Wall clock time and date at job start Tue Mar 31 2020 23:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70057 * 2 1 4 4 C 1.53190 * 109.58514 * 239.64661 * 2 1 3 5 5 C 1.53040 * 109.31348 * 185.57871 * 4 2 1 6 6 H 1.08996 * 109.44703 * 301.35068 * 5 4 2 7 7 N 1.46495 * 109.46291 * 181.38408 * 5 4 2 8 8 C 1.34778 * 120.00417 * 154.92960 * 7 5 4 9 9 O 1.21601 * 119.99645 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.00375 * 179.97438 * 8 7 5 11 11 C 1.36595 * 125.76855 * 179.71159 * 10 8 7 12 12 N 1.34819 * 106.83501 * 180.26484 * 11 10 8 13 13 C 1.46502 * 126.59015 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47226 * 75.00451 * 13 12 11 15 15 C 1.53002 * 109.46950 * 194.99956 * 13 12 11 16 16 C 1.52997 * 109.47223 * 315.00093 * 13 12 11 17 17 N 1.40206 * 106.81246 * 0.02562 * 12 11 10 18 18 N 1.28763 * 108.36974 * 359.97438 * 17 12 11 19 19 C 1.53036 * 109.53885 * 61.35997 * 5 4 2 20 20 C 1.53190 * 109.31778 * 298.63855 * 19 5 4 21 21 N 1.46919 * 109.58866 * 120.35593 * 2 1 3 22 22 C 1.36946 * 120.62910 * 353.37679 * 21 2 1 23 23 H 1.08001 * 120.00157 * 41.23579 * 22 21 2 24 24 C 1.38819 * 119.99701 * 221.24176 * 22 21 2 25 25 N 1.31618 * 119.99539 * 214.82796 * 24 22 21 26 26 Si 1.86798 * 119.99999 * 34.82744 * 24 22 21 27 27 H 1.48507 * 109.47086 * 84.62856 * 26 24 22 28 28 H 1.48500 * 109.47167 * 204.62817 * 26 24 22 29 29 H 1.48504 * 109.47501 * 324.62668 * 26 24 22 30 30 H 1.08993 * 109.47129 * 299.64713 * 1 2 3 31 31 H 1.08997 * 109.47145 * 59.64279 * 1 2 3 32 32 H 1.08993 * 109.47117 * 179.64286 * 1 2 3 33 33 H 1.09004 * 109.49961 * 65.62691 * 4 2 1 34 34 H 1.09004 * 109.50044 * 305.52940 * 4 2 1 35 35 H 0.96998 * 120.00160 * 334.93020 * 7 5 4 36 36 H 1.07997 * 126.58464 * 0.27644 * 11 10 8 37 37 H 1.08997 * 109.47136 * 59.99485 * 14 13 12 38 38 H 1.08994 * 109.47385 * 179.97438 * 14 13 12 39 39 H 1.09009 * 109.46995 * 299.99966 * 14 13 12 40 40 H 1.09001 * 109.46576 * 60.00558 * 15 13 12 41 41 H 1.09001 * 109.47199 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.47185 * 300.00376 * 15 13 12 43 43 H 1.09007 * 109.47246 * 60.00480 * 16 13 12 44 44 H 1.09003 * 109.47101 * 180.02562 * 16 13 12 45 45 H 1.08992 * 109.47593 * 300.00292 * 16 13 12 46 46 H 1.09002 * 109.49777 * 58.59135 * 19 5 4 47 47 H 1.09000 * 109.49840 * 178.65159 * 19 5 4 48 48 H 1.08997 * 109.58854 * 174.41943 * 20 19 5 49 49 H 1.09003 * 109.58519 * 294.70531 * 20 19 5 50 50 H 0.96997 * 119.99120 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 1 4.0059 0.1474 -1.0993 7 7 4.0652 -1.5157 -2.3754 8 6 5.3289 -1.3011 -2.7917 9 8 6.0559 -0.5528 -2.1670 10 6 5.8303 -1.9740 -4.0050 11 6 7.0825 -1.8381 -4.5337 12 7 7.1268 -2.6125 -5.6364 13 6 8.2706 -2.7879 -6.5349 14 6 9.3113 -3.6882 -5.8660 15 6 7.8000 -3.4344 -7.8393 16 6 8.8950 -1.4244 -6.8377 17 7 5.8680 -3.2177 -5.7578 18 7 5.1302 -2.8194 -4.7806 19 6 3.9569 -1.6656 0.0634 20 6 3.4651 -0.9470 1.3237 21 7 2.0226 -0.6995 1.1944 22 6 1.1537 -1.1128 2.1689 23 1 0.2058 -1.5527 1.8962 24 6 1.4913 -0.9660 3.5074 25 7 1.1097 -1.8696 4.3851 26 14 2.4871 0.5136 4.0627 27 1 1.5757 1.6607 4.3059 28 1 3.2101 0.1814 5.3166 29 1 3.4672 0.8752 3.0073 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.7660 -0.1667 -2.1369 34 1 1.6029 -1.7253 -1.2914 35 1 3.4852 -2.1123 -2.8739 36 1 7.8833 -1.2277 -4.1432 37 1 8.8664 -4.6596 -5.6503 38 1 10.1620 -3.8191 -6.5347 39 1 9.6466 -3.2277 -4.9366 40 1 7.0586 -2.7930 -8.3158 41 1 8.6509 -3.5645 -8.5080 42 1 7.3551 -4.4058 -7.6235 43 1 9.2304 -0.9638 -5.9084 44 1 9.7457 -1.5548 -7.5066 45 1 8.1537 -0.7830 -7.3142 46 1 3.4983 -2.6528 0.0052 47 1 5.0411 -1.7700 0.1033 48 1 3.6518 -1.5718 2.1971 49 1 3.9922 0.0009 1.4330 50 1 1.3460 -1.7672 5.3203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947380087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:22 Heat of formation + Delta-G solvation = 73.519490 kcal Electronic energy + Delta-G solvation = -29388.660431 eV Core-core repulsion = 25453.520587 eV Total energy + Delta-G solvation = -3935.139844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.48134 -39.57387 -37.92179 -37.57139 -34.61786 -32.46423 -32.21345 -31.68041 -31.00920 -29.80528 -28.15526 -28.07246 -26.48210 -24.91909 -23.99333 -23.38342 -22.22904 -21.08555 -20.59541 -19.96756 -19.24458 -17.82445 -16.65669 -16.35979 -16.23038 -15.94416 -15.07160 -14.94539 -14.84602 -14.75861 -14.43523 -14.19706 -13.96079 -13.50533 -13.29184 -13.20420 -13.11594 -12.96524 -12.89042 -12.55574 -12.51073 -12.41383 -12.03404 -11.99181 -11.71809 -11.65209 -11.38169 -11.22110 -10.95075 -10.90198 -10.59095 -10.54848 -10.39318 -10.20658 -10.07629 -9.93283 -9.74139 -9.47641 -9.39604 -8.70478 -8.30332 -6.65606 -6.03246 -3.33204 0.94655 1.62956 1.68293 3.25567 3.35265 3.46398 3.56373 3.62958 3.74448 3.99801 4.03962 4.11900 4.52836 4.63583 4.68840 4.78776 4.84246 4.95399 4.96706 4.97478 5.01024 5.11974 5.15168 5.27305 5.32179 5.33795 5.47403 5.50891 5.54553 5.71710 5.73841 5.90237 6.10935 6.15842 6.18376 6.26758 6.33371 6.38889 6.51283 6.55056 6.63217 6.80402 6.93047 6.97145 7.09161 7.18262 7.59014 7.85701 8.08879 8.31907 8.48057 9.06092 9.77824 10.27198 11.12274 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.002309 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.502014 B =12125.723702 C =12526.162168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.083 0.917 7 N -0.707 5.707 8 C 0.601 3.399 9 O -0.542 6.542 10 C -0.097 4.097 11 C 0.091 3.909 12 N -0.352 5.352 13 C 0.169 3.831 14 C -0.162 4.162 15 C -0.149 4.149 16 C -0.163 4.163 17 N -0.065 5.065 18 N -0.207 5.207 19 C -0.142 4.142 20 C 0.147 3.853 21 N -0.595 5.595 22 C -0.273 4.273 23 H 0.077 0.923 24 C 0.049 3.951 25 N -0.881 5.881 26 Si 0.842 3.158 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.259 1.259 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.405 0.595 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.026 0.974 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.352 -1.298 -25.311 30.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.062 3.938 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.101 0.899 7 N -0.356 5.356 8 C 0.384 3.616 9 O -0.418 6.418 10 C -0.237 4.237 11 C -0.066 4.066 12 N -0.139 5.139 13 C 0.087 3.913 14 C -0.220 4.220 15 C -0.206 4.206 16 C -0.221 4.221 17 N -0.044 5.044 18 N -0.080 5.080 19 C -0.183 4.183 20 C 0.021 3.979 21 N -0.320 5.320 22 C -0.401 4.401 23 H 0.094 0.906 24 C -0.153 4.153 25 N -0.520 5.520 26 Si 0.668 3.332 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.184 1.184 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.239 0.761 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.044 0.956 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.979 -1.795 -25.521 30.164 hybrid contribution 1.065 1.169 0.777 1.762 sum 17.044 -0.626 -24.744 30.053 Atomic orbital electron populations 1.21750 0.95095 1.01858 1.00334 1.20484 0.93708 0.93275 0.86363 0.95393 1.22364 0.93337 1.02125 0.99597 1.21057 0.94579 0.96587 0.82995 0.89870 1.46080 1.12737 1.48041 1.28698 1.16785 0.82363 0.80570 0.81849 1.90809 1.56724 1.37782 1.56529 1.21594 0.93237 1.06638 1.02219 1.23242 0.99625 0.95541 0.88167 1.50818 1.12607 1.31338 1.19103 1.21092 0.82511 0.97944 0.89758 1.22295 0.98097 0.99917 1.01682 1.21994 1.02461 1.02210 0.93962 1.22304 1.01956 0.94345 1.03536 1.81943 0.86712 1.18294 1.17501 1.74651 1.24990 1.07875 1.00497 1.22440 0.99932 1.00003 0.95889 1.21255 0.84733 0.96837 0.95079 1.44418 1.02313 1.65284 1.19968 1.18577 1.02283 1.34971 0.84292 0.90596 1.25598 0.96833 0.96948 0.95944 1.70087 1.47241 1.31390 1.03240 0.87382 0.80794 0.86883 0.78098 1.21562 1.22474 1.18358 0.91685 0.94294 0.92454 0.92314 0.91292 0.76068 0.78303 0.91162 0.89618 0.91296 0.91217 0.90135 0.90582 0.91071 0.89376 0.91118 0.91737 0.92554 0.91279 0.95577 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.07 37.16 0.30 -2.15 16 2 C 0.17 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.23 4.84 -26.61 -0.13 -2.36 16 5 C 0.15 2.57 2.42 -67.89 -0.16 2.41 16 6 H 0.08 1.53 7.57 -51.93 -0.39 1.14 16 7 N -0.71 -10.60 5.07 -54.81 -0.28 -10.88 16 8 C 0.60 9.27 7.78 -12.47 -0.10 9.17 16 9 O -0.54 -9.71 16.53 5.28 0.09 -9.63 16 10 C -0.10 -1.28 6.99 -83.55 -0.58 -1.87 16 11 C 0.09 0.92 10.43 -16.83 -0.18 0.74 16 12 N -0.35 -3.19 3.44 -48.35 -0.17 -3.36 16 13 C 0.17 0.91 1.25 -131.82 -0.16 0.74 16 14 C -0.16 -0.68 8.74 37.16 0.32 -0.36 16 15 C -0.15 -0.70 8.11 37.16 0.30 -0.40 16 16 C -0.16 -0.58 8.30 37.16 0.31 -0.27 16 17 N -0.06 -0.78 12.91 60.35 0.78 0.00 16 18 N -0.21 -2.80 12.04 32.85 0.40 -2.40 16 19 C -0.14 -2.70 5.65 -26.61 -0.15 -2.85 16 20 C 0.15 3.28 4.59 -3.71 -0.02 3.26 16 21 N -0.60 -13.95 2.47 -164.78 -0.41 -14.36 16 22 C -0.27 -7.41 8.42 -15.05 -0.13 -7.53 16 23 H 0.08 2.19 6.83 -52.49 -0.36 1.84 16 24 C 0.05 1.40 4.82 -17.43 -0.08 1.32 16 25 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 26 Si 0.84 21.58 27.40 -169.99 -4.66 16.92 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 29 H -0.26 -6.43 5.24 56.52 0.30 -6.13 16 30 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.49 8.29 -40.82 -0.34 5.16 16 36 H 0.20 1.49 7.63 -52.49 -0.40 1.09 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.45 8.06 -51.93 -0.42 0.03 16 43 H 0.07 0.24 7.44 -51.93 -0.39 -0.15 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.66 7.02 -51.93 -0.36 1.30 16 49 H 0.03 0.60 6.70 -51.93 -0.35 0.25 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -33.04 395.99 -6.73 -39.77 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.53 Total: 0.72 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.69 Total: 2.92 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.10 Total: -56.67 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.66 Total: 16.92 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.04 -6.73 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947380087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.285 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds