38807 * 119.99862 * 150.97806 * 22 21 2 25 25 N 1.31628 * 120.00356 * 336.07655 * 24 22 21 26 26 Si 1.86800 * 120.00149 * 156.07948 * 24 22 21 27 27 H 1.48504 * 109.47268 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.46887 * 299.99602 * 26 24 22 29 29 H 1.48493 * 109.47418 * 59.99607 * 26 24 22 30 30 H 1.09007 * 109.47126 * 180.28080 * 1 2 3 31 31 H 1.08998 * 109.47477 * 300.28209 * 1 2 3 32 32 H 1.08996 * 109.47286 * 60.28460 * 1 2 3 33 33 H 1.09005 * 109.49477 * 294.37343 * 4 2 1 34 34 H 1.08995 * 109.49927 * 54.46902 * 4 2 1 35 35 H 0.97001 * 119.99881 * 25.00063 * 7 5 4 36 36 H 1.07999 * 126.57111 * 0.04415 * 11 10 8 37 37 H 1.08998 * 109.46715 * 59.99890 * 14 13 12 38 38 H 1.09000 * 109.47337 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46874 * 299.99962 * 14 13 12 40 40 H 1.09001 * 109.46650 * 59.99934 * 15 13 12 41 41 H 1.08991 * 109.47124 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.46702 * 300.00080 * 15 13 12 43 43 H 1.09001 * 109.47102 * 60.00106 * 16 13 12 44 44 H 1.09000 * 109.47255 * 180.02562 * 16 13 12 45 45 H 1.09001 * 109.47573 * 300.00691 * 16 13 12 46 46 H 1.08999 * 109.49855 * 181.31880 * 19 5 4 47 47 H 1.09002 * 109.49456 * 301.41850 * 19 5 4 48 48 H 1.08997 * 109.50761 * 185.70928 * 20 19 5 49 49 H 1.08995 * 109.43030 * 65.42464 * 20 19 5 50 50 H 0.97004 * 119.99318 * 354.30837 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5675 -0.8494 1.1691 6 1 4.0061 0.1460 1.0995 7 7 4.0652 -1.5190 2.3734 8 6 5.3294 -1.3060 2.7891 9 8 6.0571 -0.5585 2.1645 10 6 5.8307 -1.9806 4.0015 11 6 7.0867 -1.8552 4.5236 12 7 7.1307 -2.6302 5.6258 13 6 8.2768 -2.8126 6.5199 14 6 8.4408 -1.5710 7.3987 15 6 8.0422 -4.0375 7.4064 16 6 9.5443 -3.0200 5.6886 17 7 5.8704 -3.2322 5.7488 18 7 5.1306 -2.8272 4.7759 19 6 3.9570 -1.6656 -0.0655 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1953 22 6 1.1537 -1.1108 -2.1699 23 1 0.1361 -1.3660 -1.9133 24 6 1.5808 -1.2012 -3.4876 25 7 2.6038 -0.4821 -3.8987 26 14 0.7037 -2.3432 -4.6775 27 1 1.3486 -2.2573 -6.0124 28 1 0.7873 -3.7388 -4.1768 29 1 -0.7217 -1.9420 -4.7891 30 1 -0.3634 -1.0277 0.0050 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5094 -0.8925 33 1 1.7659 -0.1695 2.1366 34 1 1.6029 -1.7269 1.2892 35 1 3.4848 -2.1156 2.8715 36 1 7.8896 -1.2493 4.1302 37 1 7.5377 -1.4233 7.9910 38 1 9.2937 -1.7065 8.0637 39 1 8.6079 -0.6984 6.7672 40 1 7.9254 -4.9220 6.7802 41 1 8.8950 -4.1734 8.0713 42 1 7.1391 -3.8897 7.9986 43 1 9.7115 -2.1475 5.0571 44 1 10.3969 -3.1562 6.3538 45 1 9.4275 -3.9046 5.0624 46 1 5.0413 -1.7694 -0.1058 47 1 3.4983 -2.6527 -0.0085 48 1 3.6504 -1.5770 -2.1944 49 1 3.9928 -0.0031 -1.4310 50 1 3.0069 0.1711 -3.3056 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947380085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:10 Heat of formation + Delta-G solvation = 46.071691 kcal Electronic energy + Delta-G solvation = -29396.678698 eV Core-core repulsion = 25460.348628 eV Total energy + Delta-G solvation = -3936.330070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.36 