Wall clock time and date at job start Tue Mar 31 2020 23:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.70140 * 2 1 4 4 C 1.53195 * 109.58968 * 239.64935 * 2 1 3 5 5 C 1.53041 * 109.30872 * 294.84854 * 4 2 1 6 6 H 1.09007 * 109.46004 * 58.64050 * 5 4 2 7 7 N 1.46499 * 109.45973 * 178.60926 * 5 4 2 8 8 C 1.34771 * 120.00371 * 204.99653 * 7 5 4 9 9 O 1.21558 * 119.99922 * 0.02562 * 8 7 5 10 10 C 1.47876 * 120.00283 * 180.02562 * 8 7 5 11 11 N 1.34549 * 126.04265 * 0.27658 * 10 8 7 12 12 C 1.30877 * 107.26465 * 180.15063 * 11 10 8 13 13 N 1.34587 * 107.62486 * 359.62392 * 12 11 10 14 14 C 1.46496 * 125.74654 * 180.22395 * 13 12 11 15 15 C 1.52998 * 109.47223 * 74.99779 * 14 13 12 16 16 C 1.52998 * 109.46999 * 194.99255 * 14 13 12 17 17 C 1.52996 * 109.47213 * 314.99265 * 14 13 12 18 18 N 1.28849 * 108.50069 * 0.23472 * 13 12 11 19 19 C 1.53039 * 109.53903 * 298.63287 * 5 4 2 20 20 C 1.53195 * 109.31156 * 61.36502 * 19 5 4 21 21 N 1.46920 * 109.58728 * 120.35786 * 2 1 3 22 22 C 1.36936 * 120.63314 * 246.20047 * 21 2 1 23 23 H 1.08003 * 119.99856 * 331.83078 * 22 21 2 24 24 C 1.38810 * 120.00247 * 151.82236 * 22 21 2 25 25 N 1.31623 * 119.99977 * 343.06689 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.06641 * 24 22 21 27 27 H 1.48503 * 109.47197 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47134 * 120.00157 * 26 24 22 29 29 H 1.48493 * 109.47345 * 239.99996 * 26 24 22 30 30 H 1.08994 * 109.46937 * 180.35131 * 1 2 3 31 31 H 1.09004 * 109.47059 * 300.35647 * 1 2 3 32 32 H 1.09008 * 109.47145 * 60.35200 * 1 2 3 33 33 H 1.08993 * 109.50069 * 174.89547 * 4 2 1 34 34 H 1.09001 * 109.49484 * 54.79454 * 4 2 1 35 35 H 0.97003 * 119.99852 * 25.00565 * 7 5 4 36 36 H 1.08002 * 126.18616 * 179.88712 * 12 11 10 37 37 H 1.09005 * 109.47502 * 59.99824 * 15 14 13 38 38 H 1.09002 * 109.47422 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47098 * 299.99687 * 15 14 13 40 40 H 1.09008 * 109.47011 * 59.99767 * 16 14 13 41 41 H 1.08999 * 109.47312 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.47443 * 300.00323 * 16 14 13 43 43 H 1.09002 * 109.46924 * 60.00426 * 17 14 13 44 44 H 1.09002 * 109.46809 * 180.02562 * 17 14 13 45 45 H 1.08996 * 109.47292 * 300.00311 * 17 14 13 46 46 H 1.09004 * 109.49850 * 181.31639 * 19 5 4 47 47 H 1.09000 * 109.49682 * 301.41843 * 19 5 4 48 48 H 1.09001 * 109.58653 * 185.57926 * 20 19 5 49 49 H 1.08998 * 109.69893 * 65.22656 * 20 19 5 50 50 H 0.96995 * 119.99903 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7293 -1.2455 5 6 1.6415 -2.2040 -1.1703 6 1 0.5565 -2.2814 -1.0992 7 7 2.1023 -2.8976 -2.3755 8 6 1.4751 -4.0158 -2.7910 9 8 0.5267 -4.4486 -2.1658 10 6 1.9406 -4.7162 -4.0073 11 7 2.9755 -4.3494 -4.7850 12 6 3.0593 -5.2218 -5.7570 13 7 2.0830 -6.1300 -5.5747 14 6 1.8190 -7.2868 -6.4339 15 6 2.8754 -8.3636 -6.1785 16 6 0.4313 -7.8493 -6.1196 17 6 1.8743 -6.8558 -7.9008 18 7 1.4196 -5.8106 -4.5173 19 6 2.2801 -2.8464 0.0633 20 6 1.7692 -2.1410 1.3236 21 7 2.0226 -0.6996 1.1944 22 6 2.7044 -0.0210 2.1689 23 1 3.2758 0.8596 1.9148 24 6 2.6611 -0.4647 3.4835 25 7 1.7268 -1.3110 3.8620 26 14 3.9288 0.1393 4.7154 27 1 4.8634 1.0780 4.0441 28 1 3.2414 0.8388 5.8305 29 1 4.6891 -1.0183 5.2512 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5084 -0.8932 33 1 3.1297 -0.6502 -1.2914 34 1 1.6075 -0.2783 -2.1368 35 1 2.8590 -2.5521 -2.8746 36 1 3.7838 -5.2164 -6.5579 37 1 2.8360 -8.6707 -5.1333 38 1 2.6787 -9.2245 -6.8174 39 1 3.8641 -7.9629 -6.4023 40 1 -0.3215 -7.0821 -6.3016 41 1 0.2346 -8.7097 -6.7592 42 1 0.3918 -8.1564 -5.0745 43 1 2.8630 -6.4551 -8.1247 44 1 1.6774 -7.7164 -8.5401 45 1 1.1217 -6.0887 -8.0828 46 1 2.0123 -3.9022 0.1035 47 1 3.3640 -2.7473 0.0051 48 1 2.2944 -2.5275 2.1970 49 1 0.6989 -2.3155 1.4340 50 1 1.6968 -1.6214 4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947727629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:33 Heat of formation + Delta-G solvation = 70.470864 kcal Electronic energy + Delta-G solvation = -29550.453053 eV Core-core repulsion = 25615.181010 eV Total energy + Delta-G solvation = -3935.272042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -43.65969 -39.53515 -37.86382 -37.41732 -34.44570 -32.89964 -32.36446 -31.28684 -30.59758 -29.43773 -28.14141 -27.99880 -26.90162 -25.04420 -23.91915 -23.21182 -21.89045 -21.56350 -20.39414 -20.19737 -18.58071 -17.74465 -16.92774 -16.75495 -16.34297 -16.01146 -15.12002 -14.82169 -14.73482 -14.58506 -14.17228 -13.93715 -13.66514 -13.58457 -13.33093 -13.04546 -13.00091 -12.88431 -12.54812 -12.43132 -12.40206 -12.27103 -12.14587 -11.89869 -11.54227 -11.33869 -11.01833 -10.85492 -10.75124 -10.57623 -10.56009 -10.53044 -10.27113 -10.11542 -10.06459 -9.81797 -9.67456 -9.64616 -9.30015 -8.63536 -8.34495 -6.62095 -5.72586 -3.15209 1.35764 1.88374 2.01862 3.20665 3.41470 3.49214 3.51175 3.52434 3.79381 4.02412 4.05786 4.16006 4.48381 4.53895 4.72847 4.79733 4.93554 4.98517 5.06789 5.12586 5.21415 5.32791 5.36757 5.46207 5.46895 5.51460 5.68525 5.71800 5.87208 5.90860 6.10008 6.15752 6.18227 6.33557 6.34331 6.39482 6.51273 6.54690 6.67230 6.73668 6.87392 6.96379 7.02687 7.23157 7.46380 7.66780 7.77478 7.86327 7.99813 8.42972 8.51976 9.27487 9.91035 10.48063 11.35659 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.002263 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.991340 B =12368.120488 C =12576.503913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.087 0.913 7 N -0.702 5.702 8 C 0.610 3.390 9 O -0.520 6.520 10 C 0.144 3.856 11 N -0.484 5.484 12 C 0.186 3.814 13 N -0.294 5.294 14 C 0.167 3.833 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.160 4.160 18 N -0.248 5.248 19 C -0.148 4.148 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.250 4.250 23 H 0.066 0.934 24 C 0.002 3.998 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.404 0.596 36 H 0.220 0.780 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.022 0.978 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -12.503 -26.454 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.105 0.895 7 N -0.353 5.353 8 C 0.391 3.609 9 O -0.393 6.393 10 C -0.136 4.136 11 N -0.209 5.209 12 C -0.110 4.110 13 N -0.091 5.091 14 C 0.085 3.915 15 C -0.218 4.218 16 C -0.207 4.207 17 C -0.218 4.218 18 N -0.087 5.087 19 C -0.188 4.188 20 C 0.048 3.952 21 N -0.307 5.307 22 C -0.380 4.380 23 H 0.084 0.916 24 C -0.196 4.196 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.239 0.761 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.107 