Wall clock time and date at job start Tue Mar 31 2020 23:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.70140 * 2 1 4 4 C 1.53195 * 109.58968 * 239.64935 * 2 1 3 5 5 C 1.53041 * 109.30872 * 294.84854 * 4 2 1 6 6 H 1.09007 * 109.46004 * 58.64050 * 5 4 2 7 7 N 1.46499 * 109.45973 * 178.60926 * 5 4 2 8 8 C 1.34771 * 120.00371 * 204.99653 * 7 5 4 9 9 O 1.21558 * 119.99922 * 0.02562 * 8 7 5 10 10 C 1.47876 * 120.00283 * 180.02562 * 8 7 5 11 11 N 1.34549 * 126.04265 * 0.27658 * 10 8 7 12 12 C 1.30877 * 107.26465 * 180.15063 * 11 10 8 13 13 N 1.34587 * 107.62486 * 359.62392 * 12 11 10 14 14 C 1.46496 * 125.74654 * 180.22395 * 13 12 11 15 15 C 1.52998 * 109.47223 * 74.99779 * 14 13 12 16 16 C 1.52998 * 109.46999 * 194.99255 * 14 13 12 17 17 C 1.52996 * 109.47213 * 314.99265 * 14 13 12 18 18 N 1.28849 * 108.50069 * 0.23472 * 13 12 11 19 19 C 1.53039 * 109.53903 * 298.63287 * 5 4 2 20 20 C 1.53195 * 109.31156 * 61.36502 * 19 5 4 21 21 N 1.46920 * 109.58728 * 120.35786 * 2 1 3 22 22 C 1.36936 * 120.63314 * 246.20047 * 21 2 1 23 23 H 1.08003 * 119.99856 * 331.83078 * 22 21 2 24 24 C 1.38810 * 120.00247 * 151.82236 * 22 21 2 25 25 N 1.31623 * 119.99977 * 343.06689 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.06641 * 24 22 21 27 27 H 1.48503 * 109.47197 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47134 * 120.00157 * 26 24 22 29 29 H 1.48493 * 109.47345 * 239.99996 * 26 24 22 30 30 H 1.08994 * 109.46937 * 180.35131 * 1 2 3 31 31 H 1.09004 * 109.47059 * 300.35647 * 1 2 3 32 32 H 1.09008 * 109.47145 * 60.35200 * 1 2 3 33 33 H 1.08993 * 109.50069 * 174.89547 * 4 2 1 34 34 H 1.09001 * 109.49484 * 54.79454 * 4 2 1 35 35 H 0.97003 * 119.99852 * 25.00565 * 7 5 4 36 36 H 1.08002 * 126.18616 * 179.88712 * 12 11 10 37 37 H 1.09005 * 109.47502 * 59.99824 * 15 14 13 38 38 H 1.09002 * 109.47422 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47098 * 299.99687 * 15 14 13 40 40 H 1.09008 * 109.47011 * 59.99767 * 16 14 13 41 41 H 1.08999 * 109.47312 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.47443 * 300.00323 * 16 14 13 43 43 H 1.09002 * 109.46924 * 60.00426 * 17 14 13 44 44 H 1.09002 * 109.46809 * 180.02562 * 17 14 13 45 45 H 1.08996 * 109.47292 * 300.00311 * 17 14 13 46 46 H 1.09004 * 109.49850 * 181.31639 * 19 5 4 47 47 H 1.09000 * 109.49682 * 301.41843 * 19 5 4 48 48 H 1.09001 * 109.58653 * 185.57926 * 20 19 5 49 49 H 1.08998 * 109.69893 * 65.22656 * 20 19 5 50 50 H 0.96995 * 119.99903 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7293 -1.2455 5 6 1.6415 -2.2040 -1.1703 6 1 0.5565 -2.2814 -1.0992 7 7 2.1023 -2.8976 -2.3755 8 6 1.4751 -4.0158 -2.7910 9 8 0.5267 -4.4486 -2.1658 10 6 1.9406 -4.7162 -4.0073 11 7 2.9755 -4.3494 -4.7850 12 6 3.0593 -5.2218 -5.7570 13 7 2.0830 -6.1300 -5.5747 14 6 1.8190 -7.2868 -6.4339 15 6 2.8754 -8.3636 -6.1785 16 6 0.4313 -7.8493 -6.1196 17 6 1.8743 -6.8558 -7.9008 18 7 1.4196 -5.8106 -4.5173 19 6 2.2801 -2.8464 0.0633 20 6 1.7692 -2.1410 1.3236 21 7 2.0226 -0.6996 1.1944 22 6 2.7044 -0.0210 2.1689 23 1 3.2758 0.8596 1.9148 24 6 2.6611 -0.4647 3.4835 25 7 1.7268 -1.3110 3.8620 26 14 3.9288 0.1393 4.7154 27 1 4.8634 1.0780 4.0441 28 1 3.2414 0.8388 5.8305 29 1 4.6891 -1.0183 5.2512 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5084 -0.8932 33 1 3.1297 -0.6502 -1.2914 34 1 1.6075 -0.2783 -2.1368 35 1 2.8590 -2.5521 -2.8746 36 1 3.7838 -5.2164 -6.5579 37 1 2.8360 -8.6707 -5.1333 38 1 2.6787 -9.2245 -6.8174 39 1 3.8641 -7.9629 -6.4023 40 1 -0.3215 -7.0821 -6.3016 41 1 0.2346 -8.7097 -6.7592 42 1 0.3918 -8.1564 -5.0745 43 1 2.8630 -6.4551 -8.1247 44 1 1.6774 -7.7164 -8.5401 45 1 1.1217 -6.0887 -8.0828 46 1 2.0123 -3.9022 0.1035 47 1 3.3640 -2.7473 0.0051 48 1 2.2944 -2.5275 2.1970 49 1 0.6989 -2.3155 1.4340 50 1 1.6968 -1.6214 4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947727629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:25 Heat of formation + Delta-G solvation = 48.314085 kcal Electronic energy + Delta-G solvation = -29551.413843 eV Core-core repulsion = 25615.181010 eV Total energy + Delta-G solvation = -3936.232832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 7.93 seconds Orbital eigenvalues (eV) -44.53971 -41.01272 -39.31485 -38.20176 -36.10496 -34.38860 -33.61876 -32.59246 -32.05321 -31.17007 -28.65502 -28.42831 -28.39143 -26.48197 -25.56386 -24.00902 -23.69161 -23.10164 -21.55665 -21.09185 -20.16568 -19.13375 -18.36669 -17.61930 -17.49787 -17.42839 -16.69279 -16.03035 -15.95056 -15.58414 -15.50347 -15.17582 -14.99774 -14.92435 -14.69348 -14.28072 -14.17257 -13.89807 -13.79486 -13.29959 -13.23686 -13.15677 -13.02026 -12.91858 -12.76695 -12.66117 -12.56459 -12.38877 -12.29811 -12.05027 -11.99891 -11.97675 -11.80042 -11.50848 -11.47644 -11.42381 -11.41599 -11.01636 -10.61179 -10.54307 -10.05517 -8.67249 -7.83993 -5.29315 0.31861 1.10670 1.16474 1.47542 1.49500 1.59954 2.00711 2.25795 2.53261 3.07665 3.27535 3.32535 3.62935 3.66406 3.75319 3.78276 3.84195 3.91210 4.06700 4.28253 4.44147 4.52212 4.55413 4.58410 4.61081 4.69015 4.71693 4.73825 4.78443 4.80648 4.85486 4.85998 4.92920 5.08094 5.10369 5.11225 5.17111 5.17278 5.22476 5.33848 5.37150 5.44067 5.44473 5.55735 5.69963 5.70407 5.76456 6.38739 6.42933 6.97127 7.12845 7.17189 7.88867 8.41841 9.22990 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.002263 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.991340 B =12368.120488 C =12576.503913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.068 0.932 7 N -0.687 5.687 8 C 0.608 3.392 9 O -0.566 6.566 10 C 0.115 3.885 11 N -0.501 5.501 12 C 0.202 3.798 13 N -0.287 5.287 14 C 0.156 3.844 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.155 4.155 18 N -0.275 5.275 19 C -0.133 4.133 20 C 0.186 3.814 21 N -0.599 5.599 22 C -0.254 4.254 23 H 0.073 0.927 24 C -0.055 4.055 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.294 1.294 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.417 0.583 36 H 0.273 0.727 37 H 0.043 0.957 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.054 0.946 49 H -0.007 1.007 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -12.390 -30.577 33.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.092 0.908 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.339 5.339 8 C 0.391 3.609 9 O -0.442 6.442 10 C -0.163 4.163 11 N -0.227 5.227 12 C -0.092 4.092 13 N -0.083 5.083 14 C 0.076 3.924 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.212 4.212 18 N -0.115 5.115 19 C -0.173 4.173 20 C 0.059 3.941 21 N -0.321 5.321 22 C -0.384 4.384 23 H 0.091 0.909 24 C -0.250 4.250 25 N -0.583 5.583 26 Si 0.795 3.205 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.221 1.221 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.255 0.745 36 H 0.289 0.711 37 H 0.062 0.938 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.011 0.989 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.545 -12.771 -29.626 32.456 hybrid contribution 0.509 0.083 1.214 1.319 sum 4.054 -12.688 -28.413 31.380 Atomic orbital electron populations 1.22196 0.98121 1.00329 1.00695 1.20707 0.92248 0.95571 0.86009 0.90766 1.22152 1.02068 0.92290 0.99171 1.20872 0.98572 0.92299 0.82428 0.91377 1.45766 1.34640 1.25420 1.28029 1.16674 0.81962 0.80606 0.81614 1.90803 1.29476 1.66761 1.57163 1.23410 0.96875 0.95702 1.00336 1.71220 1.17916 1.28114 1.05491 1.27247 0.95420 0.86309 1.00265 1.48207 1.21057 1.21937 1.17143 1.21672 0.98666 0.82007 0.90037 1.22294 0.97971 0.98251 1.02907 1.22021 0.93465 1.02331 1.02893 1.22301 1.04567 1.04353 0.90028 1.74230 1.21121 1.15247 1.00905 1.22352 1.00409 0.98256 0.96324 1.20399 0.95602 0.83739 0.94311 1.44378 1.64146 1.03510 1.20101 1.19571 1.21374 1.10308 0.87191 0.90908 1.25836 0.99544 1.00810 0.98773 1.70214 1.33683 1.37697 1.16740 0.85223 0.79041 0.77406 0.78877 1.18641 1.22219 1.22133 0.94760 0.95025 0.90653 0.90674 0.88987 0.74514 0.71134 0.93798 0.86769 0.89801 0.93009 0.87121 0.93308 0.88924 0.86767 0.92361 0.93974 0.92047 0.92753 0.98862 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.05 9.02 71.98 0.65 -5.40 16 2 C 0.16 6.54 3.29 44.98 0.15 6.69 16 3 H 0.07 2.90 7.93 -2.39 -0.02 2.88 16 4 C -0.12 -3.87 5.02 30.67 0.15 -3.71 16 5 C 0.16 6.01 2.21 45.02 0.10 6.11 16 6 H 0.07 2.84 5.94 -2.38 -0.01 2.83 16 7 N -0.69 -22.36 5.07 -445.24 -2.26 -24.62 16 8 C 0.61 22.42 7.80 86.80 0.68 23.10 16 9 O -0.57 -25.49 16.75 -3.90 -0.07 -25.55 16 10 C 0.12 3.61 7.96 137.13 1.09 4.70 16 11 N -0.50 -12.17 11.09 -193.02 -2.14 -14.31 16 12 C 0.20 3.08 11.71 180.30 2.11 5.19 16 13 N -0.29 -5.15 3.17 -311.60 -0.99 -6.13 16 14 C 0.16 1.44 1.23 3.60 0.00 1.44 16 15 C -0.16 -0.88 8.72 71.98 0.63 -0.25 16 16 C -0.15 -1.79 8.04 71.98 0.58 -1.21 16 17 C -0.15 -0.32 8.28 71.98 0.60 0.28 16 18 N -0.27 -7.95 11.09 -52.44 -0.58 -8.53 16 19 C -0.13 -5.74 5.65 30.67 0.17 -5.57 16 20 C 0.19 9.65 4.88 86.36 0.42 10.07 16 21 N -0.60 -30.28 2.70 -675.24 -1.82 -32.10 16 22 C -0.25 -13.99 9.58 84.03 0.81 -13.19 16 23 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 24 C -0.05 -3.11 4.92 84.86 0.42 -2.69 16 25 N -0.94 -57.39 11.20 21.65 0.24 -57.14 16 26 Si 0.97 45.80 29.59 68.60 2.03 47.83 16 27 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 29 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 30 H 0.03 1.43 5.72 -2.39 -0.01 1.42 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.42 11.42 8.31 -92.71 -0.77 10.65 16 36 H 0.27 0.76 7.53 -2.91 -0.02 0.73 16 37 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 38 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 43 H 0.09 -0.18 7.34 -2.39 -0.02 -0.20 16 44 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.05 3.18 6.06 -2.39 -0.01 3.16 16 49 H -0.01 -0.38 7.49 -2.39 -0.02 -0.40 16 50 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -81.20 396.68 3.14 -78.07 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.17 Total: 16.96 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 8.56 Total: 25.53 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -7.55 Total: -142.84 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.07 Total: -25.55 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -81.20 3.14 -78.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947727629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.382 kcal (2) G-P(sol) polarization free energy of solvation -81.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.94 seconds