seconds Orbital eigenvalues (eV) -43.35577 -40.93078 -39.36921 -38.31240 -36.28932 -34.40353 -33.29362 -32.97224 -31.99146 -30.81947 -28.50085 -28.43523 -28.03502 -26.70011 -24.95525 -24.61721 -23.59343 -22.43444 -21.75504 -21.24315 -20.64222 -19.01797 -18.56322 -17.38215 -17.27071 -17.14032 -16.62841 -16.14092 -15.80673 -15.71677 -15.43159 -15.31269 -15.13065 -15.05077 -14.88732 -14.72753 -14.27360 -13.67323 -13.49187 -13.39951 -13.35313 -13.20492 -13.04879 -12.79587 -12.78386 -12.68675 -12.47628 -12.40550 -12.37324 -12.34424 -11.99218 -11.96621 -11.88500 -11.77611 -11.62199 -11.33643 -11.30576 -11.00564 -10.47107 -10.41975 -10.06095 -8.88616 -8.16058 -5.33608 0.11144 0.57274 0.99850 1.59913 1.67789 1.85556 2.04007 2.18911 2.69105 3.11386 3.21653 3.26702 3.49597 3.62796 3.67510 3.75184 3.78560 3.89502 3.94627 4.16147 4.17338 4.26219 4.47382 4.48741 4.55439 4.58413 4.59577 4.62740 4.65859 4.69479 4.75315 4.77796 4.79730 4.86223 4.96691 5.00654 5.04436 5.05985 5.17565 5.18537 5.22925 5.25052 5.40906 5.45045 5.51448 5.52670 5.96937 6.39230 6.45739 6.87480 7.09667 7.11316 7.84538 8.29970 9.08440 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002234 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.788353 B =12529.841404 C =12836.653461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.162 3.838 3 H 0.017 0.983 4 C -0.120 4.120 5 C 0.164 3.836 6 H 0.068 0.932 7 N -0.700 5.700 8 C 0.602 3.398 9 O -0.571 6.571 10 C -0.121 4.121 11 C 0.106 3.894 12 N -0.337 5.337 13 C 0.158 3.842 14 C -0.158 4.158 15 C -0.147 4.147 16 C -0.162 4.162 17 N -0.080 5.080 18 N -0.226 5.226 19 C -0.127 4.127 20 C 0.164 3.836 21 N -0.611 5.611 22 C -0.339 4.339 23 H 0.065 0.935 24 C -0.083 4.083 25 N -0.950 5.950 26 Si 1.112 2.888 27 H -0.297 1.297 28 H -0.282 1.282 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.226 0.774 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.046 0.954 49 H -0.001 1.001 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.658 -4.884 27.132 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 H 0.034 0.966 4 C -0.159 4.159 5 C 0.059 3.941 6 H 0.086 0.914 7 N -0.349 5.349 8 C 0.388 3.612 9 O -0.450 6.450 10 C -0.261 4.261 11 C -0.052 4.052 12 N -0.123 5.123 13 C 0.078 3.922 14 C -0.216 4.216 15 C -0.205 4.205 16 C -0.220 4.220 17 N -0.060 5.060 18 N -0.099 5.099 19 C -0.167 4.167 20 C 0.037 3.963 21 N -0.336 5.336 22 C -0.469 4.469 23 H 0.082 0.918 24 C -0.279 4.279 25 N -0.592 5.592 26 Si 0.937 3.063 27 H -0.223 1.223 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.134 0.866 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.017 0.983 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.299 -5.929 26.031 29.827 hybrid contribution 0.392 1.187 0.652 1.410 sum 13.691 -4.742 26.683 30.363 Atomic orbital electron populations 1.21682 0.93961 1.01520 1.00990 1.20621 0.94732 0.92880 0.86156 0.96580 1.22192 0.92594 1.02132 0.98975 1.20720 0.94939 0.95452 0.82947 0.91428 1.45872 1.13037 1.48037 1.27968 