0.893 49 H 0.040 0.960 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.307 -12.905 -25.436 28.552 hybrid contribution 1.228 0.215 0.077 1.249 sum 2.535 -12.690 -25.360 28.470 Atomic orbital electron populations 1.22308 0.98697 1.01208 1.00022 1.20443 0.91782 0.95103 0.86455 0.91575 1.22308 1.01364 0.93884 0.99641 1.21190 0.99912 0.91379 0.82688 0.89477 1.46054 1.34489 1.25856 1.28903 1.16326 0.82694 0.80749 0.81134 1.90836 1.27446 1.65560 1.55423 1.23960 0.94979 0.94625 1.00063 1.71288 1.18418 1.26560 1.04643 1.26288 0.95817 0.88174 1.00682 1.47781 1.21784 1.21243 1.18323 1.21153 0.98741 0.82673 0.88955 1.22270 0.97799 0.97844 1.03914 1.22001 0.93092 1.01622 1.03963 1.22259 1.03611 1.03501 0.92410 1.74308 1.19827 1.15315 0.99215 1.22591 1.00308 0.99212 0.96697 1.20743 0.97802 0.82877 0.93809 1.44176 1.63793 1.03463 1.19238 1.19201 1.21679 1.10485 0.86621 0.91635 1.25059 0.97710 1.00050 0.96829 1.70046 1.31742 1.35878 1.16767 0.86254 0.81302 0.78034 0.81351 1.20291 1.21829 1.21651 0.93134 0.92628 0.94478 0.91695 0.92453 0.76104 0.76361 0.91164 0.89588 0.91339 0.91237 0.90333 0.90435 0.91127 0.89329 0.91127 0.92852 0.92514 0.89309 0.95961 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.02 37.16 0.34 -2.88 16 2 C 0.17 3.53 3.29 -67.60 -0.22 3.30 16 3 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 4 C -0.13 -2.31 5.02 -26.61 -0.13 -2.44 16 5 C 0.15 2.80 2.21 -67.89 -0.15 2.65 16 6 H 0.09 1.78 5.94 -51.93 -0.31 1.47 16 7 N -0.70 -11.59 5.07 -54.70 -0.28 -11.87 16 8 C 0.61 11.01 7.80 -12.32 -0.10 10.91 16 9 O -0.52 -11.15 16.75 5.32 0.09 -11.06 16 10 C 0.14 2.25 7.96 -156.36 -1.24 1.01 16 11 N -0.48 -6.32 11.09 -12.36 -0.14 -6.45 16 12 C 0.19 1.71 11.71 -90.47 -1.06 0.65 16 13 N -0.29 -2.90 3.17 -49.84 -0.16 -3.06 16 14 C 0.17 0.98 1.23 -131.83 -0.16 0.82 16 15 C -0.16 -0.69 8.72 37.16 0.32 -0.37 16 16 C -0.15 -0.96 8.04 37.16 0.30 -0.66 16 17 C -0.16 -0.50 8.28 37.16 0.31 -0.19 16 18 N -0.25 -3.58 11.09 32.07 0.36 -3.22 16 19 C -0.15 -3.09 5.65 -26.61 -0.15 -3.24 16 20 C 0.17 4.29 4.88 -3.71 -0.02 4.28 16 21 N -0.59 -14.55 2.70 -164.78 -0.44 -14.99 16 22 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 23 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 24 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 25 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16 26 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 30 H 0.05 1.04 5.72 -51.93 -0.30 0.74 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.40 5.86 8.31 -40.82 -0.34 5.52 16 36 H 0.22 0.92 7.53 -52.49 -0.40 0.52 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 43 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 49 H 0.02 0.59 7.49 -51.93 -0.39 0.20 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -34.51 396.68 -9.50 -44.01 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.30 Total: 2.79 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.20 Total: 6.83 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.04 Total: -65.41 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.51 -9.50 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947727629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.484 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds