Wall clock time and date at job start Tue Mar 31 2020 23:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70057 * 2 1 4 4 C 1.53190 * 109.58514 * 239.64661 * 2 1 3 5 5 C 1.53040 * 109.31348 * 185.57871 * 4 2 1 6 6 H 1.08996 * 109.44703 * 301.35068 * 5 4 2 7 7 N 1.46495 * 109.46291 * 181.38408 * 5 4 2 8 8 C 1.34778 * 120.00417 * 154.92960 * 7 5 4 9 9 O 1.21601 * 119.99645 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.00375 * 179.97438 * 8 7 5 11 11 C 1.36595 * 125.76855 * 179.71159 * 10 8 7 12 12 N 1.34819 * 106.83501 * 180.26484 * 11 10 8 13 13 C 1.46502 * 126.59015 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47226 * 75.00451 * 13 12 11 15 15 C 1.53002 * 109.46950 * 194.99956 * 13 12 11 16 16 C 1.52997 * 109.47223 * 315.00093 * 13 12 11 17 17 N 1.40206 * 106.81246 * 0.02562 * 12 11 10 18 18 N 1.28763 * 108.36974 * 359.97438 * 17 12 11 19 19 C 1.53036 * 109.53885 * 61.35997 * 5 4 2 20 20 C 1.53190 * 109.31778 * 298.63855 * 19 5 4 21 21 N 1.46919 * 109.58866 * 120.35593 * 2 1 3 22 22 C 1.36946 * 120.62910 * 353.37679 * 21 2 1 23 23 H 1.08001 * 120.00157 * 41.23579 * 22 21 2 24 24 C 1.38819 * 119.99701 * 221.24176 * 22 21 2 25 25 N 1.31618 * 119.99539 * 214.82796 * 24 22 21 26 26 Si 1.86798 * 119.99999 * 34.82744 * 24 22 21 27 27 H 1.48507 * 109.47086 * 84.62856 * 26 24 22 28 28 H 1.48500 * 109.47167 * 204.62817 * 26 24 22 29 29 H 1.48504 * 109.47501 * 324.62668 * 26 24 22 30 30 H 1.08993 * 109.47129 * 299.64713 * 1 2 3 31 31 H 1.08997 * 109.47145 * 59.64279 * 1 2 3 32 32 H 1.08993 * 109.47117 * 179.64286 * 1 2 3 33 33 H 1.09004 * 109.49961 * 65.62691 * 4 2 1 34 34 H 1.09004 * 109.50044 * 305.52940 * 4 2 1 35 35 H 0.96998 * 120.00160 * 334.93020 * 7 5 4 36 36 H 1.07997 * 126.58464 * 0.27644 * 11 10 8 37 37 H 1.08997 * 109.47136 * 59.99485 * 14 13 12 38 38 H 1.08994 * 109.47385 * 179.97438 * 14 13 12 39 39 H 1.09009 * 109.46995 * 299.99966 * 14 13 12 40 40 H 1.09001 * 109.46576 * 60.00558 * 15 13 12 41 41 H 1.09001 * 109.47199 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.47185 * 300.00376 * 15 13 12 43 43 H 1.09007 * 109.47246 * 60.00480 * 16 13 12 44 44 H 1.09003 * 109.47101 * 180.02562 * 16 13 12 45 45 H 1.08992 * 109.47593 * 300.00292 * 16 13 12 46 46 H 1.09002 * 109.49777 * 58.59135 * 19 5 4 47 47 H 1.09000 * 109.49840 * 178.65159 * 19 5 4 48 48 H 1.08997 * 109.58854 * 174.41943 * 20 19 5 49 49 H 1.09003 * 109.58519 * 294.70531 * 20 19 5 50 50 H 0.96997 * 119.99120 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 1 4.0059 0.1474 -1.0993 7 7 4.0652 -1.5157 -2.3754 8 6 5.3289 -1.3011 -2.7917 9 8 6.0559 -0.5528 -2.1670 10 6 5.8303 -1.9740 -4.0050 11 6 7.0825 -1.8381 -4.5337 12 7 7.1268 -2.6125 -5.6364 13 6 8.2706 -2.7879 -6.5349 14 6 9.3113 -3.6882 -5.8660 15 6 7.8000 -3.4344 -7.8393 16 6 8.8950 -1.4244 -6.8377 17 7 5.8680 -3.2177 -5.7578 18 7 5.1302 -2.8194 -4.7806 19 6 3.9569 -1.6656 0.0634 20 6 3.4651 -0.9470 1.3237 21 7 2.0226 -0.6995 1.1944 22 6 1.1537 -1.1128 2.1689 23 1 0.2058 -1.5527 1.8962 24 6 1.4913 -0.9660 3.5074 25 7 1.1097 -1.8696 4.3851 26 14 2.4871 0.5136 4.0627 27 1 1.5757 1.6607 4.3059 28 1 3.2101 0.1814 5.3166 29 1 3.4672 0.8752 3.0073 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0064 33 1 1.7660 -0.1667 -2.1369 34 1 1.6029 -1.7253 -1.2914 35 1 3.4852 -2.1123 -2.8739 36 1 7.8833 -1.2277 -4.1432 37 1 8.8664 -4.6596 -5.6503 38 1 10.1620 -3.8191 -6.5347 39 1 9.6466 -3.2277 -4.9366 40 1 7.0586 -2.7930 -8.3158 41 1 8.6509 -3.5645 -8.5080 42 1 7.3551 -4.4058 -7.6235 43 1 9.2304 -0.9638 -5.9084 44 1 9.7457 -1.5548 -7.5066 45 1 8.1537 -0.7830 -7.3142 46 1 3.4983 -2.6528 0.0052 47 1 5.0411 -1.7700 0.1033 48 1 3.6518 -1.5718 2.1971 49 1 3.9922 0.0009 1.4330 50 1 1.3460 -1.7672 5.3203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947380087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:21 Heat of formation + Delta-G solvation = 51.054899 kcal Electronic energy + Delta-G solvation = -29389.634569 eV Core-core repulsion = 25453.520587 eV Total energy + Delta-G solvation = -3936.113982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -43.32495 -40.86571 -39.27821 -38.29085 -36.12384 -34.25853 -33.26983 -33.00232 -32.31961 -31.20573 -28.49292 -28.42643 -28.03142 -26.58320 -24.90191 -24.58356 -23.84870 -22.24277 -21.69246 -21.30131 -20.61541 -18.73989 -18.26818 -17.36490 -17.28925 -17.11882 -16.79384 -16.27465 -15.87739 -15.72291 -15.43094 -15.18741 -15.05234 -14.99321 -14.77075 -14.57501 -14.40718 -13.93908 -13.64134 -13.39274 -13.32509 -13.31982 -13.18745 -12.78379 -12.76875 -12.67991 -12.54438 -12.46980 -12.42793 -12.35586 -12.08079 -11.96902 -11.90522 -11.63250 -11.58336 -11.39723 -11.28344 -11.07623 -10.45967 -10.42122 -10.00671 -8.61597 -8.22581 -5.48042 0.14292 0.61035 1.02658 1.38909 1.45870 1.54850 2.09665 2.23393 2.50368 2.96880 3.15456 3.24127 3.43763 3.64211 3.70565 3.76651 3.85065 3.92741 4.01568 4.18929 4.25069 4.32966 4.50185 4.56130 4.56858 4.59695 4.65123 4.67099 4.69619 4.74596 4.78731 4.79092 4.81928 4.94228 5.03698 5.07205 5.08473 5.11425 5.14260 5.18678 5.26450 5.29613 5.48763 5.52547 5.53872 5.62982 5.97882 6.31352 6.44570 6.90896 7.05129 7.14248 7.69837 8.20981 8.97243 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.002309 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.502014 B =12125.723702 C =12526.162168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.159 3.841 3 H 0.035 0.965 4 C -0.122 4.122 5 C 0.161 3.839 6 H 0.075 0.925 7 N -0.701 5.701 8 C 0.603 3.397 9 O -0.569 6.569 10 C -0.121 4.121 11 C 0.106 3.894 12 N -0.338 5.338 13 C 0.158 3.842 14 C -0.159 4.159 15 C -0.147 4.147 16 C -0.161 4.161 17 N -0.082 5.082 18 N -0.226 5.226 19 C -0.130 4.130 20 C 0.147 3.853 21 N -0.607 5.607 22 C -0.253 4.253 23 H 0.051 0.949 24 C -0.002 4.002 25 N -0.927 5.927 26 Si 0.897 3.103 27 H -0.291 1.291 28 H -0.303 1.303 29 H -0.247 1.247 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.227 0.773 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.026 0.974 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.586 -0.289 -28.348 33.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.053 0.947 4 C -0.161 4.161 5 C 0.057 3.943 6 H 0.094 0.906 7 N -0.350 5.350 8 C 0.389 3.611 9 O -0.448 6.448 10 C -0.261 4.261 11 C -0.052 4.052 12 N -0.124 5.124 13 C 0.078 3.922 14 C -0.217 4.217 15 C -0.205 4.205 16 C -0.219 4.219 17 N -0.062 5.062 18 N -0.100 5.100 19 C -0.170 4.170 20 C 0.021 3.979 21 N -0.332 5.332 22 C -0.383 4.383 23 H 0.068 0.932 24 C -0.201 4.201 25 N -0.569 5.569 26 Si 0.725 3.275 27 H -0.218 1.218 28 H -0.231 1.231 29 H -0.171 1.171 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.243 0.757 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.133 0.867 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.044 0.956 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.226 -0.789 -28.633 33.950 hybrid contribution 0.437 