1.17055 0.81918 0.80036 0.82211 1.90793 1.57333 1.39190 1.57657 1.21358 0.94489 1.08060 1.02218 1.23597 0.99026 0.94822 0.87740 1.51187 1.12479 1.29782 1.18893 1.21616 0.81519 0.99582 0.89521 1.22313 1.04388 0.95026 0.99864 1.22025 1.04397 0.94673 0.99389 1.22357 0.95244 1.03377 1.01018 1.81862 0.87922 1.18824 1.17397 1.74617 1.25949 1.08237 1.01096 1.22162 0.99490 0.99464 0.95595 1.20578 0.84432 0.95654 0.95630 1.44479 1.02395 1.66111 1.20588 1.20216 0.96305 1.41707 0.88657 0.91755 1.27151 1.00657 1.02098 0.97987 1.70894 1.27688 1.22715 1.37950 0.82887 0.74854 0.74751 0.73785 1.22339 1.20814 1.19963 0.92981 0.90428 0.94256 0.89239 0.91096 0.74999 0.75723 0.92520 0.86745 0.91174 0.92481 0.87088 0.91911 0.90547 0.86587 0.92228 0.92846 0.92305 0.93554 0.98264 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 7.94 71.98 0.57 -3.98 16 2 C 0.16 6.65 3.50 44.98 0.16 6.81 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.12 -3.97 4.84 30.67 0.15 -3.82 16 5 C 0.16 5.82 2.42 45.02 0.11 5.93 16 6 H 0.07 2.65 7.58 -2.39 -0.02 2.64 16 7 N -0.70 -21.38 5.07 -445.58 -2.26 -23.64 16 8 C 0.60 19.03 7.78 86.69 0.67 19.71 16 9 O -0.57 -21.24 16.53 -4.01 -0.07 -21.31 16 10 C -0.12 -3.20 6.99 40.82 0.29 -2.91 16 11 C 0.11 2.06 10.43 83.85 0.87 2.93 16 12 N -0.34 -5.77 3.44 -306.90 -1.06 -6.82 16 13 C 0.16 1.38 1.25 3.60 0.00 1.38 16 14 C -0.16 -0.87 8.74 71.98 0.63 -0.24 16 15 C -0.15 -1.16 8.11 71.98 0.58 -0.57 16 16 C -0.16 -0.80 8.30 71.98 0.60 -0.20 16 17 N -0.08 -1.91 12.91 37.02 0.48 -1.43 16 18 N -0.23 -6.10 12.04 -49.99 -0.60 -6.71 16 19 C -0.13 -5.22 5.63 30.53 0.17 -5.05 16 20 C 0.16 8.19 4.66 86.22 0.40 8.59 16 21 N -0.61 -30.75 2.84 -676.06 -1.92 -32.67 16 22 C -0.34 -18.70 8.50 84.03 0.71 -17.99 16 23 H 0.06 3.46 6.27 -2.91 -0.02 3.44 16 24 C -0.08 -4.80 4.70 84.86 0.40 -4.41 16 25 N -0.95 -59.47 12.46 21.65 0.27 -59.20 16 26 Si 1.11 51.88 29.98 68.60 2.06 53.94 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 30 H 0.05 1.92 7.44 -2.38 -0.02 1.91 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.60 7.62 -2.39 -0.02 1.58 16 33 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.41 11.18 8.29 -92.71 -0.77 10.41 16 36 H 0.23 3.02 7.62 -2.91 -0.02 3.00 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 43 H 0.08 0.33 7.43 -2.39 -0.02 0.31 16 44 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.05 2.61 6.39 -2.39 -0.02 2.60 16 49 H 0.00 -0.03 7.85 -2.39 -0.02 -0.05 16 50 H 0.25 16.20 6.68 -92.71 -0.62 15.58 16 Total: -1.00 -75.35 397.45 3.54 -71.81 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.31 Total: 19.86 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 6.32 Total: 6.18 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -5.09 Total: -130.48 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.06 Total: 53.94 kcal Total: -75.35 3.54 -71.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947380085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.880 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.36 seconds