0.801 1.563 1.810 sum 18.662 0.012 -27.070 32.879 Atomic orbital electron populations 1.21683 0.94258 1.01289 1.01147 1.20747 0.94539 0.93559 0.85778 0.94708 1.22201 0.92684 1.02107 0.99106 1.20786 0.94879 0.95810 0.82865 0.90645 1.45896 1.13029 1.48056 1.28003 1.17011 0.81947 0.80030 0.82149 1.90788 1.57332 1.39079 1.57615 1.21408 0.94575 1.07929 1.02226 1.23611 0.99118 0.94829 0.87672 1.51185 1.12506 1.29790 1.18923 1.21599 0.81575 0.99636 0.89400 1.22322 0.98374 0.98647 1.02377 1.22023 1.03347 1.00994 0.94120 1.22346 1.02424 0.92718 1.04384 1.81870 0.88007 1.18956 1.17357 1.74621 1.25911 1.08412 1.01016 1.22252 0.99833 0.99495 0.95462 1.21183 0.84285 0.96635 0.95819 1.44558 1.02288 1.66003 1.20351 1.18491 1.01580 1.33162 0.85037 0.93196 1.26073 0.98878 0.98801 0.96307 1.70168 1.50231 1.33075 1.03468 0.86486 0.79670 0.83737 0.77656 1.21838 1.23073 1.17068 0.93957 0.90332 0.93753 0.89115 0.91465 0.75089 0.75673 0.92726 0.86784 0.91179 0.92297 0.87159 0.92085 0.90504 0.86692 0.92012 0.92407 0.92304 0.93790 0.95624 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.07 71.98 0.58 -3.91 16 2 C 0.16 6.01 3.50 44.98 0.16 6.16 16 3 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.12 -3.75 4.84 30.67 0.15 -3.60 16 5 C 0.16 5.21 2.42 45.02 0.11 5.32 16 6 H 0.08 2.63 7.57 -2.39 -0.02 2.61 16 7 N -0.70 -19.97 5.07 -445.59 -2.26 -22.23 16 8 C 0.60 17.83 7.78 86.69 0.67 18.50 16 9 O -0.57 -19.66 16.53 -4.04 -0.07 -19.73 16 10 C -0.12 -3.04 6.99 40.82 0.29 -2.76 16 11 C 0.11 1.93 10.43 83.85 0.87 2.80 16 12 N -0.34 -5.52 3.44 -306.90 -1.06 -6.58 16 13 C 0.16 1.29 1.25 3.60 0.00 1.29 16 14 C -0.16 -0.89 8.74 71.98 0.63 -0.26 16 15 C -0.15 -1.08 8.11 71.98 0.58 -0.50 16 16 C -0.16 -0.61 8.30 71.98 0.60 -0.01 16 17 N -0.08 -1.91 12.91 37.02 0.48 -1.43 16 18 N -0.23 -5.94 12.04 -49.99 -0.60 -6.54 16 19 C -0.13 -4.86 5.65 30.67 0.17 -4.69 16 20 C 0.15 6.51 4.59 86.36 0.40 6.91 16 21 N -0.61 -28.32 2.47 -675.23 -1.67 -29.98 16 22 C -0.25 -13.98 8.42 84.03 0.71 -13.28 16 23 H 0.05 2.99 6.83 -2.91 -0.02 2.97 16 24 C 0.00 -0.11 4.82 84.86 0.41 0.30 16 25 N -0.93 -57.44 13.97 21.65 0.30 -57.14 16 26 Si 0.90 45.46 27.40 68.60 1.88 47.34 16 27 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 28 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 29 H -0.25 -11.84 5.24 99.48 0.52 -11.32 16 30 H 0.04 1.67 7.68 -2.39 -0.02 1.66 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.67 7.42 -2.39 -0.02 1.65 16 33 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.41 10.58 8.29 -92.71 -0.77 9.81 16 36 H 0.23 2.72 7.63 -2.91 -0.02 2.70 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.06 0.65 8.06 -2.39 -0.02 0.63 16 43 H 0.08 0.23 7.44 -2.38 -0.02 0.22 16 44 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 2.15 7.02 -2.39 -0.02 2.13 16 49 H 0.03 1.15 6.70 -2.39 -0.02 1.13 16 50 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.46 395.99 3.32 -70.14 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.02 Total: 13.87 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.33 Total: 12.28 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -4.80 Total: -123.90 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.07 Total: -19.73 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -73.46 3.32 -70.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947380087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.198 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds